Complete nucleotide sequences and genome characterization of double-stranded RNA 1 and RNA 2 in the Raphanus sativus-root cv. Yidianhong [corrected].

Abstract:

:Four distinct double-stranded (ds) RNA bands were extracted from leaves of Raphanus sativus-root cv. Yidianhong [corrected] with yellowing at the leaf edge in China. Purified viral particles of 28-30 nm in diameter contained dsRNA segments with the same number and mobility as these extracted directly from radish leaves. The two major dsRNA segments, namely RasR 1 and RasR 2, were 1866 and 1791 bp in length, respectively. Computer analysis predicted that they both contained a single open reading frame (ORF) on their plus-stranded RNA, putatively encoding a RNA dependent RNA polymerase and a capsid protein similar to that encoded by members of the family Partitiviridae. In addition, both RasR 1 and RasR 2 were highly conserved at the 5' untranslated regions (UTR) and had an adenosine-uracil rich stretch at the 3' UTR, with an identical terminal motif (5'-AAAAUAAAACC-3'). Taken together, these results suggest that the two major dsRNA segments constitute the genome of a partitivirus infecting radish.

journal_name

Arch Virol

journal_title

Archives of virology

authors

Chen L,Chen JS,Liu L,Yu X,Yu S,Fu TZ,Liu WH

doi

10.1007/s00705-005-0685-8

keywords:

subject

Has Abstract

pub_date

2006-05-01 00:00:00

pages

849-59

issue

5

eissn

0304-8608

issn

1432-8798

journal_volume

151

pub_type

杂志文章
  • Characterization of the humoral immune response of experimentally infected and vaccinated pigs to swine influenza viral proteins.

    abstract::The value of serologic tests for diagnosis of swine influenza virus (SIV) infection has been diminished by the emergence of new subtypes and by antigenic drift within subtype. The intensive use of vaccination also has complicated interpretation of serology results. Serologic assays are needed that can detect infection...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-005-0615-9

    authors: Kim WI,Wu WH,Janke B,Yoon KJ

    更新日期:2006-01-01 00:00:00

  • Structure and variability of the 3' end of RNA 3 of Beet soil-borne pomovirus--a virus with uncertain pathogenic effects.

    abstract::PCR products representing c. 550 3' terminal bases of Beet soil-borne pomovirus (BSBV) RNA 3 were compared for sources of this virus from all major sugarbeet-growing areas in Germany. In none of these areas conspicious symptoms could be attributed to the presence of BSBV. Single strand conformation polymorphism analys...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s007050070117

    authors: Koenig R,Pleij CW,Büttner G

    更新日期:2000-01-01 00:00:00

  • Restriction fragment pattern analysis of genomes from French isolates of suis herpes virus 1 (Aujeszky's disease virus).

    abstract::Purified DNA from 45 isolates of suis herpes virus 1 (SHV1) collected between 1980 and 1987 from clinical outbreaks of Aujeszky's disease on French farms was compared by restriction fragment pattern (RFP) analysis. The BamHI generated RFPs were found to be distinguishable, confirming RFP analysis as a potential epidem...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01323161

    authors: Jestin A,Blanchard P,Garbar-Chenon A,Vannier P,Nicolas JC

    更新日期:1990-01-01 00:00:00

  • Complete genome sequence of a divergent strain of Japanese yam mosaic virus from China.

    abstract::A novel strain of Japanese yam mosaic virus (JYMV-CN) was identified in a yam plant with foliar mottle symptoms in China. The complete genomic sequence of JYMV-CN was determined. Its genomic sequence of 9701 nucleotides encodes a polyprotein of 3247 amino acids. Its organization is virtually identical to that of two J...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-014-2231-z

    authors: Lan P,Li F,Wang M,Li R

    更新日期:2015-02-01 00:00:00

  • Complete genome sequence analysis of a genetic variant of grapevine virus L from the grapevine cultivar Blanc du Bois.

    abstract::The complete genome sequences of two grapevine virus L (GVL) isolates collected from the wine grape cultivar Blanc du Bois (Vitis spp.: 'Florida D 6-148'×'Cardinal') in Texas were determined. The two genome sequences (excluding the polyA tail) were each 7594 nucleotide long and 99.7% identical to each other, but they ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-020-04682-8

    authors: Alabi OJ,Appel DN,McBride S,Al Rwahnih M,Pontasch FM

    更新日期:2020-08-01 00:00:00

  • Genome activation in alfamo- and ilarviruses.

    abstract::Alfamo- and ilarviruses are characterized by the deficiency of their genomes (three messenger-sense RNAs) to start an infection cycle. The RNAs are in capsids built from a single species of protein of about 24 kD. A few dimers of this coat protein per RNA molecule are sufficient to activate the genome. Since the first...

    journal_title:Archives of virology

    pub_type: 杂志文章,评审

    doi:10.1007/s007050050551

    authors: Jaspars EM

    更新日期:1999-01-01 00:00:00

  • The phylogenetic and recombinational analysis of beak and feather disease virus Taiwan isolates.

    abstract::Beak and feather disease virus (BFDV) is an avian circovirus, and it has a single-stranded DNA genome. It causes a fatal disease in parrots called psittacine beak and feather disease (PBFD). After screening of samples collected from Taiwan using PCR, complete genome sequences of isolates from 21 samples from various s...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-016-2963-z

    authors: Huang SW,Chiang YC,Chin CY,Tang PC,Liu PC,Wang CY

    更新日期:2016-11-01 00:00:00

  • Sequence analysis of minute amounts of viroid RNA using the polymerase chain reaction (PCR). Rapid communication.

    abstract::The amount of viroid RNA required for sequence analysis can be reduced by five to six orders of magnitude when a modified "polymerase chain reaction" (PCR) is used for the amplification of the reversely transcribed, overlapping viroid cDNAs. By applying this procedure it is possible to establish the molecular structur...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01313962

    authors: Puchta H,Sänger HL

    更新日期:1989-01-01 00:00:00

  • Detection of CMV-DNA in peripheral blood leukocytes of liver transplant patients after ganciclovir treatment.

    abstract::Cytomegalovirus (CMV) infections are common after transplantation, but usually successfully treated with antivirals. In this study, the detection of CMV-DNA in peripheral blood leukocytes was monitored and compared with CMVpp65-antigenemia in liver transplant patients receiving ganciclovir treatment. Twenty adult live...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-003-0108-7

    authors: Loginov R,Höckerstedt K,Lautenschlager I

    更新日期:2003-07-01 00:00:00

  • Proteins specified by African swine fever virus. I. Analysis of viral structural proteins and antigenic properties.

    abstract::At least 28 polypeptides have been identified in intracellular virus, with molecular weights ranging from 11,500 to 243,000 daltons. By treatment with Nonidet P-40 and 2-mercaptoethanol it is possible to obtain subviral particles that have lost some proteins and have a density in CsCl of 1.31 g/cm3 which is higher tha...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01314979

    authors: Tabarés E,Marcotegui MA,Fernández M,Sánchez-Botija C

    更新日期:1980-01-01 00:00:00

  • Complete genome sequences of two divergent isolates of strawberry crinkle virus coinfecting a single strawberry plant.

    abstract::Strawberry crinkle disease is one of the major diseases that threatens strawberry production. Although the biological properties of the agent, strawberry crinkle virus (SCV), have been thoroughly investigated, its complete genome sequence has never been published. Existing RT-PCR-based detection relies on a partial se...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-018-3860-4

    authors: Koloniuk I,Fránová J,Sarkisova T,Přibylová J

    更新日期:2018-09-01 00:00:00

  • Structure and expression in E. coli of the gene coding for protein p10 of African swine fever virus.

    abstract::The gene encoding protein p10, a structural protein of African swine fever (ASF) virus, has been mapped, sequenced and expressed in E. coli. Protein p10 was purified from dissociated virus by reverse-phase HPLC, and its NH2-terminal end identified by automated Edman degradation. To map the gene encoding protein p10, a...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01318999

    authors: Muñoz M,Freije JM,Salas ML,Viñuela E,López-Otín C

    更新日期:1993-01-01 00:00:00

  • Identification and characterization of an isolate of apple green crinkle associated virus involved in a severe disease of quince (Cydonia oblonga, Mill.).

    abstract::A quince tree showing severe symptoms of a previously undescribed viral disease occurring in northern Apulia (Italy) was analysed using high-throughput sequencing of small RNA libraries, leading to the identification of a new strain of apple green crinkle associated virus (isolate AGCaV-CYD) showing peculiar traits. R...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-016-3074-6

    authors: Morelli M,Giampetruzzi A,Laghezza L,Catalano L,Savino VN,Saldarelli P

    更新日期:2017-01-01 00:00:00

  • A different mode of entry by dengue-2 neutralisation escape mutant virus.

    abstract::Entry processes were compared between dengue-2 (DEN-2) virus and a DEN-2 neutralisation escape mutant virus in baby hamster kidney (BHK) cells. The mutant virus (mu6B2) was resistant to neutralisation by a monoclonal antibody, MAb 6B2. Infection of BHK cells by the wild-type DEN-2 virus resulted in direct penetration ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s007050050561

    authors: Lim HY,Ng ML

    更新日期:1999-01-01 00:00:00

  • Use of iodinated organic compounds for the density gradient centrifugation of viruses.

    abstract::Use of Urografin and Conray for the equilibrium centrifugation of viruses is described. These pharmaceuticals, which consist of iodinated arylic compounds, reach densities of 1.6 g/cm3 and have low intrinsic viscosities. Poliovirus, Newcastle disease virus, and lymphocytic choriomeningitis virus were centrifuged to eq...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01318245

    authors: Gschwender HH,Rutter G,Popescu M

    更新日期:1975-01-01 00:00:00

  • Complete genome sequence of a novel bromovirus infecting elderberry (Sambucus nigra L.) in the Czech Republic.

    abstract::The genus Bromovirus currently contains six species whose members have relatively narrow host ranges. In the present work, a new bromovirus infecting elderberry (Sambucus nigra L.) is reported. dsRNA was purified and sequenced by next-generation sequencing, and with minimal additional completion by Sanger sequencing, ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-017-3629-1

    authors: Šafářová D,Candresse T,Navrátil M

    更新日期:2018-02-01 00:00:00

  • Molecular characterization of a novel amalgavirus from the entomopathogenic fungus Beauveria bassiana.

    abstract::Beauveria bassiana is a ubiquitous entomopathogen infecting hundreds of insect species. We have determined the genomic organization and the complete nucleotide sequence of a novel virus isolated from the isolate A24 of B. bassiana. Phylogenetic analysis of the polymerase gene reveals that the virus, tentatively named ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-015-2416-0

    authors: Koloniuk I,Hrabáková L,Petrzik K

    更新日期:2015-06-01 00:00:00

  • Inhibition of attachment of virions of Norwalk virus to mammalian cells by soluble histone molecules.

    abstract::Viral infection is usually initiated by the binding of virus particles to specific receptor molecule(s) on the host cell surface. Blocking of this step prevents the following step, penetration into the cell. In the present study, we investigated the virus-cell interactions of virions of Norwalk virus (NV), a major eti...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-003-0143-4

    authors: Tamura M,Natori K,Kobayashi M,Miyamura T,Takeda N

    更新日期:2003-09-01 00:00:00

  • The nucleotide sequence of the coat protein gene and 3' untranslated region of papaya ringspot virus type W (Aust).

    abstract::The nucleotide sequence of the 3' terminal region of the Australian isolate of papaya ringspot virus type W [PRSV-W (Aust)] was determined. An open reading frame (864 bp), encoding the putative coat protein gene, occurs upstream of the putative 3' untranslated region (206 bp) and poly(A) tail. A 23 amino acid sequence...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01317141

    authors: Bateson M,Dale J

    更新日期:1992-01-01 00:00:00

  • Multiple polyadenylated RNA viruses detected in pooled cultivated and wild plant samples.

    abstract::RNA extracted from 120 leaf specimens from 17 plant species was pooled, and polyadenylated RNA species were sequenced together without barcoding in one lane using massively parallel sequencing technology. After analysis, complete or partial genome sequences representing 20 virus isolates of 16 polyadenylated RNA speci...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-011-1166-x

    authors: Wylie SJ,Luo H,Li H,Jones MG

    更新日期:2012-02-01 00:00:00

  • Molecular characterization of a novel reassortant H7N6 subtype avian influenza virus from poultry in Eastern China, in 2016.

    abstract::During the surveillance for avian influenza viruses (AIVs) in live poultry markets in Eastern China, in 2016, a novel reassortant H7N6 AIV was isolated from a chicken. Phylogenetic analysis showed that this strain received its genes from H9N2, H7N9 and H5N6 AIVs infecting poultry in China. This strain showed moderate ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-017-3219-2

    authors: Wu H,Lu R,Peng X,Peng X,Chen B,Cheng L,Wu N

    更新日期:2017-05-01 00:00:00

  • A novel cassava-infecting begomovirus from Madagascar: cassava mosaic Madagascar virus.

    abstract::Cassava mosaic geminiviruses (CMGs) are implicated in cassava mosaic disease (CMD), the main constraint to cassava production in Africa. Here, we report the complete nucleotide sequences of the DNA-A and DNA-B of a newly characterized CMG found infecting cassava in Madagascar, for which we propose the tentative name c...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-012-1399-3

    authors: Harimalala M,Lefeuvre P,De Bruyn A,Tiendrébéogo F,Hoareau M,Villemot J,Ranomenjanahary S,Andrianjaka A,Reynaud B,Lett JM

    更新日期:2012-10-01 00:00:00

  • Resistance to superinfection of Vero cells persistently infected with Junin virus.

    abstract::Two non-virogenic Vero cell lines persistently infected with the arenavirus Junin (JUNV), named V3 and V7, were characterized with respect to their resistance to superinfection with homologous and antigenically related viruses. Both lines were refractory to JUNV multiplication and partially resistant to other arenavir...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-003-0227-1

    authors: Ellenberg P,Edreira M,Scolaro L

    更新日期:2004-03-01 00:00:00

  • Molecular epidemiological investigation of Marek's disease virus from Guangxi, China.

    abstract::The predominant field strains of Marek's disease virus in Guangxi were clearly different from the vaccine strain CVI988/Rispens based on sequencing of the envelope glycoprotein I (gI), glycoprotein E (gE) and oncogenic meq genes. These differences may be partly responsible for the most recent outbreaks in Guangxi. ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-010-0840-8

    authors: Teng LQ,Wei P,Song ZB,He JJ,Cui ZZ

    更新日期:2011-02-01 00:00:00

  • Inhibition of human immunodeficiency virus (HIV) type 1 multiplication by an avian cellular factor.

    abstract::A factor secreted from avian cells infected non productively with a non cytopathogenic mutant of vesicular stomatitis virus (VSV ts 1026) interferes with HIV replication in CEM cells and peripheral blood monocytes (PBL). Production of infectious particles is decreased and many virions lack cores and/or spikes. In CEM ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01317266

    authors: Semmel M,Alileche A,Coulaud D,Aguilar J,Krief P,Jasmin C

    更新日期:1992-01-01 00:00:00

  • Identification of a novel splice acceptor in the HIV-1 genome: independent expression of the cytoplasmic tail of the envelope protein.

    abstract::Multiple splicing sites exist in the RNA genome of the human immunodeficiency virus type 1 (HIV-1). In a screen for subgenomic forms of the HIV-1 genome that could be transferred to fresh cells by virus infection, we identified a novel spliced variant of HIV-1 RNA that uses a hitherto unknown splice acceptor site with...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01718159

    authors: Berkhout B,van Wamel JL

    更新日期:1996-01-01 00:00:00

  • Cloning of the herpes simplex virus type 1 genome as a novel luciferase-tagged infectious bacterial artificial chromosome.

    abstract::Herpes simplex virus type 1 (HSV-1) is a ubiquitous human pathogen of skin and mucous membranes. In the present study, the genome of the HSV-1 F strain was cloned as an infectious bacterial artificial chromosome (BAC) clone without any deletions of the viral genes. Additionally, a firefly luciferase cassette was inser...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-011-1094-9

    authors: Li Y,Wang S,Zhu H,Zheng C

    更新日期:2011-12-01 00:00:00

  • Effect of gene constellation and postreassortment amino acid change on the phenotypic features of H5 influenza virus reassortants.

    abstract::Reassortants between a low-pathogenic avian influenza virus strain A/Duck/Primorie/2621/2001 (H5N2) and a high-yield human influenza virus strain A/Puerto Rico/8/34 (H1N1) were generated, genotyped and analyzed with respect to their yield in embryonated chicken eggs, pathogenicity for mice, and immunogenicity. A reass...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-006-0931-8

    authors: Rudneva IA,Timofeeva TA,Shilov AA,Kochergin-Nikitsky KS,Varich NL,Ilyushina NA,Gambaryan AS,Krylov PS,Kaverin NV

    更新日期:2007-01-01 00:00:00

  • An evolutionary insight into Newcastle disease viruses isolated in Antarctica.

    abstract::The disease caused by Newcastle disease virus (NDV) is a severe threat to the poultry industry worldwide. Recently, NDV has been isolated in the Antarctic region. Detailed studies on the mode of evolution of NDV strains isolated worldwide are relevant for our understanding of the evolutionary history of NDV. For this ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-015-2434-y

    authors: Soñora M,Moreno P,Echeverría N,Fischer S,Comas V,Fajardo A,Cristina J

    更新日期:2015-08-01 00:00:00

  • Involvement of glycoprotein C (gC) in adsorption of herpes simplex virus type 1 (HSV-1) to the cell.

    abstract::Results demonstrating involvement of glycoprotein C (gC) of herpes simplex type 1 virus (HSV-1) in attachment of the virus to the cell are presented. Monoclonal antibodies against gC-1 inhibited adsorption of gC(+)-strains. The gC(-)-mutant, MP, attached to cells but at a reduced rate. Attachment of the MP-mutant was ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01310482

    authors: Svennerholm B,Jeansson S,Vahlne A,Lycke E

    更新日期:1991-01-01 00:00:00