Peptide mass fingerprinting- and 2-DE/MS-based analysis of the biodegradation potential for monocyclic aromatic hydrocarbons in Pseudomonas sp.

Abstract:

:The combined analysis of peptide mass fingerprinting and 2-DE/MS using the induced and selected protein spots following growth of Pseudomonas sp. DU102 on benzoate or p-hydroxybenzoate revealed not only alpha- and beta-subunits of protocatechuate 3,4-dioxygenase but also catechol 1,2-dioxygenase responsible for ortho-pathway through ring-cleavage of aromatic compounds. Toluate 1,2-dioxygenase and p-hydroxybenzoate hydroxylase were also identified. Purification of intradiol dioxygenases such as catechol 1,2-dioxygenase and protocatechuate 3,4-dioxygenase from the benzoate or p-hydroxybenzoate culture makes it possible to trace the biodegradation pathway of strain DU102 for monocyclic aromatic hydrocarbons. Interestingly, vanillin-induced protocatechuate 3,4-dioxygenase was identical in amino acid sequences with protocatechuate 3,4-dioxygenase from p-hydroxybenzoate.

journal_name

Biotechnol Lett

journal_title

Biotechnology letters

authors

Kim SI,Park SH,Kim JW,Leem SH,Shin DJ,Kim SH,Lee DH,Kahng HY

doi

10.1007/s10529-007-9443-1

subject

Has Abstract

pub_date

2007-10-01 00:00:00

pages

1475-81

issue

10

eissn

0141-5492

issn

1573-6776

journal_volume

29

pub_type

杂志文章
  • Cell line development for biomanufacturing processes: recent advances and an outlook.

    abstract::At the core of a biomanufacturing process for recombinant proteins is the production cell line. It influences the productivity and product quality. Its characteristics also dictate process development, as the process is optimized to complement the producing cell to achieve the target productivity and quality. Advances...

    journal_title:Biotechnology letters

    pub_type: 杂志文章,评审

    doi:10.1007/s10529-015-1843-z

    authors: Le H,Vishwanathan N,Jacob NM,Gadgil M,Hu WS

    更新日期:2015-08-01 00:00:00

  • Therapeutic potential of human umbilical cord blood mesenchymal stem cells on erectile function in rats with cavernous nerve injury.

    abstract:OBJECTIVE:To evaluate the therapeutic potential of human umbilical cord blood mesenchymal stem cells (hUCBMSCs) on promoting erectile function in a rat model of bilateral cavernous nerve (CN) crush injury. RESULTS:Fifty male Sprague-Dawley rats were randomly assigned to sham + PBS group (n = 10), BCNI (bilateral caver...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-015-1816-2

    authors: Zhu JQ,Lu HK,Cui ZQ,Wang YC,Li YH,Zhao W,Fu Q,Xu YM,Xu Y,Song LJ

    更新日期:2015-07-01 00:00:00

  • Plasma nitriding under low temperature improves the endothelial cell biocompatibility of 316L stainless steel.

    abstract:OBJECTIVES:To evaluate the effects of the surface modification of 316L stainless steel (SS) by low-temperature plasma nitriding on endothelial cells for stent applications. RESULTS:X-ray diffraction (XRD) confirmed the incorporation of nitrogen into the treated steel. The surface treatment significantly increased SS r...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-019-02657-7

    authors: Braz JKFS,Martins GM,Sabino V,Vitoriano JO,Barboza CAG,Soares AKMC,Rocha HAO,Oliveira MF,Alves Júnior C,Moura CEB

    更新日期:2019-05-01 00:00:00

  • Biotechnological implications of filamentation in Saccharomyces cerevisiae.

    abstract::The genetics governing the morphological switch from round or ovoid cells to filamentous growth in Saccharomyces cerevisiae has received significant interest in relation to sensing and signaling pathways as well as the control of cell processes including budding, elongation and adhesion. Little is known about the envi...

    journal_title:Biotechnology letters

    pub_type: 杂志文章,评审

    doi:10.1007/s10529-008-9681-x

    authors: Ceccato-Antonini SR

    更新日期:2008-07-01 00:00:00

  • Simultaneous enhanced catalytic activity and thermostability of a 1,3-1,4-β-glucanase from Bacillus amyloliqueformis by chemical modification of lysine residues.

    abstract::The thermostablility and enzymatic activity of 1,3-1,4-β-glucanase (BglA) from Bacillus amyloliquefaciens was improved by modifying five (out of 12) ε-amino groups in lysine residues with nitrous acid. The optimal modification condition for BglA was determined as 30 mM nitrous acid at, 40 °C for 30 min. The optimally-...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-014-1616-0

    authors: Niu C,Zhu L,Wang J,Li Q

    更新日期:2014-12-01 00:00:00

  • Preparation of dodecanol-tolerant strains of Yarrowia lipolytica.

    abstract::Dodecanol (1% v/v) and dodecanoic acid (1% w/v) inhibited growth of Yarrowia lipolytica in complex media supplemented with glucose but dodecanedioic acid (1% w/v) was not toxic. Dodecanol-tolerant strains were prepared from the wild type strain H222 as well as the acyl-CoA oxidase deleted (deltaPOX2, POX3, POX5) strai...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1023/b:bile.0000025890.97067.98

    authors: Smit MS,Mokgoro MM,Setati E,Nicaud JM

    更新日期:2004-05-01 00:00:00

  • Lipid production from indigenous Greek microalgae: a possible biodiesel source.

    abstract:OBJECTIVE:Microalgae gained interest for potential use as biodiesel producers, since they synthesize and accumulate significant quantities of lipids. The aim of this work was to isolate indigenous microalgae strains from Greek habitats, study their physicochemical growth conditions and finally select the best ones with...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-019-02658-6

    authors: Savvides AL,Moisi K,Katsifas EA,Karagouni AD,Hatzinikolaou DG

    更新日期:2019-05-01 00:00:00

  • Colorimetric pH measurement of animal cell culture media.

    abstract::Most animal cell culture media can be buffered using bicarbonate and high pressure CO(2) in a closed system. However, in an open system, the pH of the culture media increases continuously due to the marked difference in CO(2) pressure between the culture media and the atmosphere. Therefore, it is important to measure ...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-010-0341-6

    authors: Jang J,Moon SJ,Hong SH,Kim IH

    更新日期:2010-11-01 00:00:00

  • Monoclonal antibody purification by affinity chromatography with ligands derived from the screening of peptide combinatory libraries.

    abstract::The peptide, Ala-Pro-Ala-Arg (APAR), was selected from the screening of a tetrapeptide combinatorial synthetic library as the ligand for affinity purification of an anti-Granulocyte Macrophage-Colony Stimulating Factor (GM-CSF) monoclonal antibody (Mab) developed in mouse ascitis. The affinity chromatographic matrix o...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1023/a:1025464918453

    authors: Camperi SA,Iannucci NB,Albanesi GJ,Oggero Eberhardt M,Etcheverrigaray M,Messeguer A,Albericio F,Cascone O

    更新日期:2003-09-01 00:00:00

  • cry1 genes from Bacillus thuringiensis: specificity determination and implications for primer design.

    abstract::Some pest management programs employ PCR to identify cry1 genes from Bacillus thuringiensis to predict bacterial toxicity towards different insect pests. However, due to changes on the mode of action of the Cry proteins, new primers had to be designed to detect the new genes. Therefore, an 'in-silico' study of genetic...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-009-0088-0

    authors: Davolos CC,Guidelli-Thuler AM,de Abreu IL,Sena JA,Lemos MV

    更新日期:2009-12-01 00:00:00

  • Multiple regiospecific methylations of a flavonoid by plant O-methyltransferases expressed in E. coli.

    abstract::Quercetin was methylated with two O-methyltransferases (OMTs) expressed in E. coli. A construct (RSOMT) was designed to express two OMTs: ROMT-9, which methylates specifically at the 3'-hydroxyl group of quercetin and SOMT-2, which methylates at the 4'-hydroxyl group. Both OMT genes were driven by T7 promoters and had...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-005-3893-0

    authors: Kim BG,Shin KH,Lee Y,Hur HG,Lim Y,Ahn JH

    更新日期:2005-12-01 00:00:00

  • Construction and characterization of a novel maltose inducible expression vector in Bacillus subtilis.

    abstract::A maltose-inducible expression vector in Bacillus subtilis has been developed and characterized. The vector permitted beta-galactosidase expression at a high level (maximum activity, 8.16 U/ml) when induced and its expression was markedly repressed by glucose. Using this vector, we successfully expressed the other two...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-006-9146-z

    authors: Ming-Ming Y,Wei-Wei Z,Xi-Feng Z,Pei-Lin C

    更新日期:2006-11-01 00:00:00

  • Improved process conditions for increasing expression of MHC class II protein from a stable Drosophila S2 cell line.

    abstract:OBJECTIVES:To investigate the effects of operational process conditions on expression of MHC class II protein from a stable Drosophila S2 cell line. RESULTS:When the Drosophila S2 cells were grown in vented orbitally shaken TubeSpin bioreactor 600 containers, cell growth was improved three-fold and the yield of recomb...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-017-2440-0

    authors: Shen X,Dojcinovic D,Baldi L,Hacker DL,Luescher IF,Wurm FM

    更新日期:2018-01-01 00:00:00

  • Generation of ΔF508-CFTR T84 cell lines by CRISPR/Cas9-mediated genome editing.

    abstract:OBJECTIVES:To provide a simple method to make a stable ΔF508-CFTR-expressing T84 cell line that can be used as an efficient screening model system for ΔF508-CFTR rescue. RESULTS:CFTR knockout cell lines were generated by Cas9 with a single-guide RNA (sgRNA) targeting exon 1 of the CFTR genome, which produced indels th...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-016-2190-4

    authors: Chung WY,Song M,Park J,Namkung W,Lee J,Kim H,Lee MG,Kim JY

    更新日期:2016-12-01 00:00:00

  • Strategy for enhancing adenosine production under the guidance of transcriptional and metabolite pool analysis.

    abstract:OBJECTIVES:To rationally identify targets for enhancing adenosine production, transcription level of genes involved in adenosine synthesis of Bacillus subtilis XGL was detected during the fermentation process, complemented with metabolite pool analysis. RESULTS:PurR-regulated genes (pur operon and purA) and prs were d...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-015-1801-9

    authors: Zhang C,Du S,Liu Y,Xie X,Xu Q,Chen N

    更新日期:2015-07-01 00:00:00

  • Therapeutic applications of CRISPR/Cas9 system in gene therapy.

    abstract::Gene therapy is based on the principle of the genetic manipulation of DNA or RNA for treating and preventing human diseases. The clustered regularly interspaced short palindromic repeats/CRISPR associated nuclease9 (CRISPR/Cas9) system, derived from the acquired immune system in bacteria and archaea, has provided a ne...

    journal_title:Biotechnology letters

    pub_type: 杂志文章,评审

    doi:10.1007/s10529-018-2555-y

    authors: Mollanoori H,Teimourian S

    更新日期:2018-06-01 00:00:00

  • Over-expression of the gene (bglBC1) from Bacillus circulans encoding an endo-beta-(1-->3),(1-->4)-glucanase useful for the preparation of oligosaccharides from barley beta-glucan.

    abstract::An endo-beta-(1-->3),(1-->4)-glucanase gene (bglBC1) from Bacillus circulans ATCC21367 was modified by substituting its native promoter with a strong promoter, BJ27X, to increase expression of the gene when cloned into B. subtilis RM125 and B. megaterium ATCC14945. A 771-bp endo-beta-(1-->3),(1-->4)-glucanase open rea...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-004-4581-1

    authors: Kim KH,Kim YO,Ko BS,Youn HJ,Lee DS

    更新日期:2004-11-01 00:00:00

  • Normalization strategies for microRNA profiling experiments: a 'normal' way to a hidden layer of complexity?

    abstract::MicroRNA (miRNA) profiling is a first important step in elucidating miRNA functions. Real time quantitative PCR (RT-qPCR) and microarray hybridization approaches as well as ultra high throughput sequencing of miRNAs (small RNA-seq) are popular and widely used profiling methods. All of these profiling approaches face s...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-010-0380-z

    authors: Meyer SU,Pfaffl MW,Ulbrich SE

    更新日期:2010-12-01 00:00:00

  • Identification of key pathways and differentially expressed genes in bronchopulmonary dysplasia using bioinformatics analysis.

    abstract:OBJECTIVES:The objective of this study was to discover unknown differentially expressed genes (DEGs) associated with bronchopulmonary dysplasia (BPD), analyze their functions and enriched signaling pathways, and identify hub genes correlating with BPD incidence and evolvement. RESULTS:Of 1289 DEGs identified, 568 were...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-020-02986-y

    authors: Yan W,Jiang M,Zheng J

    更新日期:2020-12-01 00:00:00

  • Combined effects of phytohormone, indole-3-butyric acid, and methyl jasmonate on root growth and ginsenoside production in adventitious root cultures of Panax ginseng C.A. Meyer.

    abstract::Indole-3-butyric acid at 25 microM with methyl jasmonate (MJ) at 100 microM in Panax ginseng synergistically stimulated both root growth and ginsenoside accumulation compared with 100 microM MJ alone. Productivity of ginsenoside was 10 mg l(-1) d(-1) compared to 7.3 mg l(-1) d(-1) with MJ elicitation alone. ...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-007-9442-2

    authors: Kim YS,Yeung EC,Hahn EJ,Paek KY

    更新日期:2007-11-01 00:00:00

  • Enhancement of thymidine production in E. coli by eliminating repressors regulating the carbamoyl phosphate synthetase operon.

    abstract:PURPOSE OF WORK:Thymidine is an important precursor in antiviral drugs. We have enhanced thymidine production in E. coli by eliminating the repressors in the transcription of the gene coding for carbamoyl phosphate synthetase. The operon for carbamoyl phosphate synthetase (CarAB) in the thymidine biosynthesis regulator...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-010-0413-7

    authors: Koo BS,Hyun HH,Kim SY,Kim CH,Lee HC

    更新日期:2011-01-01 00:00:00

  • Enhancement of phase separation by the addition of de-emulsifiers to three-phase (diesel oil/biocatalyst/aqueous phase) emulsion in diesel biodesulfurization.

    abstract::Ethanol, added as a de-emulsifier to separate oil and biocatalyst (or bacterial cells) from a three-phase (oil/biocatalyst/aqueous phase) emulsion, formed in diesel biodesulfurization employing Gordonia nitida, improved oil recovery by centrifugation from about 50% in its absence to almost 100% at 3% (v/v). The biocat...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1023/a:1021750719337

    authors: Choi OK,Choi KS,Ryu HW,Chang YK

    更新日期:2003-01-01 00:00:00

  • Hydrolysis of polyesters by serine proteases.

    abstract::The substrate specificity of alpha-chymotrypsin and other serine proteases, trypsin, elastase, proteinase K and subtilisin, towards hydrolysis of various polyesters was examined using poly(L-lactide) (PLA), poly(beta-hydroxybutyrate) (PHB), poly(ethylene succinate) (PES), poly(ethylene adipate) (PEA), poly(butylene su...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-005-2217-8

    authors: Lim HA,Raku T,Tokiwa Y

    更新日期:2005-04-01 00:00:00

  • The tandem affinity purification technology: an overview.

    abstract::Tandem affinity purification (TAP) is a methodology for the isolation of protein complexes from endogenous sources. It involves incorporation of a dual-affinity tag into the protein of interest and introduction of the construct into desired cell lines or organisms. Using the two affinity handles, the protein complex a...

    journal_title:Biotechnology letters

    pub_type: 杂志文章,评审

    doi:10.1007/s10529-011-0592-x

    authors: Li Y

    更新日期:2011-08-01 00:00:00

  • Characterization of decrystallized chitosan and its application in biosorption of textile dyes.

    abstract::Decrystallized chitosan was produced from shrimp shells with a low degree of crystallinity (10%) and a high anionic dye binding capacity. Raw, mixed dye wastewater from a textile factory was efficiently decolorized using decrystallized chitosan that was more efficient than using normal chitosan and activated carbon. D...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1023/a:1024562900548

    authors: Trung TS,Ng CH,Stevens WF

    更新日期:2003-07-01 00:00:00

  • A coupled thermodynamic and metabolic control analysis methodology and its evaluation on glycerol biosynthesis in Saccharomyces cerevisiae.

    abstract::A coupled in silico thermodynamic and probabilistic metabolic control analysis methodology was verified by applying it to the glycerol biosynthetic pathway in Saccharomyces cerevisiae. The methodology allows predictions even when detailed knowledge of the enzyme kinetics is lacking. In a metabolic steady state, we fou...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-014-1675-2

    authors: Birkenmeier M,Mack M,Röder T

    更新日期:2015-02-01 00:00:00

  • Mercury tolerance of thermophilic Bacillus sp. and Ureibacillus sp.

    abstract::Although resistance of microorganisms to Hg(II) salts has been widely investigated and resistant strains have been reported from many eubacterial genera, there are few reports of mercuric ion resistance in extremophilic microorganisms. Moderately thermophilic mercury resistant bacteria were selected by growth at 62 de...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-005-2723-8

    authors: Glendinning KJ,Macaskie LE,Brown NL

    更新日期:2005-11-01 00:00:00

  • Residue Val237 is critical for the enantioselectivity of Penicillium expansum lipase.

    abstract::The shape of the hydrophobic tunnel leading to the active site of Penicillium expansum lipase (PEL) was redesigned by single-point mutations, in order to better understand enzyme enantioselectivity towards naproxen. A variant with a valine-to-glycine substitution at residue 237 exhibited almost no enantioselectivity (...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-013-1405-1

    authors: Tang L,Su M,Chi L,Zhang J,Zhang H,Zhu L

    更新日期:2014-03-01 00:00:00

  • Overexpression of a soybean O-acetylserine (thiol) lyase-encoding gene GmOASTL4 in tobacco increases cysteine levels and enhances tolerance to cadmium stress.

    abstract::O-Acetylserine (thiol) lyase (OASTL, EC 2.5.1.47) catalyzes the final step in cysteine biosynthesis. The soybean GmOASTL4 gene was overexpressed in tobacco. Transgenic plants showed markedly increased accumulation of transcripts and higher cysteine content compared with the wild-type. Upon exposure to cadmium stress, ...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-009-0178-z

    authors: Ning H,Zhang C,Yao Y,Yu D

    更新日期:2010-04-01 00:00:00

  • Isolation of an Acremonium sp. from a screening of 52 seawater fungal isolates and preliminary characterization of its growth conditions and nematicidal activity.

    abstract::Fifty-two fungal isolates obtained from seawater were screened for anti-nematode activity. One isolate, an Acremonium sp., exhibited the highest activity against the pinewood nematode, Bursaphelenchus xylophilus. When it was grown at pH 7.0 and 24-26 °C, nematicidal metabolites were produced. These were heat-stable, w...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-012-0967-7

    authors: Meng Q,Shi X,Meng F,Feng X,Sun J

    更新日期:2012-10-01 00:00:00