Genome sequence and comparative genomics analysis of a Vibrio cholerae O1 strain isolated from a cholera patient in Malaysia.

Abstract:

:The genome sequence analysis of a clinical Vibrio cholerae VC35 strain from an outbreak case in Malaysia indicates multiple genes involved in host adaptation and a novel Na(+)-driven multidrug efflux pump-coding gene in the genome of Vibrio cholerae with the highest similarity to VMA_001754 of Vibrio mimicus VMA223.

journal_name

J Bacteriol

journal_title

Journal of bacteriology

authors

Osama A,Gan HM,Teh CS,Yap KP,Thong KL

doi

10.1128/JB.01832-12

subject

Has Abstract

pub_date

2012-12-01 00:00:00

pages

6933

issue

24

eissn

0021-9193

issn

1098-5530

pii

194/24/6933

journal_volume

194

pub_type

杂志文章
  • Role of ubiquinone in hydrogen-dependent electron transport in Rhizobium japonicum.

    abstract::Direct evidence for the involvement of ubiquinone in H2 oxidation by Rhizobium japonicum was demonstrated; H2 reduced ca. 80% of the extractable ubiquinone. The inhibitor 2-n-heptyl-4-hydroxyquinoline-N-oxide blocked electron transport at a site between ubiquinone and the cytochromes. The results showed that no cytoch...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.161.2.775-777.1985

    authors: O'Brian MR,Maier RJ

    更新日期:1985-02-01 00:00:00

  • bop gene cluster expression in bacteriorhodopsin-overproducing mutants of Halobacterium halobium.

    abstract::mRNA levels from the bop (bacterio-opsin), brp (bacterio-opsin-related protein), and bat (bacterio-opsin activator) genes in wild-type Halobacterium halobium and two bacteriorhodopsin-overproducing mutants (ET1001 and II-7) were quantitated under conditions in which oxygen levels were steadily depleted and then cultur...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.176.6.1655-1660.1994

    authors: Shand RF,Betlach MC

    更新日期:1994-03-01 00:00:00

  • Preferential selection of deletion mutations of the outer membrane lipoprotein gene of Escherichia coli by globomycin.

    abstract::Globomycin is an antibiotic which inhibits the processing of the prolipoprotein. Eighty globomycin-resistant mutants were independently isolated from Escherichia coli K-12 which had a deletion mutation in chromosomal lipoprotein gene (lpp), but contained a plasmid carrying the wild-type lpp gene. Twenty-six of the mut...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.145.1.654-656.1981

    authors: Zwiebel LJ,Inukai M,Nakamura K,Inouye M

    更新日期:1981-01-01 00:00:00

  • Dinitrogenase reductase-activating glycohydrolase can be released from chromatophores of Rhodospirillum rubrum by treatment with MgGDP.

    abstract::Dinitrogenase reductase-activating glycohydrolase (DRAG), involved in the regulation of nitrogenase activity in Rhodospirillum rubrum, is associated with chromatophore membranes in cell extracts. We show that DRAG can be specifically released by treatment with MgGDP; other nucleotides studied had no effect. The DRAG a...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.179.24.7872-7874.1997

    authors: Norén A,Nordlund S

    更新日期:1997-12-01 00:00:00

  • CHROMOSOMAL LOCATION OF THYMINE AND ARGININE GENES IN ESCHERICHIA COLI AND AN F' INCORPORATING THEM.

    abstract::Ishibashi, Masahide (Osaka University, Osaka, Japan), Yoshinobu Sugino, and Yukinori Hirota. Chromosomal location of thymine and arginine genes in Escherichia coli and an F' incorporating them. J. Bacteriol. 87:554-561. 1964.-The gene responsible for thymine requirement or independence in Escherichia coli K-12 is loca...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.87.3.554-561.1964

    authors: ISHIBASHI M,SUGINO Y,HIROTA Y

    更新日期:1964-03-01 00:00:00

  • Effect of cessation of phospholipid synthesis on the synthesis of a specific membrane-associated bacteriophage protein in Escherichia coli.

    abstract::The major coat protein of the bacteriophage f1 is synthesized during infection of Escherichia coli and becomes tightly associated with the host membrane. This synthesis was studied in conjunction with the strain BB26-36, a mutant defective in phospholipid synthesis, to investigate basic questions concerning membrane p...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.129.3.1245-1249.1977

    authors: Cashman JS,Webster RE

    更新日期:1977-03-01 00:00:00

  • Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.

    abstract::Lipopolysaccharide (LPS) is an essential component of the outer membrane (OM) in most gram-negative bacteria, and its structure and biosynthetic pathway are well known. Nevertheless, the mechanisms of transport and assembly of this molecule at the cell surface are poorly understood. The inner membrane (IM) transport p...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.00270-08

    authors: Sperandeo P,Lau FK,Carpentieri A,De Castro C,Molinaro A,Dehò G,Silhavy TJ,Polissi A

    更新日期:2008-07-01 00:00:00

  • Expression, purification, and characterization of AknX anthrone oxygenase, which is involved in aklavinone biosynthesis in Streptomyces galilaeus.

    abstract::In streptomycete anthracycline biosynthetic gene clusters, small open reading frames are located just upstream of minimal polyketide synthase genes. aknX is such a gene found in the aklavinone-aclacinomycin biosynthetic gene cluster of Streptomyces galilaeus. In order to identify its function, the aknX gene was expres...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.184.22.6115-6122.2002

    authors: Chung JY,Fujii I,Harada S,Sankawa U,Ebizuka Y

    更新日期:2002-11-01 00:00:00

  • Stable denaturation of chromosomal DNA from Saccharomyces cerevisiae during meiosis.

    abstract::Partial denaturation of Saccharomyces cerevisiae chromosomal DNA was found to occur spontaneously during meiosis. Short regions of strand separation (300 base pairs long) were seen in DNA molecules prepared for electron microscopy by the aqueous spreading technique. These regions were clustered along the DNA. The time...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.134.2.629-635.1978

    authors: Klein HL,Byers B

    更新日期:1978-05-01 00:00:00

  • The LiaFSR system regulates the cell envelope stress response in Streptococcus mutans.

    abstract::Maintaining cell envelope integrity is critical for bacterial survival, including bacteria living in a complex and dynamic environment such as the human oral cavity. Streptococcus mutans, a major etiological agent of dental caries, uses two-component signal transduction systems (TCSTSs) to monitor and respond to vario...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.01563-08

    authors: Suntharalingam P,Senadheera MD,Mair RW,Lévesque CM,Cvitkovitch DG

    更新日期:2009-05-01 00:00:00

  • Synthesis of acid-soluble spore proteins by Bacillus subtilis.

    abstract::The major acid-soluble spore proteins (ASSPs) of Bacillus subtilis were detected by immunoprecipitation of radioactively labeled in vitro- and in vivo-synthesized proteins. ASSP synthesis in vivo began 2 h after the initiation of sporulation (t2) and reached its maximum rate at t7. This corresponded to the time of syn...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:

    authors: Leventhal JM,Chambliss GH

    更新日期:1982-12-01 00:00:00

  • Prolonged stationary-phase incubation selects for lrp mutations in Escherichia coli K-12.

    abstract::Evolution by natural selection occurs in cultures of Escherichia coli maintained under carbon starvation stress. Mutants of increased fitness express a growth advantage in stationary phase (GASP) phenotype, enabling them to grow and displace the parent as the majority population. The first GASP mutation was identified...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.182.15.4361-4365.2000

    authors: Zinser ER,Kolter R

    更新日期:2000-08-01 00:00:00

  • Characterization of chloramphenicol acetyltransferase from chloramphenicol-resistant Staphylococcus aureus.

    abstract::Chloramphenicol-resistant strains of Staphylococcus aureus contain an inducible enzyme which inactivates chloramphenicol by acetylation in the presence of acetyl coenzyme A. The products of acetylation are chromatographically indistinguishable from those obtained with chloramphenicol-resistant Escherichia coli harbori...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.95.1.28-36.1968

    authors: Shaw WV,Brodsky RF

    更新日期:1968-01-01 00:00:00

  • Escherichia coli K-12 mutants in which viability is dependent on recA function.

    abstract::A gene required for growth and viability in recA mutants of Escherichia coli K-12 was identified. This gene, rdgB (for Rec-dependent growth), mapped near 64 min on the E. coli genetic map. In a strain carrying a temperature-sensitive recA allele, recA200, and an rdgB mutation, DNA synthesis but not protein synthesis c...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.169.9.4203-4210.1987

    authors: Clyman J,Cunningham RP

    更新日期:1987-09-01 00:00:00

  • Draft genome sequence of Staphylococcus aureus ST672, an emerging disease clone from India.

    abstract::We report the draft genome sequence of methicillin-resistant Staphylococcus aureus (MRSA) strain ST672, an emerging disease clone in India, from a septicemia patient. The genome size is about 2.82 Mb with 2,485 open reading frames (ORFs). The staphylococcal cassette chromosome mec (SCCmec) element (type V) and immune ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.01868-12

    authors: Khedkar S,Prabhakara S,Loganathan RM,S C,Gowda M,Arakere G,Seshasayee AS

    更新日期:2012-12-01 00:00:00

  • Trypsin mediates growth phase-dependent transcriptional tegulation of genes involved in biosynthesis of ruminococcin A, a lantibiotic produced by a Ruminococcus gnavus strain from a human intestinal microbiota.

    abstract::Ruminococcin A (RumA) is a trypsin-dependent lantibiotic produced by Ruminococcus gnavus E1, a gram-positive strict anaerobic strain isolated from a human intestinal microbiota. A 12.8-kb region from R. gnavus E1 chromosome, containing the biosynthetic gene cluster of RumA, has been cloned and sequenced. It consisted ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.184.1.18-28.2002

    authors: Gomez A,Ladiré M,Marcille F,Fons M

    更新日期:2002-01-01 00:00:00

  • Ribosome synthesis in Rhodopseudomonas capsulata cells growing in continuous and intermittent light.

    abstract::The ribosome content was markedly reduced when illumination (at 28 C) was repeatedly interrupted; an opposite trend was observed with continuous light as the temperature was decreased. ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.97.3.1518-1519.1969

    authors: Din GA,Gest H

    更新日期:1969-03-01 00:00:00

  • Fine structure of sporulation in Bacillus cereus grown in a chemically defined medium.

    abstract::Ellar, D. J. (Syracuse University, Syracuse, N.Y.), and D. G. Lundgren. Fine structure of sporulation in Bacillus cereus grown in a chemically defined medium. J. Bacteriol. 92:1748-1764. 1966.-A study was made of the fine structure of sporulating cells of Bacillus cereus grown in a chemically defined medium. The devel...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.92.6.1748-1764.1966

    authors: Ellar DJ,Lundgren DG

    更新日期:1966-12-01 00:00:00

  • "Position effect" on dominance in the D-serine deaminase system of Escherichia coli K-12.

    abstract::A completely stable F32 merodiploid has been isolated, which has the dsd genotype dsdA(+)dsdCx3 /F -dsdA(+)dsdC(+). The stabilization apparently does not result from an alteration in the F, or from its integration in the chromosome, but rather from a chromosomal aberration. The stable strain can exist in two forms, wh...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.94.6.1989-1993.1967

    authors: McFall E

    更新日期:1967-12-01 00:00:00

  • Linked transformation of bacterial and prophage markers in Bacillus subtilis 168 lysogenic for bacteriophage phi 105.

    abstract::Level of competence reached by Bacillus subtilis 168 lysogenic for temperate phage phi 105 was reduced compared to that reached by nonlysogenic cells. This effect was probably related to an alteration of the bacterial surface. Deoxyribonucleic acid extracted from phi 105 lysogenic bacteria was used to transform other ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.98.3.874-877.1969

    authors: Peterson AM,Rutberg L

    更新日期:1969-06-01 00:00:00

  • Cross-pathway regulation in Saccharomyces cerevisiae: activation of the proline utilization pathway by Ga14p in vivo.

    abstract::The Put3p and Gal4p transcriptional activators are members of a distinct class of fungal regulators called the Cys(6) Zn(II)(2) binuclear cluster family. This family includes over 50 different Saccharomyces cerevisiae proteins that share a similar domain organization. Gal4p activates the genes of the galactose utiliza...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.182.13.3748-3753.2000

    authors: D'Alessio M,Brandriss MC

    更新日期:2000-07-01 00:00:00

  • Correlation between degradation and ultrastructure of peptidoglycan during autolysis of Escherichia coli.

    abstract::The kinetics of peptidoglycan degradation were examined under different conditions of autolysis of Escherichia coli. With cephaloridine- or moenomycin-induced autolysis, degradation did not exceed 25 to 35%, whereas in EDTA-induced autolysis it rapidly reached 65 to 70%. When nonautolyzing cells were fixed overnight w...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.161.2.627-635.1985

    authors: Leduc M,Frehel C,van Heijenoort J

    更新日期:1985-02-01 00:00:00

  • A naturally occurring gene amplification leading to sulfonamide and trimethoprim resistance in Streptococcus agalactiae.

    abstract::Gene amplifications have been detected as a transitory phenomenon in bacterial cultures. They are predicted to contribute to rapid adaptation by simultaneously increasing the expression of genes clustered on the chromosome. However, genome amplifications have rarely been described in natural isolates. Through DNA arra...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.01357-07

    authors: Brochet M,Couvé E,Zouine M,Poyart C,Glaser P

    更新日期:2008-01-01 00:00:00

  • Methylation of the cellular lipid of methionine-requiring Agrobacterium tumefaciens.

    abstract::Mutants of Agrobacterium tumefaciens requiring methionine for growth on a solid basal medium were induced by the use of N-methyl-N'-nitro-N-nitrosoguanidine. In addition to the difference of mutant strains, the extent of methionine dependency differed in a liquid basal medium and in the presence of aspartate or fumara...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.95.6.2078-2082.1968

    authors: Kaneshiro T

    更新日期:1968-06-01 00:00:00

  • Pseudomonas aeruginosa outer membrane permeability: isolation of a porin protein F-deficient mutant.

    abstract::A mutant of Pseudomonas aeruginosa severely deficient in outer membrane protein F levels was isolated by screening heavily mutagenized strains for membrane protein alterations on sodium dodecyl sulphate-polyacrylamide gel electrophoresis. To provide a basis for phenotypic comparison, three independent spontaneous reve...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.153.1.281-285.1983

    authors: Nicas TI,Hancock RE

    更新日期:1983-01-01 00:00:00

  • GerN, an antiporter homologue important in germination of Bacillus cereus endospores.

    abstract::A homologue of the grmA spore germination gene of Bacillus megaterium and of a NaH-antiporter gene (napA) of Enterococcus hirae has been identified in Bacillus cereus 569 (ATCC 10876). The putative protein product has 58 and 43% amino acid identity with GrmA and NapA, respectively. Insertional inactivation of this B. ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.183.2.476-482.2001

    authors: Thackray PD,Behravan J,Southworth TW,Moir A

    更新日期:2001-01-01 00:00:00

  • EmrE, a small Escherichia coli multidrug transporter, protects Saccharomyces cerevisiae from toxins by sequestration in the vacuole.

    abstract::In this report we describe the functional expression of EmrE, a 110-amino-acid multidrug transporter from Escherichia coli, in the yeast Saccharomyces cerevisiae. To allow for phenotypic complementation, a mutant strain sensitive to a series of cationic lipophilic drugs was first identified. A hemagglutinin epitope-ta...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.181.3.949-956.1999

    authors: Yelin R,Rotem D,Schuldiner S

    更新日期:1999-02-01 00:00:00

  • Analysis of mutations in the ninR region of bacteriophage lambda that bypass a requirement for lambda N antitermination.

    abstract::Two mutations in the ninR region of bacteriophage lambda that bypass a requirement for antitermination have been studied. One mutation, byp, has been cloned and mapped by marker rescue to a 417-base-pair segment in the ninR region of the genome. Analysis of the byp mutation by using promoter detection vectors, DNA seq...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.172.8.4610-4615.1990

    authors: Costantino N,Zuber M,Court D

    更新日期:1990-08-01 00:00:00

  • Characterization of the genetic locus encoding Haemophilus influenzae type b surface fibrils.

    abstract::Haemophilus influenzae is a common gram-negative pathogen that initiates infection by colonizing the upper respiratory tract epithelium. In previous work, we reported the isolation of a locus involved in expression of short, thin surface fibrils by H. influenzae type b and presented evidence that surface fibrils promo...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.178.21.6281-6287.1996

    authors: St Geme JW 3rd,Cutter D,Barenkamp SJ

    更新日期:1996-11-01 00:00:00

  • Induction of heat shock proteins by abnormal proteins results from stabilization and not increased synthesis of sigma 32 in Escherichia coli.

    abstract::Accumulation of abnormal proteins in cells of bacteria or eukaryotes can induce synthesis of a set of heat shock proteins. We examined such induction following addition of azetidine (a proline analog) or synthesis of a heterologous protein (human prourokinase) in Escherichia coli. Synthesis of heat shock proteins unde...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.176.18.5648-5653.1994

    authors: Kanemori M,Mori H,Yura T

    更新日期:1994-09-01 00:00:00