Genetic properties of endemic Chinese porcine epidemic diarrhea virus strains isolated since 2010.

Abstract:

:Acute diarrhea outbreaks caused by porcine epidemic diarrhea virus (PEDV) have been observed in various pig-breeding provinces of China since December 2010. Endemic strains of PEDV were isolated from different areas, and the complete genome sequences of 10 isolates were determined. Our objective in this study was to genetically characterize current Chinese field isolates of PEDV to better understand their epidemiology and genetic diversity. Sequence analysis showed that 10 post-2010 isolates shared high homology with each other and were always clustered together with the virulent DR13 strains (South Korea) and/or one earlier Chinese strain, CH-S, in phylogenetic analysis. All post-2010 isolates possessed common sequence changes in each gene. Our results suggest that current Chinese PEDV isolates originated from either South Korean and/or Chinese ancestors that underwent some genetic variation, thereby forming a new PEDV genotype in China.

journal_name

Arch Virol

journal_title

Archives of virology

authors

Wang XM,Niu BB,Yan H,Gao DS,Yang X,Chen L,Chang HT,Zhao J,Wang CQ

doi

10.1007/s00705-013-1767-7

subject

Has Abstract

pub_date

2013-12-01 00:00:00

pages

2487-94

issue

12

eissn

0304-8608

issn

1432-8798

journal_volume

158

pub_type

杂志文章
  • Novel positive-sense single-stranded RNA virus related to alphavirus-like viruses from Fusarium graminearum.

    abstract::A putative novel positive-sense (+) RNA virus was detected in isolate CF16158 of the fungus Fusarium graminearum, the causal agent of Fusarium head blight and crown rot in wheat in China. The full genome of this virus was sequenced and characterized. The complete cDNA sequence is 7,051 nt long and contains four open r...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-019-04486-5

    authors: Zhang X,Zhang H,Ma D,Chen H,Li W

    更新日期:2020-02-01 00:00:00

  • Molecular diagnosis of occult hepatitis C virus infection in Iranian injection drug users.

    abstract::Occult HCV infection (OCI) has been described as the presence of hepatitis C virus (HCV) genomic RNA in hepatocytes and/or peripheral blood mononuclear cell (PBMC) specimens and the lack of HCV genomic RNA and anti-HCV antibodies (Abs) in plasma samples. Injection drug users (IDUs) are the most important high-risk gro...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-018-4066-5

    authors: Sheikh M,Bokharaei-Salim F,Monavari SH,Ataei-Pirkooh A,Esghaei M,Moradi N,Babaei R,Fakhim A,Keyvani H

    更新日期:2019-02-01 00:00:00

  • Protected endogenous retroviral sequences copurify with infectivity in experimental Creutzfeldt-Jakob disease.

    abstract::Scrapie and Creutzfeldt-Jakob disease (CJD) are caused by infectious agents that are defined phenomenologically. No agent-specific molecules or particles have been identified. Biological properties, such as exponential agent replication and strain variation, as well as physical characteristics of infectivity indicate ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01309662

    authors: Akowitz A,Manuelidis EE,Manuelidis L

    更新日期:1993-01-01 00:00:00

  • DNA vaccination induces a long-term antibody response and protective immunity against pseudorabies virus in mice.

    abstract::In order to investigate the mechanism of long-term immunity and the effect of protective immunity induced by DNA vaccination, we constructed the expression plasmid containing a pseudorabies virus (PRV) gD gene encoding an envelope glycoprotein. Intramuscular vaccination of mice with the plasmid DNA induced a strong an...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s007050050272

    authors: Ho TY,Hsiang CY,Hsiang CH,Chang TJ

    更新日期:1998-01-01 00:00:00

  • Molecular epidemiology of TTV-like mini virus in Norway.

    abstract::TT virus (TTV), the first human circovirus to be discovered, appears to be present in most people; less is known about the prevalence of the related TTV-like mini virus (TLMV). A sensitive nested PCR, specific for TLMV, detected the virus in 48% of 201 sera (Norwegian blood donors) previously found to have a 90% preva...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s705-002-8310-6

    authors: Moen EM,Huang L,Grinde B

    更新日期:2002-01-01 00:00:00

  • Molecular characterization of yam virus X, a new potexvirus infecting yams (Dioscorea spp) and evidence for the existence of at least three distinct potexviruses infecting yams.

    abstract::The genome of yam virus X (YVX), a new member of the genus Potexvirus from yam (Dioscorea trifida), was completely sequenced. Structural and phylogenetic analysis showed that the closest relative of YVX is nerine virus X. A prevalence study found YVX only in plants maintained in Guadeloupe and showed that it also infe...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-014-2211-3

    authors: Mambole IA,Bonheur L,Dumas LS,Filloux D,Gomez RM,Faure C,Lange D,Anzala F,Pavis C,Marais A,Roumagnac P,Candresse T,Teycheney PY

    更新日期:2014-12-01 00:00:00

  • Rescue of a bovine respiratory syncytial virus genomic RNA analog by bovine, human and ovine respiratory syncytial viruses confirms the "functional integrity" and "cross-recognition" of BRSV cis-acting elements by HRSV and ORSV.

    abstract::The nucleotide sequences of the 3' leader and 5' trailer regions were determined for genomic RNA of bovine respiratory syncytial virus (BRSV) strain A-51908. The leader and trailer sequences are '45' and '161' nucleotides in length, respectively. The functionality of BRSV leader and trailer sequences and their recogni...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s007050050719

    authors: Yunus AS,Krishnamurthy S,Pastey MK,Huang Z,Khattar SK,Collins PL,Samal SK

    更新日期:1999-01-01 00:00:00

  • Characterization of rotavirus subgroup-specific monoclonal antibodies and use in single-sandwich ELISA systems for rapid subgrouping of human strains.

    abstract::Two subgroup-specific monoclonal antibodies (MAb) raised in mice against group A human rotavirus were shown to react by immunoblotting with the trimeric form of VP6 of the homologous subgroup and successfully applied to development of new single-sandwich ELISA systems for rapid subgrouping of human strains. All of the...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01317927

    authors: Gerna G,Sarasini A,Torsellini M,di Matteo A,Baldanti F,Parea M,Battaglia M

    更新日期:1989-01-01 00:00:00

  • Differentiation of vaccine strains and field isolates of pseudorabies (Aujeszky's disease) virus: thermal sensitivity and rabbit virulence markers.

    abstract::Eleven cloned North American pseudorabies virus (PRV) strains and the European vaccine strains K and BUK were characterized by their thermal sensitivity and rabbit virulence markers. Heat sensitivity of the strains and isolates ranged from the highly heat resistant strain K, to the extremely heat labile strain BUK and...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01318093

    authors: Platt KB,Maré CJ,Hinz PN

    更新日期:1979-01-01 00:00:00

  • Widespread geographical disparities in chronic hepatitis B virus infection in Algeria.

    abstract::Algeria is the largest country of Africa, with a population of 40 million inhabitants living in disparate environments from the Sahara to the large cities of the Mediterranean coast. The molecular epidemiology of hepatitis B virus (HBV) variants has been partially described, but variations in the seroprevalence of HBV...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-017-3284-6

    authors: Bensalem A,Selmani K,Narjes H,Bencherifa N,Soltani M,Mostefaoui F,Kerioui C,Pineau P,Berkane S,Debzi N

    更新日期:2017-06-01 00:00:00

  • Can HCV affect the efficacy of anti-HIV treatment?

    abstract::To evaluate the impact of new antiretroviral combinations (HAART: Highly Active Anti Retroviral Therapy) on HCV replication and liver enzyme levels, we analysed the changes in HCV viremia and aminotransferase levels in HIV and HCV co-infected patients. Moreover, to evaluate the influence of HCV infection on the effica...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s007050050685

    authors: Filippini P,Coppola N,Scolastico C,Liorre G,Nocera R,Sagnelli E,Piccinino F

    更新日期:2000-01-01 00:00:00

  • Unchanged high prevalence of antibodies to hepatitis E virus (HEV) and HEV RNA among blood donors with an elevated alanine aminotransferase level in Japan during 1991-2006.

    abstract::Hepatitis E is rare in Japan but is occurring more frequently than previously thought. To investigate whether de novo subclinical infection of hepatitis E virus (HEV) has recently increased in Japan, HEV RNA was assayed in serum samples obtained from 4019 Japanese voluntary blood donors with alanine aminotransferase (...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-007-0996-z

    authors: Fukuda S,Ishikawa M,Ochiai N,Suzuki Y,Sunaga J,Shinohara N,Nozawa K,Tsuda F,Takahashi M,Okamoto H

    更新日期:2007-01-01 00:00:00

  • Analysis of some phenotypic traits of feces-borne temperate lambdoid bacteriophages from different immunity groups: a high incidence of cor+, FhuA-dependent phages.

    abstract::A group of previously isolated heterogeneous mEp lambdoid phages (43) from 19 different immunity groups for phage infection was further characterized to gain insight into some phenotypic traits and to assess their relationship with phage lambda. Interestingly, the FhuA host receptor was required by the majority of mEp...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-008-0111-0

    authors: Hernández-Sánchez J,Bautista-Santos A,Fernández L,Bermúdez-Cruz RM,Uc-Mass A,Martínez-Peñafiel E,Martínez MA,García-Mena J,Guarneros G,Kameyama L

    更新日期:2008-01-01 00:00:00

  • Molecular characterization of a distinct begomovirus infecting tobacco in Yunnan, China.

    abstract::Virus isolate Y3V, obtained from tobacco showing leaf curl symptoms in Yunnan, China, had particles with the size and morphology typical of geminiviruses. In reactions with a set of monoclonal antibodies raised against begomoviruses, Y3V was readily differentiated from two previously studied Chinese Begomovirus isolat...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s007050170081

    authors: Zhou XP,Xie Y,Zhang ZK

    更新日期:2001-08-01 00:00:00

  • Detection and subtyping (H5 and H7) of avian type A influenza virus by reverse transcription-PCR and PCR-ELISA.

    abstract::Avian influenza virus infections are a major cause of morbidity and rapid identification of the virus has important clinical, economical and epidemiological implications. We have developed a one-tube Reverse Transcriptase Polymerase Chain Reaction (RT-PCR) for the rapid diagnosis of avian influenza A. A panel of refer...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s007050170193

    authors: Munch M,Nielsen LP,Handberg KJ,Jørgensen PH

    更新日期:2001-01-01 00:00:00

  • Detection and genome characterization of a novel member of the genus Polerovirus from zucchini (Cucurbita pepo) in China.

    abstract::Here, we report a novel member of the genus Polerovirus, zucchini aphid-borne yellows virus (ZABYV), which was identified in zucchini grown for seed production in the Xinjiang Uygur Autonomous Region, China. The complete nucleotide sequence of the ZABYV genome was determined and found to be 5,792 nucleotides in length...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-019-04217-w

    authors: Peng B,Kang B,Wu H,Liu L,Liu L,Fei Z,Hong N,Gu Q

    更新日期:2019-08-01 00:00:00

  • No detection of CD4-independent human immunodeficiency virus 1 envelope glycoproteins in brain tissue of patients with or without neurological complications.

    abstract::Macrophage (mac)-tropic human immnunodeficiency virus type 1 (HIV-1) and simian immnunodeficiency virus (SIV) in brain are associated with neurological disease. Mac-tropic HIV-1 evolves enhanced CD4 interactions that enable macrophage infection via CD4, which is in low abundance. In contrast, mac-tropic SIV is associa...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-018-4094-1

    authors: Quitadamo B,Peters PJ,Koch M,Luzuriaga K,Cheng-Mayer C,Clapham PR,Gonzalez-Perez MP

    更新日期:2019-02-01 00:00:00

  • Characterization of rat brain cellular membrane components acting as receptors for vesicular stomatitis virus. Brief report.

    abstract::The chemical nature of the binding sites for vesicular stomatitis virus (VSV) was studied by measuring the ability of solubilized rat brain cell membranes (SRBM) to compete with cultured cells for viral binding. SRBM significantly reduced both binding and infectivity of VSV. After separation of protein and lipid compo...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01311075

    authors: Conti C,Mastromarino P,Ciuffarella MG,Orsi N

    更新日期:1988-01-01 00:00:00

  • Role of Langerhans cells in the infection of the guinea-pig epidermis with foot-and-mouth disease virus.

    abstract::In guinea-pig infected with foot-and-mouth disease virus (FMDV), Langerhans cells in the foot pads increase in number and show viral antigens 24 hours post-inoculation, preceding appearance of virus in epithelial cells and vesiculation. This observation suggests that Langerhans cells may be engaged in virus transport ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01309929

    authors: di Girolamo W,Salas M,Laguens RP

    更新日期:1985-01-01 00:00:00

  • Electron microscopic studies on equine infectious anemia virus (EIAV). Brief report.

    abstract::Morphological studies of EIAV reveal knobs on the surface of the particles, conically and tubularly shaped cores, budding particles with dense crescents directly underlying the plasma membrane, and distinct intracytoplasmic structures in infected cells. ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01315055

    authors: Weiland F,Matheka HD,Coggins L,Hatner D

    更新日期:1977-01-01 00:00:00

  • Analysis of vaccine-virus-associated rabies cases in red foxes (Vulpes vulpes) after oral rabies vaccination campaigns in Germany and Austria.

    abstract::To eradicate rabies in foxes, almost 97 million oral rabies vaccine baits have been distributed in Germany and Austria since 1983 and 1986, respectively. Since 2007, no terrestrial cases have been reported in either country. The most widely used oral rabies vaccine viruses in these countries were SAD (Street Alabama D...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-009-0408-7

    authors: Müller T,Bätza HJ,Beckert A,Bunzenthal C,Cox JH,Freuling CM,Fooks AR,Frost J,Geue L,Hoeflechner A,Marston D,Neubert A,Neubert L,Revilla-Fernández S,Vanek E,Vos A,Wodak E,Zimmer K,Mettenleiter TC

    更新日期:2009-01-01 00:00:00

  • Maximum likelihood and Bayesian analyses of a combined nucleotide sequence dataset for genetic characterization of a novel pestivirus, SVA/cont-08.

    abstract::Bovine viral diarrhoea virus 1 (BVDV-1) and Bovine viral diarrhoea virus 2 (BVDV-2) are two recognised bovine pestivirus species of the genus Pestivirus. Recently, a pestivirus, termed SVA/cont-08, was detected in a batch of contaminated foetal calf serum originating from South America. Comparative sequence analysis s...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-009-0419-4

    authors: Liu L,Xia H,Baule C,Belák S

    更新日期:2009-01-01 00:00:00

  • Use of Brefeldin A to localize block in intracellular transport of vesicular stomatitis virus G protein on interferon-treated cells.

    abstract::Brefeldin A (BFA) induced a rapid redistribution of vesicular stomatitis virus G protein (VSV-G) to the endoplasmatic reticulum (ER) in interferon (IFN)-pretreated cells. This result is consistent with accumulation of VSV-G in the trans-Golgi (GC) complex in cells pretreated with IFN and implies that IFN does not inte...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01314635

    authors: Polakova K,Russ G

    更新日期:1992-01-01 00:00:00

  • Viral erythrocytic infection in sea bass: virus purification and confirmative diagnosis.

    abstract::The viral erythrocytic infection (VEI) of sea bass (Dicentrarchus labrax) is evidenced by the presence of inclusion bodies in the erythrocytes and erythroblasts. Virus-like particles (VEIV) about 135-150 nm in diameter were observed in erythroblasts of affected fish. No culturable virus could be recovered from the org...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01310951

    authors: Pintó RM,Jofre J,Bosch A

    更新日期:1991-01-01 00:00:00

  • Molecular detection and genetic diversity of norovirus in hospitalized young adults with acute gastroenteritis in Bahia, Brazil.

    abstract::The molecular epidemiology of a recent norovirus (NoV) outbreak in Brazil performed by comparative analysis with Genebank NoV sequences showed that the GII.4 strain was responsible for 72.5% of all NoV-positive cases (58/80). Other detected NoV strains included GII.3 (7/80; 8.8%) and GII.9 (8/80; 10%). This is the fir...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-008-0078-x

    authors: Campos GS,Moreau VH,Bandeira A,Barberino G,Almeida PF,Amador DM,de Lima MO,Sardi SI

    更新日期:2008-01-01 00:00:00

  • Correction to: Complete genome sequence of a novel bacteriophage, PBKP05, infecting Klebsiella pneumoniae.

    abstract::Unfortunately, the original article was published with incorrect accession number and the correct version is updated here. ...

    journal_title:Archives of virology

    pub_type: 杂志文章,已发布勘误

    doi:10.1007/s00705-019-04326-6

    authors: Oh HK,Cha K,Hwang YJ,Cho J,Jo Y,Myung H

    更新日期:2019-09-01 00:00:00

  • Reactivity patterns to human rotavirus strains of a monoclonal antibody against VP2, a component of the inner capsid of rotavirus. Brief report.

    abstract::A non-neutralizing monoclonal antibody (YO-60) against human rotavirus was found to be directed to VP2 (90,000-dalton protein), one of the two major components of the inner capsid. The reactivity patterns of the YO-60 antibody were very similar, though not identical, to those of subgroup II-specific YO-5 monoclonal an...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01310550

    authors: Taniguchi K,Urasawa T,Urasawa S

    更新日期:1986-01-01 00:00:00

  • Hepatitis E virus serology and PCR: does the methodology matter?

    abstract::Hepatitis E virus (HEV) genotype 3 is an emerging pathogen in the developed world. As the clinical manifestations and routine laboratory parameters are often nonspecific, accurate diagnostic tests are crucial. In the current study, the performance of six serological assays and three PCR assays for the detection of HEV...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-017-3395-0

    authors: Cattoir L,Van Hoecke F,Van Maerken T,Nys E,Ryckaert I,De Boulle M,Geerts A,Verhelst X,Colle I,Hutse V,Suin V,Wautier M,Van Gucht S,Van Vlierberghe H,Padalko E

    更新日期:2017-09-01 00:00:00

  • Analysis of BK virus-transformed cells and BK virus-induced tumors by DNA-DNA reassociation kinetics.

    abstract::BK virus (BKV)-transformed cells and BKV-induced tumors as well as in vitro derived tumor cell lines were all found to contain BKV DNA sequences when analysed by DNA-DNA reassociation kinetics. In transformed cells the number of viral genome equivalents per diploid cell genome (CG divided by VG) decreased with increas...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01314838

    authors: Grossi MP,Corallini A,Poli F,Valieri A,Milanesi G,Barbanti-Brodano G

    更新日期:1981-01-01 00:00:00

  • The complete genome sequence of a novel maize-associated totivirus.

    abstract::Deep sequencing of small RNA (sRNA) populations in maize plants from southwest China resulted in the identification of a previously unknown dsRNA virus with a sequence and genome organization resembling that of a totivirus. The complete viral genome is 3,956 nucleotides in length and contains two open reading frames (...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-015-2657-y

    authors: Chen S,Cao L,Huang Q,Qian Y,Zhou X

    更新日期:2016-02-01 00:00:00