The origins of the Rag genes--from transposition to V(D)J recombination.

Abstract:

:The recombination activating genes 1 and 2 (Rag1 and Rag2) encode the key enzyme that is required for the generation of the highly diversified antigen receptor repertoire central to adaptive immunity. The longstanding model proposed that this gene pair was acquired by horizontal gene transfer to explain its abrupt appearance in the vertebrate lineage. The analyses of the enormous amount of sequence data created by many genome sequencing projects now provide the basis for a more refined model as to how this unique gene pair evolved from a selfish DNA transposon into a sophisticated DNA recombinase essential for immunity.

journal_name

Semin Immunol

journal_title

Seminars in immunology

authors

Fugmann SD

doi

10.1016/j.smim.2009.11.004

subject

Has Abstract

pub_date

2010-02-01 00:00:00

pages

10-6

issue

1

eissn

1044-5323

issn

1096-3618

pii

S1044-5323(09)00119-5

journal_volume

22

pub_type

杂志文章,评审
  • Host protective roles of type 2 immunity: parasite killing and tissue repair, flip sides of the same coin.

    abstract::Metazoan parasites typically induce a type 2 immune response, characterized by T helper 2 (Th2) cells that produce the cytokines IL-4, IL-5 and IL-13 among others. The type 2 response is host protective, reducing the number of parasites either through direct killing in the tissues, or expulsion from the intestine. Typ...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2014.06.003

    authors: Allen JE,Sutherland TE

    更新日期:2014-08-01 00:00:00

  • Follicular dendritic cell networks of primary follicles and germinal centers: phenotype and function.

    abstract::Follicular dendritic cells (FDCs) were identified decades ago by their ability to retain immune complexes and more recent findings indicate that they are a source of B cell attractants and trophic factors. New imaging studies have shown that B cells closely associate with their dendritic processes during migration. He...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2007.12.001

    authors: Allen CD,Cyster JG

    更新日期:2008-02-01 00:00:00

  • BAFF, APRIL and human B cell disorders.

    abstract::B cells require signals from multiple sources for their development from precursor cells, and differentiation into effector cells. BAFF has been identified as a critical regulator of B cell development and differentiation. Defects in the production of BAFF and/or expression of its receptors have been associated with a...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2006.04.004

    authors: Tangye SG,Bryant VL,Cuss AK,Good KL

    更新日期:2006-10-01 00:00:00

  • Humoral immunity and antibody-mediated rejection in solid organ transplantation.

    abstract::The humoral arm of the immune system provides robust protection against extracellular pathogens via the production of antibody molecules that neutralize or facilitate the destruction of microorganisms. However, the humoral immune system also provides a significant barrier to solid organ transplantation due to the anti...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2011.08.021

    authors: Montgomery RA,Cozzi E,West LJ,Warren DS

    更新日期:2011-08-01 00:00:00

  • Toll-like receptors and acquired immunity.

    abstract::Toll-like receptors are a family of pattern recognition receptors (PRRs) that evolved to detect microbial infection. These receptors recognize conserved molecular products derived from different classes of microorganisms, including Gram-positive and -negative bacteria, fungi, protozoa and viruses. Following recognitio...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2003.10.006

    authors: Pasare C,Medzhitov R

    更新日期:2004-02-01 00:00:00

  • The importance of lymphocyte trafficking in regulating blood lymphocyte levels during HIV and SIV infections.

    abstract::In humans, blood is commonly monitored to provide surrogates of disease progression and assess immune status. However, the varied, rapid and atypical alterations in lymphocyte subsets which may occur in blood in response to pathogens, are not predictive of changes in the bulk of the immune system. A hallmark of human ...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1006/smim.1999.0169

    authors: Rosenberg YJ,Janossy G

    更新日期:1999-04-01 00:00:00

  • A role for "self" in T-cell activation.

    abstract::The mechanisms by which alphabeta T-cells are selected in the thymus and then recognize peptide MHC (pMHC) complexes in the periphery remain an enigma. Recent work particularly with respect to quantification of T-cell sensitivity and the role of self-ligands in T-cell activation has provided some important clues to th...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2007.04.003

    authors: Krogsgaard M,Juang J,Davis MM

    更新日期:2007-08-01 00:00:00

  • Molecular and epigenetic basis of macrophage polarized activation.

    abstract::Macrophages are unique cells for origin, heterogeneity and plasticity. At steady state most of macrophages are derived from fetal sources and maintained in adulthood through self-renewing. Despite sharing common progenitors, a remarkable heterogeneity characterized tissue-resident macrophages indicating that local sig...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2015.10.003

    authors: Porta C,Riboldi E,Ippolito A,Sica A

    更新日期:2015-08-01 00:00:00

  • Complement inhibition in pre-clinical models of periodontitis and prospects for clinical application.

    abstract::Periodontitis is a dysbiotic inflammatory disease leading to the destruction of the tooth-supporting tissues. Current therapies are not always effective and this prevalent oral disease continues to be a significant health and economic burden. Early clinical studies have associated periodontitis with elevated complemen...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2016.03.006

    authors: Hajishengallis G,Hajishengallis E,Kajikawa T,Wang B,Yancopoulou D,Ricklin D,Lambris JD

    更新日期:2016-06-01 00:00:00

  • Functional specialization of the glycosylphosphatidylinositol membrane anchor.

    abstract::The discovery of GPI-anchored membrane proteins presented a conundrum for membrane biologists. What could the special purpose be for this type of membrane anchor and why couldn't a transmembrane anchor do the same job? Recent information from several different sources is beginning to provide answers to these questions...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1006/smim.1994.1013

    authors: Anderson RG

    更新日期:1994-04-01 00:00:00

  • Immunological memory against viruses.

    abstract::Viral infections often result in long-term immunological memory. This article reviews the phenotypic changes seen in memory T cells and suggests a re-evaluation of the current dogma that T cell memory is maintained by persistence of antigen. ...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:

    authors: Ahmed R

    更新日期:1992-04-01 00:00:00

  • Harnessing dendritic cells in inflammatory skin diseases.

    abstract::The skin immune system harbors a complex network of dendritic cells (DCs). Recent studies highlight a diverse functional specialization of skin DC subsets. In addition to generating cellular and humoral immunity against pathogens, skin DCs are involved in tolerogenic mechanisms to ensure the maintenance of immune home...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2011.01.006

    authors: Chu CC,Di Meglio P,Nestle FO

    更新日期:2011-02-01 00:00:00

  • Human T cell receptor gamma delta + T cells.

    abstract::TCR gamma delta + T cells represent a minority of CD3+ T cells in many species including man. The molecular structure of the TCR gamma and delta loci in man is well understood. The gamma and delta loci contain V, D, J and C gene segments. These segments do not rearrange randomly but in a coordinated, ordered fashion d...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:

    authors: Spits H

    更新日期:1991-03-01 00:00:00

  • Immunology 101 at poxvirus U: immune evasion genes.

    abstract::Poxviruses, unlike some other large DNA viruses, do not undergo a latent stage but rely on the expression of viral proteins to evade host immune responses. Of the many poxviral evasion genes identified, most target cytokines or other innate immune defenses. Resistance to interferons appears to be a priority as there a...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1006/smim.2000.0296

    authors: Moss B,Shisler JL

    更新日期:2001-02-01 00:00:00

  • Tissular T(regs): a unique population of adipose-tissue-resident Foxp3+CD4+ T cells that impacts organismal metabolism.

    abstract::Foxp3+CD4+ regulatory T (T(reg)) cells are a key population in controlling the immune response. Recently, their roles have been expanded to broader, non-immune, contexts, in particular the metabolic consequences downstream of obesity-induced inflammation, e.g. type-2 diabetes and cardiovascular disease. This review hi...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2011.06.002

    authors: Cipolletta D,Kolodin D,Benoist C,Mathis D

    更新日期:2011-12-01 00:00:00

  • PTX3 as a paradigm for the interaction of pentraxins with the complement system.

    abstract::Pentraxins are highly conserved components of the humoral arm of innate immunity. They include the short pentraxins C reactive protein (CRP) and serum amyloid P component (SAP), and the long pentraxin PTX3. These are soluble pattern-recognition molecules that are present in the blood and body fluids, and share the abi...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2013.05.002

    authors: Inforzato A,Doni A,Barajon I,Leone R,Garlanda C,Bottazzi B,Mantovani A

    更新日期:2013-02-01 00:00:00

  • Orchestration of pulmonary T cell immunity during Mycobacterium tuberculosis infection: immunity interruptus.

    abstract::Despite the introduction almost a century ago of Mycobacterium bovis BCG (BCG), an attenuated form of M. bovis that is used as a vaccine against Mycobacterium tuberculosis, tuberculosis remains a global health threat and kills more than 1.5 million people each year. This is mostly because BCG fails to prevent pulmonar...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2014.09.003

    authors: Behar SM,Carpenter SM,Booty MG,Barber DL,Jayaraman P

    更新日期:2014-12-01 00:00:00

  • The potential of metabolic profiling for vaccine development.

    abstract::Recent technological advances have provided deeper insights into the role of small molecules in biological processes. Metabolic profiling has thus entered the arena of -omics studies and rapidly proven its value both as stand-alone and as complement to other more advanced approaches, notably transcriptomics. Here we d...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2018.07.002

    authors: Weiner J 3rd,Mohney RP,Kaufmann SHE

    更新日期:2018-10-01 00:00:00

  • Cancer immunotherapy targeting neoantigens.

    abstract::Neoantigens are antigens encoded by tumor-specific mutated genes. Studies in the past few years have suggested a key role for neoantigens in cancer immunotherapy. Here we review the discoveries of neoantigens in the past two decades and the current advances in neoantigen identification. We also discuss the potential b...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2015.11.002

    authors: Lu YC,Robbins PF

    更新日期:2016-02-01 00:00:00

  • ALPS: an autoimmune human lymphoproliferative syndrome associated with abnormal lymphocyte apoptosis.

    abstract::Apoptosis of activated lymphocytes is critical to immune homeostasis. The cell surface receptor Fas is an important mediator of lymphocyte apoptosis; defective Fas expression causes accumulation of lymphocytes and autoimmune disease in mice. Apoptosis defects due to mutations of Fas have also been found in a rare huma...

    journal_title:Seminars in immunology

    pub_type: 杂志文章

    doi:10.1006/smim.1996.0056

    authors: Puck JM,Sneller MC

    更新日期:1997-02-01 00:00:00

  • OX-40: life beyond the effector T cell stage.

    abstract::The OX-40 receptor (OX-40R) is a transmembrane protein found on the surface of activated CD4(+) T cells. When engaged by an agonist such as anti-OX-40 antibody or the OX-40 ligand (OX-40L) during antigen presentation to T cell lines, the OX-40R generates a costimulatory signal that is as potent as CD28 costimulation. ...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1006/smim.1998.0146

    authors: Weinberg AD,Vella AT,Croft M

    更新日期:1998-12-01 00:00:00

  • Recent advances in clinical development of leukotriene B4 pathway drugs.

    abstract::The LTB4 pathway is an attractive target for therapeutic drug development. Two broad classes of drugs have been pursued: antagonists of the primary LTB4 receptors (BLT1 and BLT2) and inhibitors of LTA4 Hydrolase (LTA4H), the rate limiting enzyme in the production of LTB4. An initial wave of effort culminated in the 19...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2017.08.007

    authors: Bhatt L,Roinestad K,Van T,Springman EB

    更新日期:2017-10-01 00:00:00

  • Specificity in cancer immunotherapy.

    abstract::From the earliest days in the field of tumor immunology three questions have been asked: do cancer cells express tumor-specific antigens, does the immune system recognize these antigens and if so, what is their biochemical nature? We now know that truly tumor-specific antigens exist, that they are caused by somatic mu...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2008.07.001

    authors: Schietinger A,Philip M,Schreiber H

    更新日期:2008-10-01 00:00:00

  • The role of B cells and humoral immunity in Mycobacterium tuberculosis infection.

    abstract::Mycobacterium tuberculosis remains a major public health burden. It is generally thought that while B cell- and antibody-mediated immunity plays an important role in host defense against extracellular pathogens, the primary control of intracellular microbes derives from cellular immune mechanisms. Studies on the immun...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2014.10.005

    authors: Chan J,Mehta S,Bharrhan S,Chen Y,Achkar JM,Casadevall A,Flynn J

    更新日期:2014-12-01 00:00:00

  • Homeostatic chemokines in development, plasticity, and functional organization of the intestinal immune system.

    abstract::In the past decade accumulating evidence supported the view that the immune system should be regarded as trust consisting of several branches. In this review, we will first introduce the architectural features comprising the intestinal immune system emphasising its plasticity and subsequently discuss the concepts desc...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2008.03.001

    authors: Förster R,Pabst O,Bernhardt G

    更新日期:2008-06-01 00:00:00

  • Chemokines in rapid leukocyte adhesion triggering and migration.

    abstract::Leukocyte subsets are recruited from the blood to lymphoid and non-lymphoid tissues via a multi-step process that involves distinct adhesive and activation steps. Chemokines, a family of chemotactic cytokines that signal through G-protein-coupled receptors, play critical roles in regulating the leukocyte recruitment c...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1006/smim.2001.0345

    authors: Johnston B,Butcher EC

    更新日期:2002-04-01 00:00:00

  • The epigenetics of inflammaging: The contribution of age-related heterochromatin loss and locus-specific remodelling and the modulation by environmental stimuli.

    abstract::A growing amount of evidences indicates that inflammaging - the chronic, low grade inflammation state characteristic of the elderly - is the result of genetic as well as environmental or stochastic factors. Some of these, such as the accumulation of senescent cells that are persistent during aging or accompany its pro...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2018.10.009

    authors: Nardini C,Moreau JF,Gensous N,Ravaioli F,Garagnani P,Bacalini MG

    更新日期:2018-12-01 00:00:00

  • Senescent cell clearance by the immune system: Emerging therapeutic opportunities.

    abstract::Senescent cells (SCs) arise from normal cells in multiple organs due to inflammatory, metabolic, DNA damage, or tissue damage signals. SCs are non-proliferating but metabolically active cells that can secrete a range of pro-inflammatory and proteolytic factors as part of the senescence-associated secretory phenotype (...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2019.04.003

    authors: Prata LGPL,Ovsyannikova IG,Tchkonia T,Kirkland JL

    更新日期:2018-12-01 00:00:00

  • Mechanisms of antigen receptor evolution.

    abstract::The adaptive immune system, which utilizes RAG-mediated recombination to diversify immune receptors, arose in ancestors of the jawed vertebrates approximately 500 million years ago. Homologs of immunoglobulins (Igs), T cell antigen receptors (TCRs), major histocompatibility complex (MHC) I and II, and the recombinatio...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2004.08.001

    authors: Eason DD,Cannon JP,Haire RN,Rast JP,Ostrov DA,Litman GW

    更新日期:2004-08-01 00:00:00

  • Involvement of SLP-65 and Btk in tumor suppression and malignant transformation of pre-B cells.

    abstract::Signals from the precursor-B cell receptor (pre-BCR) are essential for selection and clonal expansion of pre-B cells that have performed productive immunoglobulin heavy chain V(D)J recombination. In the mouse, the downstream signaling molecules SLP-65 and Btk cooperate to limit proliferation and induce differentiation...

    journal_title:Seminars in immunology

    pub_type: 杂志文章,评审

    doi:10.1016/j.smim.2005.10.002

    authors: Hendriks RW,Kersseboom R

    更新日期:2006-02-01 00:00:00