Abstract:
:Cassava mosaic geminiviruses (CMGs) are implicated in cassava mosaic disease (CMD), the main constraint to cassava production in Africa. Here, we report the complete nucleotide sequences of the DNA-A and DNA-B of a newly characterized CMG found infecting cassava in Madagascar, for which we propose the tentative name cassava mosaic Madagascar virus. With the exception of two recombinant regions that resembled a CMG, we determined that the non-recombinant part of the DNA-A component is distantly related to the other CMGs. Whereas the DNA-B component possesses one recombinant region originating from an unidentified virus, the rest of the genome was seen to be closely related to members of the species East African cassava mosaic Zanzibar virus (EACMZV). Phylogenetic analysis based on complete genome sequences demonstrated that DNA-A and DNA-B components are outliers related to the clade of EACMV-like viruses and that DNA-A is related to the monopartite tomato leaf curl begomoviruses described in islands in the south-west Indian Ocean.
journal_name
Arch Viroljournal_title
Archives of virologyauthors
Harimalala M,Lefeuvre P,De Bruyn A,Tiendrébéogo F,Hoareau M,Villemot J,Ranomenjanahary S,Andrianjaka A,Reynaud B,Lett JMdoi
10.1007/s00705-012-1399-3subject
Has Abstractpub_date
2012-10-01 00:00:00pages
2027-30issue
10eissn
0304-8608issn
1432-8798journal_volume
157pub_type
杂志文章abstract::Porcine respiratory coronavirus (PRCV), a spike (S) gene deletion mutant of Transmissible gastroenteritis virus (TGEV), causes mild or subclinical respiratory infections in pigs. The shedding of PRCV/TGEV was studied at different days post-arrival in fecal and nasal swabs from PRCV/TGEV seronegative sentinel pigs intr...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-003-0245-z
更新日期:2004-05-01 00:00:00
abstract::Two contigs with high similarity to partitivirus sequences were identified by de novo assembly of sequences obtained by RNA-Seq from a wild brassicaceous plant, Arabidopsis halleri subsp. gemmifera. Here, we report the complete genome sequence of a putative novel partitivirus. Excluding the poly-A tail, it consists of...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-020-04670-y
更新日期:2020-09-01 00:00:00
abstract::Here, we present the complete genomic sequence of duck enteritis virus (DEV) strain SD, isolated in China in 2012. The virus was virulent in experimentally infected 2-month-old ducks. The DEV SD genome is 160,945 base pairs (bp) in length. The viral genome sequence, when compared to that of strain DEV CSC, which was i...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-020-04594-7
更新日期:2020-07-01 00:00:00
abstract::For selecting the neutralizing monoclonal antibodies (N-MAbs) directed to VP4 of rotavirus strain K8, which has unique VP4 neutralization epitopes, we prepared several reassortant viruses by mixed infection of two different strains K8 (serotype 1) and P (serotype 3) in vitro: three reassortant clones having VP4 of K8 ...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/BF01316751
更新日期:1991-01-01 00:00:00
abstract::JC virus (JCV) strains worldwide can be classified into various genotypes based on DNA sequence variations. To define the domains of the four major JCV genotypes in Asia, we collected urine samples at six unstudied sites: three in southeastern Asia, two in the central highlands and one in central Asia. DNA was extract...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s705-002-8299-4
更新日期:2002-01-01 00:00:00
abstract::Six novel subgenotypes (B7, B8, C6, C8, C9, and D6) within three hepatitis B virus (HBV) genotypes (B-D) were recently identified in Indonesia. To further characterize HBV in this country, 18 HBV-viremic samples obtained from blood donors in Nusa Tenggara, Indonesia, were subjected to phylogenetic analysis of an 1.6-k...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-010-0628-x
更新日期:2010-05-01 00:00:00
abstract::RNA viruses are classified by their genome polarity and replication strategies. Nucleotide composition and codon usage differ among virus groups, for instance positive-sense RNA (+ssRNA) viruses have higher GC-content than the other RNA virus groups. Codon usage of +ssRNA viruses is closer to humans showing significan...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-018-3930-7
更新日期:2018-10-01 00:00:00
abstract::Optimal conditions of radial haemolysis in gel (HIG) with Chikungunya (Chik) and Japanese encephalitis (JE) viruses were developed and compared with those of rubella virus. Sheep erythrocytes were found preferable for HIG with Chik and JE viruses, unlike rubella virus, where goose erythrocytes gave best results. Roost...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/BF01320619
更新日期:1980-01-01 00:00:00
abstract::Hemagglutinating and acetylesterase functions as well as the 124 kDa glycoprotein were present in the highly cell-culture adapted, avirulent bovine coronavirus strain BCV-L9, in the Norden vaccine strain derived from it, and in 5 wild-type, virulent strains that multiplied in HRT-18 cells but were restricted in severa...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/BF01309637
更新日期:1992-01-01 00:00:00
abstract::Conditions for ELISA by using IgG linked with horseradish peroxidase have been developed for the detection of 6 arenaviruses (Machupo, Junin, Tacaribe, Amapari, LCM and Tamiami). This method allows the detection of arenavirus antigens in various materials; organs and blood in affected animals and infected cell culture...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/BF01314603
更新日期:1981-01-01 00:00:00
abstract::Chrysanthemums worldwide suffer from a high incidence of infection with chrysanthemum virus B (CVB), a member of the genus Carlavirus, family Betaflexiviridae. Three major lineages or strains of this virus have been found in India, but none have been characterized beyond the genetic variation they display in their coa...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-011-1190-x
更新日期:2012-03-01 00:00:00
abstract::Attenuated, gene-deletion mutants of pseudorabies virus (PRV) were tested for their ability to establish a reactivatable latent infection in pigs. The viruses (designated A, B, and C) were from each of three vaccines commercially available in the United States. Viruses A and C were similar in that they had genetically...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/BF01310949
更新日期:1991-01-01 00:00:00
abstract::A new member of the genus Nepovirus was isolated from blueberry in Japan. The virus was associated with latent infection of blueberry trees and provisionally named blueberry latent spherical virus (BLSV). BLSV was found to have isometric particles approximately 30 nm in diameter, which were composed of a single coat p...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-011-1177-7
更新日期:2012-02-01 00:00:00
abstract::In 2007, African swine fever virus (ASFV) was introduced into the Transcaucasian countries and Russia. Since then, it has spread alarmingly and reached the European Union. ASFV strains are highly virulent and lead to almost 100% mortality under experimental conditions. However, the possibility of dose-dependent diseas...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-015-2430-2
更新日期:2015-07-01 00:00:00
abstract::Avihepadnaviruses have been documented previously in ducks, herons, geese, storks and cranes. Here, we describe the full genome of a new avihepadnavirus isolated from Psittacula krameri (ring-necked parrot) in Poland. The parrot hepatitis B virus (PHBV) genome (3042 bp) shares <76% sequence identity with other avihepa...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-011-1197-3
更新日期:2012-03-01 00:00:00
abstract::Coxsackievirus B3 (CV-B3) has frequently been associated with aseptic meningitis outbreaks in China. To identify sequence motifs related to aseptic meningitis and to construct an infectious clone, the genome sequence of 08TC170, a representative strain isolated from cerebrospinal fluid (CSF) samples from an outbreak i...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-016-2893-9
更新日期:2016-08-01 00:00:00
abstract::We have studied the pathogenesis of murine cytomegalovirus (MCMV) pneumonitis in immunocompetent ICR mice and in mice treated with cyclophosphamide (CP). Intranasal infection of immunocompetent mice with MCMV resulted in transient and self-limited pulmonary lesions. When mice were given 200 mg/kg of CP one day before ...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/BF01309571
更新日期:1992-01-01 00:00:00
abstract::We detected a novel bovine hepacivirus N (HNV) subtype, IME_BovHep_01, in the serum of cattle in Tengchong, Yunnan, China, by high-throughput sequencing. The complete genome of IME_BovHep_01, was sequenced using an Illumina MiSeq sequencer and found to be 8850 nt in length, encoding one hypothetical protein. BLASTn an...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-020-04611-9
更新日期:2020-06-01 00:00:00
abstract::Seven putative mitoviral genomes, representing four species from three Sclerotinia sclerotiorum isolates, were fully sequenced. The genome lengths ranged from 2438 to 2815 nucleotides. The RNA-dependent RNA polymerase (RdRp) of one genome shared high amino acid (aa) sequence identity (98.5 %) with the previously descr...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-014-2171-7
更新日期:2014-11-01 00:00:00
abstract::Porcine circovirus type 2 (PCV2) is the essential infectious agent causing porcine circovirus-associated disease (PCVD) in pigs and one of the important viruses that severely jeopardize the swine husbandry industry. PCV2 elicits the unfolded protein response (UPR) via activation of the PERK pathway, and its capsid pro...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-019-04185-1
更新日期:2019-05-01 00:00:00
abstract::The Karens, or 'old settlers', migrated from Myanmar to Andaman and Nicobar islands 80 years ago. A high HBV exposure rate among them has been reported. A study of 34 HBsAg carriers was done to investigate the origin of HBV infection among the Karens. RFLP-based genotyping was confirmed by sequencing and phylogenetic ...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-006-0910-0
更新日期:2007-01-01 00:00:00
abstract::This study examines viral protein and DNA synthesis in Spodoptera frugiperda multicapsid nuclear polyhedrosis virus (SfMNPV) infections of S. frugiperda and Trichoplusia ni cells. A total of 28 infected cell specific polypeptides (ICSPs) were detected in the productive S. frugiperda cells. Of these, 14 were identified...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/BF01310626
更新日期:1990-01-01 00:00:00
abstract::This is the first report on the morphology and fine structure of chlorella virus Göttingen-1 (CVG-1), an European member of the newly approved family Phycodnaviridae, which infects certain unicellular, eukaryotic, exsymbiotic, green algae. CVG-1 are polyhedral particles 145-160 nm in diameter. The capsid consists of t...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/BF01319003
更新日期:1993-01-01 00:00:00
abstract::In 1991 and 1992, H1N2 influenza A viruses were isolated from the lungs of pigs with overt signs of respiratory disease at farms in the Chiba and Kanagawa prefectures of Japan. To determine the genetic origin of these isolates, we phylogenetically analyzed partial nucleotide sequences of their genes. The results indic...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s007050050415
更新日期:1998-01-01 00:00:00
abstract::Acute diarrhea outbreaks caused by porcine epidemic diarrhea virus (PEDV) have been observed in various pig-breeding provinces of China since December 2010. Endemic strains of PEDV were isolated from different areas, and the complete genome sequences of 10 isolates were determined. Our objective in this study was to g...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-013-1767-7
更新日期:2013-12-01 00:00:00
abstract::During aetiological study of diseased red clover (Trifolium pratense L.) using high throughput sequencing, a novel virus with a 10 kb genome divided into two segments was discovered. The virus, tentatively named red clover associated varicosavirus (RCaVV), is phylogenetically related to classifiable members of the gen...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-018-3838-2
更新日期:2018-08-01 00:00:00
abstract::The complete genomic sequence of Cassava Ivorian bacilliform virus (CIBV) is described. The virus has a genomic organization similar to that of pelargonium zonate spot virus (PZSV), the type member of the genus Anulavirus, but it is most closely related to a second, recently described, anulavirus, Amazon lily mild mot...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-014-2086-3
更新日期:2014-10-01 00:00:00
abstract::Dengue and chikungunya viruses co-circulate and cause infections that start with similar symptoms but progress to radically different outcomes. Therefore, an early diagnostic test that can differentiate between the two is needed. A single-step multiplex real-time RT-PCR assay was developed that can simultaneously dete...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-014-2217-x
更新日期:2015-01-01 00:00:00
abstract::This study was done to understand the dynamics of rotavirus genotype distribution in Turkish children. Samples were collected from January 2006 through August 2011 from children at a hospital in Ankara. Rotavirus was detected in 28 % (241/889) of the samples. Genotype G9P[8] was predominant (28 %), followed by G1P[8] ...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-016-2986-5
更新日期:2016-10-01 00:00:00
abstract::Mentha x gracilis 'Variegata', an ornamental mint clone first described about 200 years ago, exhibits virus-like vein banding symptoms. Double-stranded RNA and virion isolations revealed the presence of three viruses in a 'Variegata' plant. Cloning and sequencing disclosed that one of the viruses was a previously unid...
journal_title:Archives of virology
pub_type: 杂志文章
doi:10.1007/s00705-005-0586-x
更新日期:2006-01-01 00:00:00