Characterisation of a potyvirus and a potexvirus from Chinese scallion.


:Molecular analyses of viruses infecting Chinese scallion (Allium chinense G. Don) showed that the plants did not contain any of the poty-, carla- or allexiviruses that are common in garlic plants in China. The complete sequences of a potyvirus and a potexvirus were determined and these were shown to represent different viruses from any in the databases. They could be transmitted mechanically to scallion but not to other Allium species (including garlic) or to Narcissus. The potyvirus, tentatively named Scallion mosaic virus, has a distant relationship (c. 62% nucleotide identity over the entire genome) to Turnip mosaic virus and Japanese yam mosaic virus, with which it grouped in phylogenetic analyses. Its genome is 9324 nts long, encoding a 341.3 kDa polyprotein of 3001 amino acids. The potexvirus, tentatively named Scallion virus X, has a genome 6987 nts long and its organisation was similar to that of the other potexviruses but with only 46.3-63.2% nucleotides identical to them. It is most closely related to Narcissus mosaic virus but phylogenetic analyses indicate that it should be considered a distinct species. Neither of the viruses have been detected in garlic, although the two host plants are closely related.


Arch Virol


Archives of virology


Che J,Zheng HY,Chen JP,Adams MJ





Has Abstract


2002-04-01 00:00:00












  • Taxonomy of the order Bunyavirales: update 2019.

    abstract::In February 2019, following the annual taxon ratification vote, the order Bunyavirales was amended by creation of two new families, four new subfamilies, 11 new genera and 77 new species, merging of two species, and deletion of one species. This article presents the updated taxonomy of the order Bunyavirales now accep...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Abudurexiti A,Adkins S,Alioto D,Alkhovsky SV,Avšič-Županc T,Ballinger MJ,Bente DA,Beer M,Bergeron É,Blair CD,Briese T,Buchmeier MJ,Burt FJ,Calisher CH,Cháng C,Charrel RN,Choi IR,Clegg JCS,de la Torre JC,de Lamballer

    更新日期:2019-07-01 00:00:00

  • Characterisation of Banana streak Mysore virus and evidence that its DNA is integrated in the B genome of cultivated Musa.

    abstract::We have sequenced the complete genome of an isolate of Banana streak virus from banana cv. 'Mysore' and show that it is sufficiently different from a previously characterised isolate from cv. 'Obino l'Ewai' to warrant recognition as a distinct species, for which the name Banana streak Mysore virus (BSMysV) is proposed...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Geering AD,Pooggin MM,Olszewski NE,Lockhart BE,Thomas JE

    更新日期:2005-04-01 00:00:00

  • Inactivation and morphological changes of avian influenza virus by copper ions.

    abstract::The infectivity of the H9N2 virus to MDCK cells was time-dependently inhibited by Cu(2+) at concentrations of 2.5-250 microM. In 25 microM Cu(2+) solution, the virus titer decreased by approximately 3 and 4 log within 3 and 6 h, respectively. Compared to Cu(2+), Zn(2+) was much less effective in virus inactivation. Th...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Horie M,Ogawa H,Yoshida Y,Yamada K,Hara A,Ozawa K,Matsuda S,Mizota C,Tani M,Yamamoto Y,Yamada M,Nakamura K,Imai K

    更新日期:2008-01-01 00:00:00

  • The porcine paramyxovirus LPM specifically recognizes sialyl (alpha 2,3) lactose-containing structures.

    abstract::The porcine paramyxovirus LPM recognizes alpha, but not beta, anomers of sialic acid containing structures, specifically sialyl (alpha 2,3) lactose. The virus specificity is directed to the sialyl residue and to the C'4 axial OH and the C'6 CH2OH of the galactose present in this structure. ...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Reyes-Leyva J,Hernández-Jáuregui P,Montaño LF,Zenteno E

    更新日期:1993-01-01 00:00:00

  • Pathogenicity and vaccine efficacy of a thymidine kinase gene deleted infectious laryngotracheitis virus expressing the green fluorescent protein gene.

    abstract::The deletion of the thymidine kinase (TK) gene of herpesviruses causes a reduction in their virulence. However, the effects of the TK gene in infectious laryngotracheitis virus (ILTV) have not been clearly elucidated. In the present study, we constructed a TK gene-deleted recombinant ILTV expressing the green fluoresc...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Han MG,Kweon CH,Mo IP,Kim SJ

    更新日期:2002-05-01 00:00:00

  • The phylogenetic and recombinational analysis of beak and feather disease virus Taiwan isolates.

    abstract::Beak and feather disease virus (BFDV) is an avian circovirus, and it has a single-stranded DNA genome. It causes a fatal disease in parrots called psittacine beak and feather disease (PBFD). After screening of samples collected from Taiwan using PCR, complete genome sequences of isolates from 21 samples from various s...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Huang SW,Chiang YC,Chin CY,Tang PC,Liu PC,Wang CY

    更新日期:2016-11-01 00:00:00

  • Genetic polymorphism across regions of the three open reading frames of "Norwalk-like viruses".

    abstract::Genomic characterization of Norwalk-like human caliciviruses (NLVs) originating from outbreaks and sporadic cases of acute gastroenteritis has revealed surprisingly high levels of diversity, even in the RNA polymerase gene, which is anticipated to be highly conserved. Since information on antigenic relationship is lim...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Vinjé J,Green J,Lewis DC,Gallimore CI,Brown DW,Koopmans MP

    更新日期:2000-01-01 00:00:00

  • The effect of temperature on production and function of bovine interferons.

    abstract::Subnormal temperatures were found to depress the production of interferon by bovid herpesvirus 2 (BHV-2)-infected bovine testicular cells, bovine peripheral blood leukocytes, and bovine monocytes, as well as by BHV-2 antigen-stimulated immune peripheral blood leukocytes. Interferon titers generated at 30 degrees C wer...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Letchworth GJ 3rd,Carmichael LE

    更新日期:1984-01-01 00:00:00

  • Suppressor of RNA silencing encoded by the monopartite tomato leaf curl Java begomovirus.

    abstract::We previously isolated the monopartite begomovirus tomato leaf curl Java virus (ToLCJAV) and satellite DNAbeta02 from the same naturally infected tomato source in Indonesia. ToLCJAV induced mild leaf curl symptoms in Nicotiana benthamiana plants; DNAbeta02 encoded the betaC1 gene and produced severe leaf curl symptoms...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Kon T,Sharma P,Ikegami M

    更新日期:2007-01-01 00:00:00

  • Analysis of the complete genome sequence of euphorbia ringspot virus, an atypical member of the genus Potyvirus.

    abstract::The complete genome sequence of an isolate of euphorbia ringspot virus (EuRSV) was determined by deep sequencing and rapid amplification of cDNA ends (RACE) RT-PCR. It has an RNA genome of 10,154 nucleotides in size, excluding the poly(A) tail, and encodes a polyprotein of 3265 amino acids. Phylogenetic analysis from ...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Knierim D,Menzel W,Winter S

    更新日期:2017-01-01 00:00:00

  • A novel bromodeoxyuridine-resistant wild boar lung cell line facilitates generation of African swine fever virus recombinants.

    abstract::Manipulation of African swine fever virus (ASFV) genomes, in particular those from field strains, is still a challenge. We have shown recently that generation of a green-fluorescent-protein-expressing, thymidine-kinase-negative (TK-) mutant of the low-pathogenic African swine fever virus field strain NHV was supported...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Keil GM,Giesow K,Portugal R

    更新日期:2014-09-01 00:00:00

  • The structure of the Rous sarcoma virus glycoprotein complex: in vitro phenotypic mixing of rous sarcoma virus.

    abstract::Gp 85 the major envelope glycoprotein of Rous sarcoma virus can be released from intact by virus treatment with 2-mercaptoethanol. Attempts were made to reassociate released gp 85 to 2-mercaptoethanol treated virus. In order to study the biological activity and to analyse the reaction product with biochemical methods ...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Pauli G,Friis R

    更新日期:1982-01-01 00:00:00

  • Pathogenicity and phylogenetic evaluation of the variant Newcastle disease viruses termed "pigeon PMV-1 viruses" based on the nucleotide sequence of the fusion protein gene.

    abstract::The nucleotide sequences of the entire F genes of two isolates of the pigeon PMV-1 (PPMV-1) variant of Newcastle disease virus (NDV) were determined using RTPCR. The deduced amino acid sequences of the F0 protein showed four differences between isolate 760/83 which had been passaged 4 times in chickens and gave an int...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Collins MS,Strong I,Alexander DJ

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  • Functional analysis of the heterologous NSP1 genes in the genetic background of simian rotavirus SA11.

    abstract::Function of rotavirus NSP1 was analyzed by using single-NSP1 gene-substitution reassortants, SKF, SDF, and SNF which have the NSP1 gene derived from human rotaviruses KU, DS-1, and canine rotavirus K9, respectively, in the genetic background of simian rotavirus SA11. The NSP1 genes from KU, DS-1, K9, and SA11 exhibite...

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    pub_type: 杂志文章


    authors: Okada J,Kobayashi N,Taniguchi K,Shiomi H

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  • Generation and characterization of the human immunodeficiency virus type 1 mutants.

    abstract::Mutations were introduced by recombinant DNA techniques into 9 genes of an infectious molecular clone of human immunodeficiency virus type 1. The 24 mutants generated were characterized biochemically and biologically by transfection and infection experiments. None of the mutants which have mutations in gag (p17, p24, ...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Adachi A,Ono N,Sakai H,Ogawa K,Shibata R,Kiyomasu T,Masuike H,Ueda S

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  • Complete genomic characterization of milk vetch dwarf virus isolates from cowpea and broad bean in Anhui province, China.

    abstract::Cowpea and broad bean plants showing severe stunting and leaf rolling symptoms were observed in Hefei city, Anhui province, China, in 2014. Symptomatic plants from both species were shown to be infected with milk vetch dwarf virus (MDV) by PCR. The complete genomes of MDV isolates from cowpea and broad bean were seque...

    journal_title:Archives of virology

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    authors: Zhang C,Zheng H,Yan D,Han K,Song X,Liu Y,Zhang D,Chen J,Yan F

    更新日期:2017-08-01 00:00:00

  • Detection of CMV-DNA in peripheral blood leukocytes of liver transplant patients after ganciclovir treatment.

    abstract::Cytomegalovirus (CMV) infections are common after transplantation, but usually successfully treated with antivirals. In this study, the detection of CMV-DNA in peripheral blood leukocytes was monitored and compared with CMVpp65-antigenemia in liver transplant patients receiving ganciclovir treatment. Twenty adult live...

    journal_title:Archives of virology

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    authors: Loginov R,Höckerstedt K,Lautenschlager I

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  • Complete genome sequence of a divergent strain of Japanese yam mosaic virus from China.

    abstract::A novel strain of Japanese yam mosaic virus (JYMV-CN) was identified in a yam plant with foliar mottle symptoms in China. The complete genomic sequence of JYMV-CN was determined. Its genomic sequence of 9701 nucleotides encodes a polyprotein of 3247 amino acids. Its organization is virtually identical to that of two J...

    journal_title:Archives of virology

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    authors: Lan P,Li F,Wang M,Li R

    更新日期:2015-02-01 00:00:00

  • Isolation and serological characterization of influenza A viruses from birds that were dead on arrival at Tokyo airport.

    abstract::Twenty-two strains of influenza A virus isolated from caged birds which had been imported into Japan from India and Thailand and had died druing transportation to Tokyo. Serological tests divided these strains into two groups. Viruses in the first group contained Hav7 hemagglutinin and were related antigenically to A/...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Nerome K,Nakayama M,Ishida M,Fukumi H,Butterfield WK,Webster RG,Campbell CH

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  • Multiple polyadenylated RNA viruses detected in pooled cultivated and wild plant samples.

    abstract::RNA extracted from 120 leaf specimens from 17 plant species was pooled, and polyadenylated RNA species were sequenced together without barcoding in one lane using massively parallel sequencing technology. After analysis, complete or partial genome sequences representing 20 virus isolates of 16 polyadenylated RNA speci...

    journal_title:Archives of virology

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    authors: Wylie SJ,Luo H,Li H,Jones MG

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  • Monoclonal antibodies with neutralizing activity segregate isolates of bovine viral diarrhea virus into groups. Brief report.

    abstract::Isolates of bovine viral diarrhea (BVD) virus were differentiated by monoclonal antibodies (MoAbs) reactive with the 56 kD viral polypeptide. Patterns of neutralizing activity of the MoAbs indicate that multiple epitopes are involved in virus neutralization. ...

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    pub_type: 杂志文章


    authors: Bolin S,Moennig V,Kelso Gourley NE,Ridpath J

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  • Characterization and identification of Oya virus, a Simbu serogroup virus of the genus Bunyavirus, isolated from a pig suspected of Nipah virus infection.

    abstract::A virus, named Oya virus, was isolated in Vero cell cultures from the lungs of a pig suspected of Nipah virus infection. The virus was revealed as a spherical enveloped RNA virus with a diameter of 79 nm. For identification of Oya virus, RT-PCR was performed. A common primer set for S-RNA of the Simbu serogroup of the...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Kono Y,Yusnita Y,Mohd Ali AR,Maizan M,Sharifah SH,Fauzia O,Kubo M,Aziz AJ

    更新日期:2002-08-01 00:00:00

  • The first complete genome sequence of narcissus latent virus from Narcissus.

    abstract::The complete sequence of a narcissus virus isolated from the Netherlands (Narv-NL) was determined to be 8172 nucleotides in length with an open reading frame encoding for 2624 amino acids. Phylogenetic analysis indicates that Narv-NL is clustered with high confidence among representative members from the genus Maclura...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Gao F,Shen J,Liao F,Cai W,Lin S,Yang H,Chen S

    更新日期:2018-05-01 00:00:00

  • Cloning and nucleotide sequencing of the S4 genome segment of avian reovirus S1133.

    abstract::The sequence of RNA genome segment S4 of the avian reovirus (ARV) strain S1133 was determined. S4 RNA is 1185 base pairs long and contains one open reading frame encoding a protein of 367 amino acid residues (40.6 kDa), the similar size as the known S4 gene product (sigma NS), with a net charge of -1 at neutral pH. Th...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Chiu CJ,Lee LH

    更新日期:1997-01-01 00:00:00

  • Pathogenic properties of encephalomyocarditis virus isolates in swine fetuses.

    abstract::The pathogenicity of 5 different encephalomyocarditis (EMC) virus isolates was investigated in swine fetuses following injection of each virus in utero. Laparotomies were performed on 3 pregnant sows in early mid-third (39-40 days) of gestation and on 5 sows in the late mid-third (70-72 days) of gestation, and groups ...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Kim HS,Christianson WT,Joo HS

    更新日期:1989-01-01 00:00:00

  • A New York isolate of Soil-borne wheat mosaic virus differs considerably from the Nebraska type strain in the nucleotide sequences of various coding regions but not in the deduced amino acid sequences.

    abstract::A wheat-infecting furovirus found in Tompkins County, New York, U.S.A. was identified as a strain of Soil-borne wheat mosaic virus (SBWMV) by means of sequence analyses of portions of its RNA 1 and 2. The nucleotide sequences of several of its genes differed by c. 9 to 12% from those of the corresponding genome region...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Koenig R,Bergstrom GC,Gray SM,Loss S

    更新日期:2002-03-01 00:00:00

  • Isolation of avian influenza viruses from two different transhemispheric migratory shorebird species in Australia.

    abstract::Shorebirds on their southerly migration from Siberia to Australia, may pass through Asian regions currently experiencing outbreaks of highly pathogenic H5N1 influenza. To test for the presence of avian influenza viruses in migratory shorebirds arriving in Australia during spring 2004, 173 cloacal swabs were collected ...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Hurt AC,Hansbro PM,Selleck P,Olsen B,Minton C,Hampson AW,Barr IG

    更新日期:2006-11-01 00:00:00

  • Purification of mengovirus by freon extraction and chromatography on protein-coated controlled pore glass.

    abstract::Mengovirus, extracted from infected L-cell cultures with Freon 113 and concentrated from the aqueous phase with polyethyleneglycol, was chromatographed on protein-coated controlled pore glass (CPG). The covalent binding of protein to CPG is described. Further purification and concentration of mengovirus was achieved b...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Gschwender HH,Traub P

    更新日期:1978-01-01 00:00:00

  • Intratype variants of the E2 protein from human papillomavirus type 18 induce different gene expression profiles associated with apoptosis and cell proliferation.

    abstract::Persistent infections with high-risk human papillomaviruses (HR-HPVs) are linked to the development of cervical cancer due to a deregulation of the productive viral cycle in the host cell, leading to cell transformation. The E2 viral protein is expressed early during an HPV infection and regulates viral replication an...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Fuentes-González AM,Muñoz-Bello JO,Manzo-Merino J,Contreras-Paredes A,Pedroza-Torres A,Fernández-Retana J,Pérez-Plasencia C,Lizano M

    更新日期:2019-07-01 00:00:00

  • Infected cell specific protein and viral DNA synthesis in productive and abortive infections of Spodoptera frugiperda nuclear polyhedrosis virus.

    abstract::This study examines viral protein and DNA synthesis in Spodoptera frugiperda multicapsid nuclear polyhedrosis virus (SfMNPV) infections of S. frugiperda and Trichoplusia ni cells. A total of 28 infected cell specific polypeptides (ICSPs) were detected in the productive S. frugiperda cells. Of these, 14 were identified...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Liu HS,Bilimoria SL

    更新日期:1990-01-01 00:00:00