Mass spectrometry-based functional proteomics: from molecular machines to protein networks.

Abstract:

:The study of protein-protein interactions by mass spectrometry is an increasingly important part of post-genomics strategies to understand protein function. A variety of mass spectrometry-based approaches allow characterization of cellular protein assemblies under near-physiological conditions and subsequent assignment of individual proteins to specific molecular machines, pathways and networks, according to an increasing level of organizational complexity. An appropriate analytical strategy can be individually tailored--from an in-depth analysis of single complexes to a large-scale characterization of entire molecular pathways or even an analysis of the molecular organization of entire expressed proteomes. Here we review different options regarding protein-complex purification strategies, mass spectrometry analysis and bioinformatic methods according to the specific question that is being addressed.

journal_name

Nat Methods

journal_title

Nature methods

authors

Köcher T,Superti-Furga G

doi

10.1038/nmeth1093

subject

Has Abstract

pub_date

2007-10-01 00:00:00

pages

807-15

issue

10

eissn

1548-7091

issn

1548-7105

pii

nmeth1093

journal_volume

4

pub_type

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