Protein ADP-ribosylation and the cellular response to DNA strand breaks.

Abstract:

:DNA strand breaks arise continuously in cells and can lead to chromosome rearrangements and genome instability or cell death. The commonest DNA breaks are DNA single-strand breaks, which arise at a frequency of tens-of-thousands per cell each day and which can block the progression of RNA/DNA polymerases and disrupt gene transcription and genome duplication. If not rapidly repaired, SSBs can be converted into DNA double-strand breaks (DSBs) during genome duplication, eliciting a complex series of DNA damage responses that attempt to protect cells from irreversible replication fork collapse. DSBs are the most cytotoxic and clastogenic type of DNA breaks, and can also arise independently of DNA replication, albeit at a frequency several orders of magnitude lower than SSBs. Here, I discuss the evidence that DNA single- and double -strand break repair pathways, and cellular tolerance mechanisms for protecting replication forks during genome duplication, utilize signalling by protein ADP-ribosyltransferases to protect cells from the harmful impact of DNA strand breakage.

journal_name

DNA Repair (Amst)

journal_title

DNA repair

authors

Caldecott KW

doi

10.1016/j.dnarep.2014.03.021

subject

Has Abstract

pub_date

2014-07-01 00:00:00

pages

108-13

eissn

1568-7864

issn

1568-7856

pii

S1568-7864(14)00092-5

journal_volume

19

pub_type

杂志文章,评审
  • Quantitative site-specific ADP-ribosylation profiling of DNA-dependent PARPs.

    abstract::An important feature of poly(ADP-ribose) polymerases (PARPs) is their ability to readily undergo automodification upon activation. Although a growing number of substrates were found to be poly(ADP-ribosyl)ated, including histones and several DNA damage response factors, PARPs themselves are still considered as the mai...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2015.02.004

    authors: Gagné JP,Ethier C,Defoy D,Bourassa S,Langelier MF,Riccio AA,Pascal JM,Moon KM,Foster LJ,Ning Z,Figeys D,Droit A,Poirier GG

    更新日期:2015-06-01 00:00:00

  • recX, a new SOS gene that is co-transcribed with the recA gene in Escherichia coli.

    abstract::recX is a small open reading frame located downstream of recA that is conserved in many bacteria. In Escherichia coli, the recX gene (also named oraA) is a 501 bp open reading frame that encodes a predicted basic protein. Transcriptional analysis by Northern blots showed that in E. coli the recX gene is SOS-regulated....

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/s1568-7864(02)00217-3

    authors: Pagès V,Koffel-Schwartz N,Fuchs RP

    更新日期:2003-03-01 00:00:00

  • Endogenous expression of phosphorylated histone H2AX in tumors in relation to DNA double-strand breaks and genomic instability.

    abstract::Microscopically visible gammaH2AX foci signify the presence of DNA double-strand breaks (dsbs) in irradiated cells. However, large foci are also observed in untreated tumour cells, and high numbers reduce the sensitivity for detecting drug or radiation-induced DNA breaks. SW756 cervical carcinoma cells that express ab...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2006.05.040

    authors: Yu T,MacPhail SH,Banáth JP,Klokov D,Olive PL

    更新日期:2006-08-13 00:00:00

  • DNA repair mechanisms in dividing and non-dividing cells.

    abstract::DNA damage created by endogenous or exogenous genotoxic agents can exist in multiple forms, and if allowed to persist, can promote genome instability and directly lead to various human diseases, particularly cancer, neurological abnormalities, immunodeficiency and premature aging. To avoid such deleterious outcomes, c...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2013.04.015

    authors: Iyama T,Wilson DM 3rd

    更新日期:2013-08-01 00:00:00

  • RecA mediated initial alignment of homologous DNA molecules displays apparent first order kinetics with little effect of heterology.

    abstract::The mechanism and determinants of RecA mediated initial alignment of homologous DNA molecules were studied by performing Monte Carlo simulations of the dynamics of DNA molecules. The simulation procedure was used to assess the effect of heterologous DNA and dilution on the rate of formation and yield of homologous ali...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2003.09.009

    authors: Patel S,Edwards JS

    更新日期:2004-01-05 00:00:00

  • MGMT inhibitors--The Trinity College-Paterson Institute experience, a chemist's perception.

    abstract::The DNA repair protein, O(6)-alkylguanine-DNA alkyltransferase (MGMT) can confer resistance to the cancer chemotherapeutic effects of the class of DNA damaging drugs generally referred to as the O(6)-alkylating agents. Inactivation of MGMT is thus a practical approach to improving the efficacy of such agents. An accou...

    journal_title:DNA repair

    pub_type: 历史文章,杂志文章

    doi:10.1016/j.dnarep.2007.03.015

    authors: McMurry TB

    更新日期:2007-08-01 00:00:00

  • Cross-species inhibition of dUTPase via the Staphylococcal Stl protein perturbs dNTP pool and colony formation in Mycobacterium.

    abstract::Proteins responsible for the integrity of the genome are often used targets in drug therapies against various diseases. The inhibitors of these proteins are also important to study the pathways in genome integrity maintenance. A prominent example is Ugi, a well known cross-species inhibitor protein of the enzyme uraci...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2015.03.005

    authors: Hirmondó R,Szabó JE,Nyíri K,Tarjányi S,Dobrotka P,Tóth J,Vértessy BG

    更新日期:2015-06-01 00:00:00

  • Amino acid changes in Xrs2p, Dun1p, and Rfa2p that remove the preferred targets of the ATM family of protein kinases do not affect DNA repair or telomere length in Saccharomyces cerevisiae.

    abstract::In eukaryotes, mutations in a number of genes that affect DNA damage checkpoints or DNA replication also affect telomere length [Curr. Opin. Cell Biol. 13 (2001) 281]. Saccharomyces cerevisae strains with mutations in the TEL1 gene (encoding an ATM-like protein kinase) have very short telomeres, as do strains with mut...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/s1568-7864(03)00115-0

    authors: Mallory JC,Bashkirov VI,Trujillo KM,Solinger JA,Dominska M,Sung P,Heyer WD,Petes TD

    更新日期:2003-09-18 00:00:00

  • Chromosome integrity at a double-strand break requires exonuclease 1 and MRX.

    abstract::The continuity of duplex DNA is generally considered a prerequisite for chromosome continuity. However, as previously shown in yeast as well as human cells, the introduction of a double-strand break (DSB) does not generate a chromosome break (CRB) in yeast or human cells. The transition from DSB to CRB was found to be...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2010.10.004

    authors: Nakai W,Westmoreland J,Yeh E,Bloom K,Resnick MA

    更新日期:2011-01-02 00:00:00

  • Defects in recombination activity caused by somatic and germline mutations in the multimerization/BRCA2 binding region of human RAD51 protein.

    abstract::The human RAD51 recombinase possesses DNA pairing and strand exchange activities that are essential for the error-free, homology-directed repair of DNA double-strand breaks. The recombination activities of RAD51 are activated upon its assembly into presynaptic filaments on single-stranded DNA at resected DSB ends. Def...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2017.10.008

    authors: Silva MC,Bryan KE,Morrical MD,Averill AM,Dragon J,Wiegmans AP,Morrical SW

    更新日期:2017-12-01 00:00:00

  • Frameshifts and deletions during in vitro translesion synthesis past Pt-DNA adducts by DNA polymerases beta and eta.

    abstract::DNA polymerases beta (pol beta ) and eta (pol eta ) are the only two eukaryotic polymerases known to efficiently bypass cisplatin and oxaliplatin adducts in vitro. Frameshift errors are an important aspect of mutagenesis. We have compared the types of frameshifts that occur during translesion synthesis past cisplatin ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/s1568-7864(02)00150-7

    authors: Bassett E,Vaisman A,Tropea KA,McCall CM,Masutani C,Hanaoka F,Chaney SG

    更新日期:2002-12-05 00:00:00

  • Detection of the small oligonucleotide products of nucleotide excision repair in UVB-irradiated human skin.

    abstract::UVB radiation results in the formation of potentially mutagenic photoproducts in the DNA of epidermal skin cells. In vitro approaches have demonstrated that the nucleotide excision repair (NER) machinery removes UV photoproducts from DNA in the form of small (∼30-nt-long), excised, damage-containing DNA oligonucleotid...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2019.102766

    authors: Choi JH,Han S,Kemp MG

    更新日期:2020-02-01 00:00:00

  • DNA mismatch repair preferentially safeguards actively transcribed genes.

    abstract::DNA mismatch repair (MMR) is an evolutionally conserved genome maintenance pathway and is well known for its role in maintaining replication fidelity by correcting biosynthetic errors generated during DNA replication. However, recent studies have shown that MMR preferentially protects actively transcribed genes from m...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2018.08.010

    authors: Huang Y,Li GM

    更新日期:2018-11-01 00:00:00

  • Mismatch repair protein Msh2 contributes to UVB-induced cell cycle arrest in epidermal and cultured mouse keratinocytes.

    abstract::Nucleotide excision repair (NER), cell cycle regulation and apoptosis are major defence mechanisms against the carcinogenic effects of UVB radiation. NER eliminates UVB-induced DNA photolesions via two subpathways: global genome repair (GGR) and transcription-coupled repair (TCR). In a previous study, we found UVB-ind...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2004.08.008

    authors: van Oosten M,Stout GJ,Backendorf C,Rebel H,de Wind N,Darroudi F,van Kranen HJ,de Gruijl FR,Mullenders LH

    更新日期:2005-01-02 00:00:00

  • Polk mutant mice have a spontaneous mutator phenotype.

    abstract::Mice defective for the Polk gene, which encodes DNA polymerase kappa, are viable and do not manifest obvious phenotypes. The present studies document a spontaneous mutator phenotype in Polk(-/-) mice. The initial indication of enhanced spontaneous mutations in these mice came from the serendipitous observation of a po...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2009.09.003

    authors: Stancel JN,McDaniel LD,Velasco S,Richardson J,Guo C,Friedberg EC

    更新日期:2009-12-03 00:00:00

  • DNA damage response and breast cancer development: Possible therapeutic applications of ATR, ATM, PARP, BRCA1 inhibition.

    abstract::Breast cancer is the most common and significant cancers in females regarding the loss of life quality. Similar to other cancers, one of the etiologic factors in breast cancer is DNA damage. A plethora of molecules are responsible for sensing DNA damage and mediating actions which lead to DNA repair, senescence, cell ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2020.103032

    authors: Mirza-Aghazadeh-Attari M,Recio MJ,Darband SG,Kaviani M,Safa A,Mihanfar A,Sadighparvar S,Karimian A,Alemi F,Majidinia M,Yousefi B

    更新日期:2020-12-17 00:00:00

  • The Rad52-Rad59 complex interacts with Rad51 and replication protein A.

    abstract::The RAD52 gene is essential for homology-dependent repair of double-strand breaks in Saccharomyces cerevisiae. Rad52 forms complexes with Rad51, replication protein A (RPA) or Rad59 and its presence is essential for the formation of Rad51-Rad52-Rad59 and RPA-Rad52-Rad59 complexes. The N-terminal region of Rad52, which...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/s1568-7864(03)00121-6

    authors: Davis AP,Symington LS

    更新日期:2003-10-07 00:00:00

  • Dysfunctional mammalian telomeres join with DNA double-strand breaks.

    abstract::In addition to joining broken DNA strands, several non-homologous end-joining (NHEJ) proteins have a second seemingly antithetical role in constructing functional telomeres, the nucleoprotein structures at the termini of linear eukaryotic chromosomes that prevent joining between natural chromosome ends. Although NHEJ ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2003.11.007

    authors: Bailey SM,Cornforth MN,Ullrich RL,Goodwin EH

    更新日期:2004-04-01 00:00:00

  • Ataxia-telangiectasia-like disorder (ATLD)-its clinical presentation and molecular basis.

    abstract::Comparison of the clinical and cellular phenotypes of different genomic instability syndromes provides new insights into functional links in the complex network of the DNA damage response. A prominent example of this principle is provided by examination of three such disorders: ataxia-telangiectasia (A-T) caused by la...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2004.04.009

    authors: Taylor AM,Groom A,Byrd PJ

    更新日期:2004-08-01 00:00:00

  • Kinetic analysis of DNA double-strand break repair pathways in Arabidopsis.

    abstract::Double-strand breaks in genomic DNA (DSB) are potentially lethal lesions which separate parts of chromosome arms from their centromeres. Repair of DSB by recombination can generate mutations and further chromosomal rearrangements, making the regulation of recombination and the choice of recombination pathways of the h...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2011.04.002

    authors: Charbonnel C,Allain E,Gallego ME,White CI

    更新日期:2011-06-10 00:00:00

  • Evaluation of the Escherichia coli HK82 and BS87 strains as tools for AlkB studies.

    abstract::Within a decade the family of AlkB dioxygenases has been extensively studied as a one-protein DNA/RNA repair system in Escherichia coli but also as a group of proteins of much wider functions in eukaryotes. Two strains, HK82 and BS87, are the most commonly used E. coli strains for the alkB gene mutations. The aim of t...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2015.12.010

    authors: Mielecki D,Sikora A,Wrzesiński M,Nieminuszczy J,Detman A,Żuchniewicz K,Gromadka R,Grzesiuk E

    更新日期:2016-03-01 00:00:00

  • The hidden side of unstable DNA repeats: Mutagenesis at a distance.

    abstract::Structure-prone DNA repeats are common components of genomic DNA in all kingdoms of life. In humans, these repeats are linked to genomic instabilities that result in various hereditary disorders, including many cancers. It has long been known that DNA repeats are not only highly polymorphic in length but can also caus...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2015.04.020

    authors: Shah KA,Mirkin SM

    更新日期:2015-08-01 00:00:00

  • Preserving replication fork integrity and competence via the homologous recombination pathway.

    abstract::Flaws in the DNA replication process have emerged as a leading driver of genome instability in human diseases. Alteration to replication fork progression is a defining feature of replication stress and the consequent failure to maintain fork integrity and complete genome duplication within a single round of S-phase co...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2018.08.017

    authors: Ait Saada A,Lambert SAE,Carr AM

    更新日期:2018-11-01 00:00:00

  • Both replication bypass fidelity and repair efficiency influence the yield of mutations per target dose in intact mammalian cells induced by benzo[a]pyrene-diol-epoxide and dibenzo[a,l]pyrene-diol-epoxide.

    abstract::Mutations induced by polycyclic aromatic hydrocarbons (PAH) are expected to be produced when error-prone DNA replication occurs across unrepaired DNA lesions formed by reactive PAH metabolites such as diol epoxides. The mutagenicity of the two PAH-diol epoxides (+)-anti-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenz...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2008.03.022

    authors: Lagerqvist A,Håkansson D,Prochazka G,Lundin C,Dreij K,Segerbäck D,Jernström B,Törnqvist M,Seidel A,Erixon K,Jenssen D

    更新日期:2008-08-02 00:00:00

  • Identification of a unique insertion in plant organellar DNA polymerases responsible for 5'-dRP lyase and strand-displacement activities: Implications for Base Excision Repair.

    abstract::Plant mitochondrial and chloroplast genomes encode essential proteins for oxidative phosphorylation and photosynthesis. For proper cellular function, plant organelles must ensure genome integrity. Although plant organelles repair damaged DNA using the multi-enzyme Base Excision Repair (BER) pathway, the details of thi...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2018.02.010

    authors: Trasviña-Arenas CH,Baruch-Torres N,Cordoba-Andrade FJ,Ayala-García VM,García-Medel PL,Díaz-Quezada C,Peralta-Castro A,Ordaz-Ortiz JJ,Brieba LG

    更新日期:2018-05-01 00:00:00

  • Telomeres and chromosome instability.

    abstract::Genomic instability has been proposed to play an important role in cancer by accelerating the accumulation of genetic changes responsible for cancer cell evolution. One mechanism for chromosome instability is through the loss of telomeres, which are DNA-protein complexes that protect the ends of chromosomes and preven...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2006.05.030

    authors: Murnane JP

    更新日期:2006-09-08 00:00:00

  • The role of the DNA damage response in neuronal development, organization and maintenance.

    abstract::The DNA damage response is a key factor in the maintenance of genome stability. As such, it is a central axis in sustaining cellular homeostasis in a variety of contexts: development, growth, differentiation, and maintenance of the normal life cycle of the cell. It is now clear that diverse mechanisms encompassing cel...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2008.03.005

    authors: Barzilai A,Biton S,Shiloh Y

    更新日期:2008-07-01 00:00:00

  • REV1 mediated mutagenesis in base excision repair deficient mouse fibroblast.

    abstract::The DNA polymerase beta (Pol beta) null background renders mouse embryonic fibroblast (MEF) cells base excision repair deficient and hyper-mutagenic upon treatment with the monofunctional alkylating agent, methyl methanesulfonate (MMS). This effect involves an increase in all types of base substitutions, with a modest...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2005.05.002

    authors: Poltoratsky V,Horton JK,Prasad R,Wilson SH

    更新日期:2005-09-28 00:00:00

  • Characterization in vitro and in vivo of the DNA helicase encoded by Deinococcus radiodurans locus DR1572.

    abstract::Deinococcus radiodurans survives extremely high doses of ionizing and ultraviolet radiation and treatment with various DNA-damaging chemicals. As an effort to identify and characterize proteins that function in DNA repair in this organism, we have studied the protein encoded by locus DR1572. This gene is predicted to ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2008.12.011

    authors: Cao Z,Julin DA

    更新日期:2009-05-01 00:00:00

  • A proposal: Evolution of PCNA's role as a marker of newly replicated DNA.

    abstract::Processivity clamps that hold DNA polymerases to DNA for processivity were the first proteins known to encircle the DNA duplex. At the time, polymerase processivity was thought to be the only function of ring shaped processivity clamps. But studies from many laboratories have identified numerous proteins that bind and...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2015.01.015

    authors: Georgescu R,Langston L,O'Donnell M

    更新日期:2015-05-01 00:00:00