Draft genome sequence of Lactobacillus gigeriorum CRBIP 24.85T, isolated from a chicken crop.

Abstract:

:We report the draft genome of the strain Lactobacillus gigeriorum CRBIP 24.85(T), isolated from a chicken crop. The total length of the 60 scaffolds is about 1.9 Mb, with a GC content of 38% and 2,062 protein-coding sequences (CDS).

journal_name

J Bacteriol

journal_title

Journal of bacteriology

authors

Cousin S,Ma L,Creno S,Clermont D,Loux V,Bizet C,Bouchier C

doi

10.1128/JB.01427-12

subject

Has Abstract

pub_date

2012-11-01 00:00:00

pages

5973

issue

21

eissn

0021-9193

issn

1098-5530

pii

194/21/5973

journal_volume

194

pub_type

杂志文章
  • The Escherichia coli starvation gene cstC is involved in amino acid catabolism.

    abstract::Escherichia coli strains mutant in the starvation gene cstC grow normally in a mineral salts medium but are impaired in utilizing amino acids as nitrogen sources. They are also compromised in starvation survival, where amino acid catabolism is important. The cstC gene encodes a 406-amino-acid protein that closely rese...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.180.16.4287-4290.1998

    authors: Fraley CD,Kim JH,McCann MP,Matin A

    更新日期:1998-08-01 00:00:00

  • CHARACTERISTICS AND INTERMEDIATES OF SHORT-TERM C-14-O-2 INCORPORATION DURING RIBOSE OXIDATION BY HYDROGENOMONAS FACILIS.

    abstract::McFadden, B. A. (Washington State University, Pullman), and H. R. Homann. Characteristics and intermediates of short-term C(14)O(2) incorporation during ribose oxidation by Hydrogenomonas facilis. J. Bacteriol. 89:839-847. 1965.-Ribose-grown cells of Hydrogenomonas facilis, which had been suspended in growth medium an...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.89.3.839-847.1965

    authors: MCFADDEN BA,HOMANN HR

    更新日期:1965-03-01 00:00:00

  • Regulation of tryptophanyl-tRNA synthetase formation.

    abstract::A previously constructed trp-S-lacZ fusion encoding a hybrid protein with beta-galactosidase activity was subcloned from a multicopy plasmid onto a lambda vector. Single-copy lysogens of lambda trpS-lacZ were used to determine whether trpS was regulated in a manner similar to that of other aminoacyl-tRNA synthetases. ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.151.2.918-923.1982

    authors: Hall CV,Yanofsky C

    更新日期:1982-08-01 00:00:00

  • Genetic mapping of katG, a locus that affects synthesis of the bifunctional catalase-peroxidase hydroperoxidase I in Escherichia coli.

    abstract::A locus unlinked to either katE or katF that affected catalase levels in Escherichia coli was identified and localized between metB and ppc at 89.2 min on the genome. The locus was named katG. Mutations in katG which prevented the formation of both isoenzyme forms of the bifunctional catalase-peroxidase HPI were creat...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.162.2.661-667.1985

    authors: Loewen PC,Triggs BL,George CS,Hrabarchuk BE

    更新日期:1985-05-01 00:00:00

  • Substrate Specificities and Efflux Efficiencies of RND Efflux Pumps of Acinetobacter baumannii.

    abstract::Antibiotic-resistant Acinetobacter baumannii causes infections that are extremely difficult to treat. A significant role in these resistance profiles is attributed to multidrug efflux pumps, especially those belonging to the resistance-nodulation-cell division (RND) superfamily of transporters. In this study, we analy...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.00049-18

    authors: Leus IV,Weeks JW,Bonifay V,Smith L,Richardson S,Zgurskaya HI

    更新日期:2018-06-11 00:00:00

  • Iron supply to Escherichia coli by synthetic analogs of enterochelin.

    abstract::Synthetic analogs of enterochelin (enterobactin) were tested for their ability to support the growth of Escherichia coli K-12 under iron-limiting conditions. The cyclic compound MECAM [1,3,5-N.N'; N"-tris-(2,3-dihydroxybenzoyl)-triamino-methylbenzene] and its N-methyl derivative Me3MECAM promoted growth, whereas the 2...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.153.1.109-115.1983

    authors: Heidinger S,Braun V,Pecoraro VL,Raymond KN

    更新日期:1983-01-01 00:00:00

  • Comparative genome sequence analysis of multidrug-resistant Acinetobacter baumannii.

    abstract::The recent emergence of multidrug resistance (MDR) in Acinetobacter baumannii has raised concern in health care settings worldwide. In order to understand the repertoire of resistance determinants and their organization and origins, we compared the genome sequences of three MDR and three drug-susceptible A. baumannii ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.00834-08

    authors: Adams MD,Goglin K,Molyneaux N,Hujer KM,Lavender H,Jamison JJ,MacDonald IJ,Martin KM,Russo T,Campagnari AA,Hujer AM,Bonomo RA,Gill SR

    更新日期:2008-12-01 00:00:00

  • Cloning, characterization, and functional expression of acs, the gene which encodes acetyl coenzyme A synthetase in Escherichia coli.

    abstract::Acetyl coenzyme A synthetase (Acs) activates acetate to acetyl coenzyme A through an acetyladenylate intermediate; two other enzymes, acetate kinase (Ack) and phosphotransacetylase (Pta), activate acetate through an acetyl phosphate intermediate. We subcloned acs, the Escherichia coli open reading frame purported to e...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.177.10.2878-2886.1995

    authors: Kumari S,Tishel R,Eisenbach M,Wolfe AJ

    更新日期:1995-05-01 00:00:00

  • Transcription activation by NtcA in the absence of consensus NtcA-binding sites in an anabaena heterocyst differentiation gene promoter.

    abstract::Heterocyst differentiation is orchestrated by the N control transcriptional regulator NtcA and the differentiation-specific factor HetR. In Anabaena sp. strain PCC 7120, the devBCA operon is expressed from two different promoters activated upon N stepdown. The distal devB promoter (transcription start point [TSP] loca...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.05994-11

    authors: Camargo S,Valladares A,Flores E,Herrero A

    更新日期:2012-06-01 00:00:00

  • Does the Semiconservative Nature of DNA Replication Facilitate Coherent Phenotypic Diversity?

    abstract::It has been clear for over sixty years that the principal method whereby cells replicate and segregate their DNA is semiconservative. It is much less clear why it should be like this rather than, say, conservative. Recently, evidence has accumulated that supports the hypothesis that one of the functions of the cell cy...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章,评审

    doi:10.1128/JB.00119-19

    authors: Norris V

    更新日期:2019-05-22 00:00:00

  • RNase E affects the expression of the acyl-homoserine lactone synthase gene sinI in Sinorhizobium meliloti.

    abstract::Quorum sensing of Sinorhizobium meliloti relies on N-acyl-homoserine lactones (AHLs) as autoinducers. AHL production increases at high population density, and this depends on the AHL synthase SinI and two transcriptional regulators, SinR and ExpR. Our study demonstrates that ectopic expression of the gene rne, coding ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.01471-13

    authors: Baumgardt K,Charoenpanich P,McIntosh M,Schikora A,Stein E,Thalmann S,Kogel KH,Klug G,Becker A,Evguenieva-Hackenberg E

    更新日期:2014-04-01 00:00:00

  • Analysis for antigenic similarities among the 30S ribosomal proteins of Escherichia coli.

    abstract::Antiserum was made against a single 30S protein, 30S-7. The amount of complement fixed by total 30S protein in the presence of this antiserum indicated that protein 30S-7 was the major antigen in the mixture of proteins. Each of the 30S ribosomal proteins was tested for cross-reactivity with anti-30S-7. This was done ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.108.2.910-915.1971

    authors: Strnad BC,Sypherd PS

    更新日期:1971-11-01 00:00:00

  • Modulation of Response Regulator CheY Reaction Kinetics by Two Variable Residues That Affect Conformation.

    abstract::Microorganisms and plants utilize two-component systems to regulate adaptive responses to changing environmental conditions. Sensor kinases detect stimuli and alter their autophosphorylation activity accordingly. Signal propagation occurs via the transfer of phosphoryl groups from upstream kinases to downstream respon...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.00089-20

    authors: Straughn PB,Vass LR,Yuan C,Kennedy EN,Foster CA,Bourret RB

    更新日期:2020-07-09 00:00:00

  • Mercury and cadmium resistances mediated by the penicillinase plasmid in Staphylococcus aureus.

    abstract::Resistance of Staphylococcus aureus mediated by the penicillinase (Pc-ase) plasmid to divalent metal ions of Hg and Cd was found to be controlled by different mechanisms. The Hg resistance of the Pc-ase plasmid-carrying organisms is based upon a process of changing the ion incorporated in the cell into a somewhat inno...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.117.1.1-7.1974

    authors: Kondo I,Ishikawa T,Nakahara H

    更新日期:1974-01-01 00:00:00

  • Properties of D-arabinose isomerase purified from two strains of Escherichia coli.

    abstract::d-Arabinose isomerase (EC 5.3.1.3) has been isolated from l-fucose-induced cultures of Escherichia coli K-12 and d-arabinose-induced cultures of E. coli B/r. Both enzymes were homogeneous in an ultracentrifuge and migrated as single bands upon disc electrophoresis in acrylamide gels. The s(20,w) was 14.5 x 10(-13) sec...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.113.2.687-696.1973

    authors: Boulter JR,Gielow WO

    更新日期:1973-02-01 00:00:00

  • Biosynthesis of riboflavin: cloning, sequencing, mapping, and expression of the gene coding for GTP cyclohydrolase II in Escherichia coli.

    abstract::GTP cyclohydrolase II catalyzes the first committed step in the biosynthesis of riboflavin. The gene coding for this enzyme in Escherichia coli has been cloned by marker rescue. Sequencing indicated an open reading frame of 588 bp coding for a 21.8-kDa peptide of 196 amino acids. The gene was mapped to a position at 2...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.175.13.4045-4051.1993

    authors: Richter G,Ritz H,Katzenmeier G,Volk R,Kohnle A,Lottspeich F,Allendorf D,Bacher A

    更新日期:1993-07-01 00:00:00

  • Mating types and macrocyst formation in Dictyostelium.

    abstract::Macrocysts have been found among strains of Dictyostelium rosarium Raper and Cavender (K. B. Raper and J. C. Cavender, J. Elisha Mitchell Sci. Soc. 84:31-47, 1968). Strains that exhibit mating capabilities could be classified into one of three mating types: A1, A2, or A3. Each mating type was self-incompatible but cro...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.147.3.1049-1053.1981

    authors: Chang MT,Raper KB

    更新日期:1981-09-01 00:00:00

  • pdc1(0) mutants of Saccharomyces cerevisiae give evidence for an additional structural PDC gene: cloning of PDC5, a gene homologous to PDC1.

    abstract::The PDC1 gene coding for a pyruvate decarboxylase (PDC; EC 4.1.1.1) was deleted from the Saccharomyces cerevisiae genome. The resulting pdc1(0) mutants were able to grow on glucose and still contained 60 to 70% of the wild-type PDC activity. Two DNA fragments with sequences homologous to that of the PDC1 gene were clo...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.172.2.678-685.1990

    authors: Seeboth PG,Bohnsack K,Hollenberg CP

    更新日期:1990-02-01 00:00:00

  • Nucleotide sequence and transcriptional analysis of the Escherichia coli agp gene encoding periplasmic acid glucose-1-phosphatase.

    abstract::The nucleotide sequence of the agp gene, which encodes a periplasmic glucose-1-phosphatase, was determined. The deduced amino acid sequence corresponds to a 413-amino-acid-residue polypeptide with a typical hydrophobic signal sequence of 22 amino acids. The mature protein lacks the N-terminal signal peptide and has a ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.172.2.802-807.1990

    authors: Pradel E,Marck C,Boquet PL

    更新日期:1990-02-01 00:00:00

  • CovR and VicRKX Regulate Transcription of the Collagen Binding Protein Cnm of Streptococcus mutans.

    abstract::Cnm is a surface-associated protein present in a subset of Streptococcus mutans strains that mediates binding to extracellular matrices, intracellular invasion, and virulence. Here, we showed that cnm transcription is controlled by the global regulators CovR and VicRKX. In silico analysis identified multiple putative ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.00141-18

    authors: Araújo Alves L,Ganguly T,Mattos-Graner RO,Kajfasz J,Harth-Chu EN,Lemos JA,Abranches J

    更新日期:2018-11-06 00:00:00

  • Separation and characterization of six (1 leads to 3)-beta-glucanases from Saccharomyces cerevisiae.

    abstract::Using a system of chromatography through columns of DEAE-Bio-Gel, HTP-Bio-Gel, and CM-Bio-Gel, we isolated and characterized six different (1 leads to 3)-beta-glucanases from cell wall autolysates and cell extracts of Saccharomyces cerevisiae haploid strain 2180B. These enzymes were designated glucanases I, II, IIIA, ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.156.3.1204-1213.1983

    authors: Hien NH,Fleet GH

    更新日期:1983-12-01 00:00:00

  • Flagellin glycosylation island in Pseudomonas syringae pv. glycinea and its role in host specificity.

    abstract::The deduced amino acid sequences of the flagellins of Pseudomonas syringae pv. tabaci and P. syringae pv. glycinea are identical; however, their abilities to induce a hypersensitive reaction are clearly different. The reason for the difference seems to depend on the posttranslational modification of the flagellins. To...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.185.22.6658-6665.2003

    authors: Takeuchi K,Taguchi F,Inagaki Y,Toyoda K,Shiraishi T,Ichinose Y

    更新日期:2003-11-01 00:00:00

  • Single-stranded DNA binding by F TraI relaxase and helicase domains is coordinately regulated.

    abstract::Transfer of conjugative plasmids requires relaxases, proteins that cleave one plasmid strand sequence specifically. The F plasmid relaxase TraI (1,756 amino acids) is also a highly processive DNA helicase. The TraI relaxase activity is located within the N-terminal approximately 300 amino acids, while helicase motifs ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.00154-10

    authors: Dostál L,Schildbach JF

    更新日期:2010-07-01 00:00:00

  • In vitro transcription of the nitrogen fixation regulatory operon nifLA of Klebsiella pneumoniae.

    abstract::In vitro transcription from the promoter for the nitrogen fixation regulatory operon nifLA of K. pneumoniae requires four protein fractions: the core form of RNA polymerase; NTRA, an alternate sigma factor; NTRC, an auxiliary DNA-binding protein; and NTRB, a bifunctional enzyme that controls the activity of NTRC by co...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.169.6.2876-2880.1987

    authors: Wong PK,Popham D,Keener J,Kustu S

    更新日期:1987-06-01 00:00:00

  • Site-specific integration and expression of a developmental promoter in Myxococcus xanthus.

    abstract::A series of intercellular signals are involved in the regulation of gene expression during fruiting body formation of Myxococcus xanthus. Mutations which block cell interactions, such as csgA (formerly known as spoC), also prevent expression of certain developmentally regulated promoters. csgA+ cells containing Tn5 la...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.170.12.5552-5556.1988

    authors: Li SF,Shimkets LJ

    更新日期:1988-12-01 00:00:00

  • Permeability of Pseudomonas aeruginosa outer membrane to hydrophilic solutes.

    abstract::Pseudomonas aeruginosa is usually resistant to a wide variety of antibacterial agents, and it has been inferred, on the basis of indirect evidence, that this was due to the low permeability of its outer membrane. We determined the permeability of P. aeruginosa outer membrane directly, by measuring the rates of hydroly...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:

    authors: Yoshimura F,Nikaido H

    更新日期:1982-11-01 00:00:00

  • A combination of sbmA and tolC mutations in Escherichia coli K-12 Tn10-carrying strains results in hypersusceptibility to tetracycline.

    abstract::Previously, we demonstrated that Escherichia coli tolC mutations reduce the high-level resistance to tetracycline afforded by the transposon Tn10-encoded TetA pump from resistance at 200 microg/ml to resistance at 40 microg/ml. In this study, we found that the addition of an sbmA mutation to a tolC::Tn10 mutant exacer...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.01844-07

    authors: de Cristóbal RE,Vincent PA,Salomón RA

    更新日期:2008-02-01 00:00:00

  • Replication of a plasmid lacking the normal site for initiation of one strand.

    abstract::The origin of replication of the plasmid R1162 contains an initiation site for the synthesis of each DNA strand. When one of these sites (oriL) is deleted, synthesis on the corresponding strand is no longer initiated efficiently in vitro by the R1162-encoded replication proteins, and the plasmid is no longer stably ma...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.178.16.4870-4876.1996

    authors: Becker EC,Zhou H,Meyer RJ

    更新日期:1996-08-01 00:00:00

  • Bacillus subtilis acyl carrier protein is encoded in a cluster of lipid biosynthesis genes.

    abstract::A cluster of Bacillus subtilis fatty acid synthetic genes was isolated by complementation of an Escherichia coli fabD mutant encoding a thermosensitive malonyl coenzyme A-acyl carrier protein transacylase. The B. subtilis genomic segment contains genes that encode three fatty acid synthetic proteins, malonyl coenzyme ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.178.16.4794-4800.1996

    authors: Morbidoni HR,de Mendoza D,Cronan JE Jr

    更新日期:1996-08-01 00:00:00

  • Characterization and regulation of the genes for a novel anthranilate 1,2-dioxygenase from Burkholderia cepacia DBO1.

    abstract::Anthranilate (2-aminobenzoate) is an important intermediate in tryptophan metabolism. In order to investigate the degradation of tryptophan through anthranilate by Burkholderia cepacia, several plasposon mutations were constructed of strain DBO1 and one mutant with the plasposon insertion in the anthranilate dioxygena...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.185.19.5871-5881.2003

    authors: Chang HK,Mohseni P,Zylstra GJ

    更新日期:2003-10-01 00:00:00