Genomic sequence analysis of four new chrysanthemum virus B isolates: evidence of RNA recombination.

Abstract:

:Chrysanthemums worldwide suffer from a high incidence of infection with chrysanthemum virus B (CVB), a member of the genus Carlavirus, family Betaflexiviridae. Three major lineages or strains of this virus have been found in India, but none have been characterized beyond the genetic variation they display in their coat protein genes. Here, we describe the analysis of four near-complete genome sequences (from the three lineages) representing the genetic diversity of these strains. Ranging in size from 8815 to 8855 nucleotides (excluding the polyA tail), these four isolates have a genome organization very similar to that of the recently reported Japanese isolate of CVB, with which they share between 70 and 73% genome-wide sequence identity. We present further evidence that recombination may feature quite prominently in the evolution of CVB.

journal_name

Arch Virol

journal_title

Archives of virology

authors

Singh L,Hallan V,Martin DP,Ram R,Zaidi AA

doi

10.1007/s00705-011-1190-x

subject

Has Abstract

pub_date

2012-03-01 00:00:00

pages

531-7

issue

3

eissn

0304-8608

issn

1432-8798

journal_volume

157

pub_type

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