Deubiquitylation of deubiquitylases.

abstract：:At least 150 human proteins are glycosylphosphatidylinositol-anchored proteins (GPI-APs). The protein moiety of GPI-APs lacking transmembrane domains is anchored to the plasma membrane with GPI covalently attached to the C-terminus. The GPI consists of the conserved core glycan, phosphatidylinositol and glycan side ch...

journal_title：Open biology

authors： Kinoshita T

更新日期：2020-03-01 00:00:00

abstract：:Osteocytes secrete the glycoprotein sclerostin to inhibit bone formation by osteoblasts, but how sclerostin production is regulated in osteocytes remains unclear. Here, we show that tuberous sclerosis complex 1 (TSC1) in osteocytes promotes sclerostin secretion through inhibition of mechanistic target of rapamycin com...

journal_title：Open biology

authors： Liu W,Wang Z,Yang J,Wang Y,Li K,Huang B,Yan B,Wang T,Li M,Zou Z,Yang J,Xiao G,Cui ZK,Liu A,Bai X

更新日期：2019-05-31 00:00:00

abstract：:The first meeting exclusively dedicated to the 'High-throughput dense reconstruction of cell lineages' took place at Janelia Research Campus (Howard Hughes Medical Institute) from 14 to 18 April 2019. Organized by Tzumin Lee, Connie Cepko, Jorge Garcia-Marques and Isabel Espinosa-Medina, this meeting echoed the recent...

journal_title：Open biology

authors： Espinosa-Medina I,Garcia-Marques J,Cepko C,Lee T

更新日期：2019-12-01 00:00:00

abstract：:Wnts are a highly conserved family of secreted glycoproteins that play essential roles in the morphogenesis and body patterning during the development of metazoan species. In recent years, mounting evidence has revealed important functions of Wnt signalling in diverse aspects of neural development, including neuronal ...

journal_title：Open biology

authors： He CW,Liao CP,Pan CL

更新日期：2018-10-03 00:00:00

abstract：:Myzozoans (which include dinoflagellates, chromerids and apicomplexans) display notable divergence from their ciliate sister group, including a reduced mitochondrial genome and divergent metabolic processes. The factors contributing to these divergent processes are still poorly understood and could serve as potential ...

journal_title：Open biology

authors： Klug D,Mair GR,Frischknecht F,Douglas RG

更新日期：2016-04-01 00:00:00

abstract：:AKTIP is a shelterin-interacting protein required for replication of telomeric DNA. Here, we show that AKTIP biochemically interacts with A- and B-type lamins and affects lamin A, but not lamin C or B, expression. In interphase cells, AKTIP localizes at the nuclear rim and in discrete regions of the nucleoplasm just l...

journal_title：Open biology

authors： Burla R,Carcuro M,Torre ML,Fratini F,Crescenzi M,D'Apice MR,Spitalieri P,Raffa GD,Astrologo L,Lattanzi G,Cundari E,Raimondo D,Biroccio A,Gatti M,Saggio I

更新日期：2016-08-01 00:00:00

abstract：:In eukaryotic cells, about one-third of the synthesized proteins are translocated into the endoplasmic reticulum; they are membrane or lumen resident proteins and proteins direct to the Golgi apparatus. The co-translational translocation takes place through the heterotrimeric protein-conducting channel Sec61 which is ...

journal_title：Open biology

authors： Russo A

更新日期：2020-05-01 00:00:00

abstract：:Tn5 transposase is a bacterial enzyme that integrates a DNA fragment into genomic DNA, and is used as a tool for detecting nucleosome-free regions of genomic DNA in eukaryotes. However, in chromatin, the DNA targeting by Tn5 transposase has remained unclear. In the present study, we reconstituted well-positioned 601 d...

journal_title：Open biology

authors： Sato S,Arimura Y,Kujirai T,Harada A,Maehara K,Nogami J,Ohkawa Y,Kurumizaka H

更新日期：2019-08-30 00:00:00

abstract：:The kinetochore is a complex structure whose function is absolutely essential. Unlike the centromere, the kinetochore at first appeared remarkably well conserved from yeast to humans, especially the microtubule-binding outer kinetochore. However, recent efforts towards biochemical reconstitution of diverse kinetochore...

journal_title：Open biology

authors： Hamilton GE,Davis TN

更新日期：2020-11-01 00:00:00

abstract：:Flagella have multiple functions that are associated with different axonemal structures. Motile flagella typically have a 9 + 2 arrangement of microtubules, whereas sensory flagella normally have a 9 + 0 arrangement. Leishmania exhibits both of these flagellum forms and differentiation between these two flagellum form...

journal_title：Open biology

authors： Sunter JD,Moreira-Leite F,Gull K

更新日期：2018-11-21 00:00:00

abstract：:The urine of bank voles (Myodes glareolus) contains substantial quantities of a small protein that is expressed at much higher levels in males than females, and at higher levels in males in the breeding season. This protein was purified and completely sequenced at the protein level by mass spectrometry. Leucine/isoleu...

journal_title：Open biology

authors： Loxley GM,Unsworth J,Turton MJ,Jebb A,Lilley KS,Simpson DM,Rigden DJ,Hurst JL,Beynon RJ

更新日期：2017-09-01 00:00:00

abstract：:With the widespread use of avermectins (AVMs) for managing parasitic and agricultural pests, the resistance of worms and insects to AVMs has emerged as a serious threat to human health and agriculture worldwide. The reduced penetration of AVMs is one of the main reasons for the development of the resistance to the che...

journal_title：Open biology

authors： Chen LP,Wang P,Sun YJ,Wu YJ

更新日期：2016-04-01 00:00:00

abstract：:During the first cell-fate decision of mouse preimplantation embryo development, a population of outer-residing polar cells is segregated from a second population of inner apolar cells to form two distinct cell lineages: the trophectoderm and the inner cell mass (ICM), respectively. Historically, two models have been ...

journal_title：Open biology

authors： Mihajlović AI,Bruce AW

更新日期：2017-11-01 00:00:00

abstract：:Understanding gene regulation requires knowledge of changes in transcription factor (TF) activities. Simultaneous direct measurement of numerous TF activities is currently impossible. Nevertheless, statistical approaches to infer TF activities have yielded non-trivial and verifiable predictions for individual TFs. Her...

journal_title：Open biology

authors： Rolfe MD,Ocone A,Stapleton MR,Hall S,Trotter EW,Poole RK,Sanguinetti G,Green J,SysMO-SUMO Consortium.

更新日期：2012-07-01 00:00:00

abstract：:Genetic material can be transmitted not only vertically from parent to offspring, but also laterally (horizontally) from one bacterial lineage to another. Lateral genetic transfer is non-uniform; biases in its nature or frequency construct communities of genetic exchange. These biases have been proposed to arise from ...

journal_title：Open biology

authors： Skippington E,Ragan MA

更新日期：2012-09-01 00:00:00

abstract：:The presence of foetal DNA in the plasma of pregnant women has opened up new possibilities for non-invasive prenatal diagnosis. The use of circulating foetal DNA for the non-invasive prenatal detection of foetal chromosomal aneuploidies is challenging as foetal DNA represents a minor fraction of maternal plasma DNA. I...

journal_title：Open biology

authors： Lo YM

更新日期：2012-06-01 00:00:00

abstract：:The conserved Hedgehog (HH) signals control animal development, adult stem cell maintenance and oncogenesis. In Drosophila, the HH co-receptor Patched (PTC) controls both HH gradient formation and signalling. PTC is post-translationally downregulated by HH, which promotes its endocytosis and destabilization, but the m...

journal_title：Open biology

authors： Brigui A,Hofmann L,Argüelles C,Sanial M,Holmgren RA,Plessis A

更新日期：2015-10-01 00:00:00

abstract：:Nutrient fluctuations in the cellular environment promote changes in cell metabolism and growth to adapt cell proliferation accordingly. The target of rapamycin (TOR) signalling network plays a key role in the coordination of growth and cell proliferation with the nutrient environment and, importantly, nutrient limita...

journal_title：Open biology

authors： Lie S,Banks P,Lawless C,Lydall D,Petersen J

更新日期：2018-05-01 00:00:00

abstract：:T-cell identity is established by the expression of a clonotypic T-cell receptor (TCR), generated by somatic rearrangement of TCRα and β genes. The properties of the TCR determine both the degree of self-reactivity and the repertoire of antigens that can be recognized. For CD8 T cells, the relationship between TCR ide...

journal_title：Open biology

authors： Swee LK,Tan ZW,Sanecka A,Yoshida N,Patel H,Grotenbreg G,Frickel EM,Ploegh HL

更新日期：2016-11-01 00:00:00

abstract：:Most animals have separate sexes. The differential expression of gene products, in particular that of gene regulators, is underlying sexual dimorphism. Analyses of sex-biased expression have focused mostly on protein-coding genes. Several lines of evidence indicate that microRNAs, a class of major gene regulators, are...

journal_title：Open biology

authors： Marco A

更新日期：2014-04-02 00:00:00

abstract：:Disruption of the enzymatic activities of the transcription factor TFIIH by the small molecules Triptolide (TPL) or THZ1 could be used against cancer. Here, we used the MCF10A-ErSrc oncogenesis model to compare the effect of TFIIH inhibitors between transformed cells and their progenitors. We report that tumour cells ...

journal_title：Open biology

authors： Uriostegui-Arcos M,Aguayo-Ortiz R,Valencia-Morales MDP,Melchy-Pérez E,Rosenstein Y,Dominguez L,Zurita M

更新日期：2020-06-01 00:00:00

abstract：:Although systemic or local inflammation, commonly featured by cytokine activation, is implicated in patients with bone loss, the underlying mechanisms are still elusive. As microRNAs (miR), a class of small non-coding RNAs involved in essential physiological processes, have been found in bone cells, we aimed to invest...

journal_title：Open biology

authors： Wang N,Zhou Z,Wu T,Liu W,Yin P,Pan C,Yu X

更新日期：2016-03-01 00:00:00

abstract：:Genomic regions with repeated sequences are unstable and prone to rapid DNA diversification. However, the role of tandem repeats within the coding region is not fully characterized. Here, we have identified a new hypervariable C-type lectin gene family with different numbers of tandem repeats (Rlecs; R means repeat) i...

journal_title：Open biology

authors： Huang Y,Huang X,Zhou X,Wang J,Zhang R,Ma F,Wang K,Zhang Z,Dai X,Cao X,Zhang C,Han K,Ren Q

更新日期：2020-09-01 00:00:00

abstract：:DNA methylation has been investigated for many years, but recent technologies have allowed for single-cell- and single-base-resolution DNA methylation datasets and more accurate assessment of DNA methylation dynamics at the key genomic regions that regulate gene expression in human early embryonic development. In this...

journal_title：Open biology

authors： Luo R,Bai C,Yang L,Zheng Z,Su G,Gao G,Wei Z,Zuo Y,Li G

更新日期：2018-10-31 00:00:00

abstract：:ThyX is an essential thymidylate synthase that is mechanistically and structurally unrelated to the functionally analogous human enzyme, thus providing means for selective inhibition of bacterial growth. To identify novel compounds with anti-bacterial activity against the human pathogenic bacterium Helicobacter pylori...

journal_title：Open biology

authors： Skouloubris S,Djaout K,Lamarre I,Lambry JC,Anger K,Briffotaux J,Liebl U,de Reuse H,Myllykallio H

更新日期：2015-06-01 00:00:00

abstract：:Vertebrate NCoR-family co-repressors play central roles in the timing of embryo and stem cell differentiation by repressing the activity of a range of transcription factors. They interact with nuclear receptors using short linear motifs (SLiMs) termed co-repressor for nuclear receptor (CoRNR) boxes. Here, we identify ...

journal_title：Open biology

authors： Short S,Peterkin T,Guille M,Patient R,Sharpe C

更新日期：2015-08-01 00:00:00

abstract：:Cancer cells undergo many different alterations during their transformation, including genetic and epigenetic events. The controlled division of healthy cells can be impaired through the downregulation of tumour suppressor genes. Here, we provide an update of the mechanisms in which epigenetically altered coding and n...

journal_title：Open biology

authors： Llinàs-Arias P,Esteller M

更新日期：2017-09-01 00:00:00

abstract：:The hallmark of high-risk human papillomavirus (HR-HPV)-related carcinogenesis is E6 and E7 oncogene overexpression. The aim of this work was to characterize epithelial oral and cervical cancer cells that express HR-HPV E6 and E7 oncoproteins. Transcriptomic assay using DNA microarrays revealed that PIR gene expressio...

journal_title：Open biology

authors： Carrillo D,Muñoz JP,Huerta H,Leal G,Corvalán A,León O,Calaf GM,Urzúa U,Boccardo E,Tapia JC,Aguayo F

更新日期：2017-11-01 00:00:00

abstract：:Leucocytes form the principal cellular components of immunity and inflammation, existing as multiple subsets defined by distinct phenotypic and functional profiles. To date, this has most notably been documented for lymphocytes and monocytes. In contrast, as neutrophils are traditionally considered, to be short-lived,...

journal_title：Open biology

authors： Beyrau M,Bodkin JV,Nourshargh S

更新日期：2012-11-01 00:00:00

abstract：:Adenosine monophosphate (AMP)-activated protein kinase (AMPK), a highly conserved energy sensor, has a crucial role in cardiovascular, neurodegenerative and inflammatory diseases, as well as in cancer and metabolic disorders. Accumulating studies have demonstrated that AMPK activation enhances paracellular junctions, ...

journal_title：Open biology

authors： Sun X,Zhu MJ

更新日期：2017-08-01 00:00:00