Molecular characterization of yam virus X, a new potexvirus infecting yams (Dioscorea spp) and evidence for the existence of at least three distinct potexviruses infecting yams.

Abstract:

:The genome of yam virus X (YVX), a new member of the genus Potexvirus from yam (Dioscorea trifida), was completely sequenced. Structural and phylogenetic analysis showed that the closest relative of YVX is nerine virus X. A prevalence study found YVX only in plants maintained in Guadeloupe and showed that it also infects members of the complex D. cayenensis rotundata. This study provides evidence for the existence of two additional potexviruses, one of which infects D. nummularia in Vanuatu and the other, D. bulbifera and D. rotundata in Haiti and D. trifida and D. rotundata in Guadeloupe. This work also shows that existing potexvirus-specific degenerate primers targeting the ORF1-encoded polymerase domain are well suited for the identification of the three potexviruses reported here.

journal_name

Arch Virol

journal_title

Archives of virology

authors

Mambole IA,Bonheur L,Dumas LS,Filloux D,Gomez RM,Faure C,Lange D,Anzala F,Pavis C,Marais A,Roumagnac P,Candresse T,Teycheney PY

doi

10.1007/s00705-014-2211-3

subject

Has Abstract

pub_date

2014-12-01 00:00:00

pages

3421-6

issue

12

eissn

0304-8608

issn

1432-8798

journal_volume

159

pub_type

杂志文章
  • The complete genome sequence of foot-and-mouth disease virus O/Akesu/58 strain and its some molecular characteristics.

    abstract::The complete genome of O/Akesu/58 strain of foot-and-mouth disease virus (FMDV) was sequenced. The phylogenetic analysis revealed that it is not closely related to epidemic strains or previous strains compared with reference sequences (the identities of complete VP1 nucleotide sequences range from 77.5 to 84.0%). Its ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-007-1041-y

    authors: Li D,Liu ZX,Bao HF,Lu ZJ,Guo JH,Cao YM,Li PH,Bai XW,Chen YL,Xie BX,Cai XP,Xie QG

    更新日期:2007-01-01 00:00:00

  • Complete genome analysis of Pantoea agglomerans-infecting bacteriophage vB_PagM_AAM22.

    abstract::A novel myovirus, vB_PagM_AAM22 (AAM22), was isolated in Lithuania using Pantoea agglomerans as the host for phage propagation. The 49,744-bp genome of AAM22 has a G + C content of 48.4% and contains 96 probable protein-encoding genes and no genes for tRNA. In total, 34 ORFs were given a putative functional annotation...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-020-04705-4

    authors: Truncaitė L,Šimoliūnienė M,Alijošius L,Petrauskaitė E,Kiaušaitė L,Meškys R,Skapas M,Šimoliūnas E

    更新日期:2020-09-01 00:00:00

  • Biological and molecular characterization of Capsicum chlorosis virus infecting chilli and tomato in India.

    abstract::Two isolates of Capsicum chlorosis virus (CaCV, genus Tospovirus) from tomato (CaCV-To-Ind) and chilli (CaCV-Ch-Pan), collected from Haryana and Uttar Pradesh states of northern India respectively, were compared. A comparison of the amino acid sequences of their N genes revealed more than 96% identity, confirming that...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-010-0681-5

    authors: Kunkalikar SR,Sudarsana P,Rajagopalan P,Zehr UB,Ravi KS

    更新日期:2010-07-01 00:00:00

  • Establishment of a feline T-lymphoblastoid cell line highly sensitive for replication of feline immunodeficiency virus.

    abstract::Interleukin-2 dependent feline T-lymphoblastoid cells designated as MYA-1 cells were established. The cells were free from exogenous retroviruses and sensitive for replication of feline immunodeficiency virus (FIV). FIV can grow more efficiently in MYA-1 cells than in feline primary peripheral blood mononuclear cells....

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01313750

    authors: Miyazawa T,Furuya T,Itagaki S,Tohya Y,Takahashi E,Mikami T

    更新日期:1989-01-01 00:00:00

  • Analysis of rubella virus complement-fixing antigens by polyacrylamide gel electrophoresis.

    abstract::The complement fixing antigens of rubella virus have been found to contain virion envelope but little nucleocapsid polypeptides. They are also shown to be associated with two additional polypeptides of host origin. Evidence is presented to suggest that the complement fixing antigens are structural components of the pl...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01315301

    authors: Ho-Terry L,Londesborough P,Cohen A

    更新日期:1986-01-01 00:00:00

  • Regulation of single-strand RNA synthesis of alfalfa mosaic virus in non-transgenic cowpea protoplasts by the viral coat protein.

    abstract::We have compared the RNA synthesis of alfalfa mosaic virus in complete (by RNAs 1, 2 and 3) and incomplete infections (by RNAs 1 and 2) of cowpea protoplasts. Both viral RNA polymerase activity and accumulation of viral RNA were measured. By annealing RNA in solution with 32P-labelled probes of plus and minus polarity...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s007050050305

    authors: Houwing CJ,van de Putte P,Jaspars EM

    更新日期:1998-01-01 00:00:00

  • Grapevine Pinot gris virus seems to have recently been introduced to vineyards in Veneto, Italy.

    abstract::Grapevine Pinot gris virus (GPGV), a member of the genus Trichovirus in the family Betaflexiviridae, was recently discovered in Italy and subsequently in other European countries and in Korea. In this study, we assessed the occurrence of GPGV in 441 samples from Western and Eastern Europe collected over the period 200...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-015-2718-2

    authors: Bertazzon N,Filippin L,Forte V,Angelini E

    更新日期:2016-03-01 00:00:00

  • Complete genome sequences of blueberry red ringspot virus (Caulimoviridae) isolates from the Czech Republic and Slovenia.

    abstract::Genomic DNA of blueberry red ringspot virus (genus Soymovirus, family Caulimoviridae) from highbush blueberry plants growing for years in the Czech Republic and Slovenia was sequenced. The circular dsDNA genomes consist of 8,303 and 8,299 nt, respectively, and contain eight open reading frames (ORFs) longer than 100 a...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-011-1077-x

    authors: Petrzik K,Přibylová J,Pleško IM,Špak J

    更新日期:2011-10-01 00:00:00

  • The role of epithelial cell differentiation in the expression of herpes simplex virus type 1 in normal human oral mucosa in culture.

    abstract::We have examined by immunofluorescent antibody staining technique the expression of herpes simplex virus type 1 (HSV-1) in organ cultures of the normal human oral mucosa. The expression of HSV-1 antigen was found selectively in the epithelial cell layers in relatively undifferentiated states such as basal layer and lo...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01310061

    authors: Yura Y,Iga H,Terashima K,Yoshida H,Yanagawa T,Hayashi Y,Sato M

    更新日期:1987-01-01 00:00:00

  • Cell-free translation of Drosophila C virus RNA: identification of a virus protease activity involved in capsid protein synthesis and further studies on in vitro processing of cricket paralysis virus specified proteins.

    abstract::Drosophila C virus RNA acted as mRNA in rabbit reticulocyte lysates and directed the synthesis of at least one capsid protein and a number of higher molecular weight proteins. Kinetic analysis by pulse-chase experiments showed that a number of high molecular weight products acted as precursors to the capsid protein(s)...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01311694

    authors: Reavy B,Moore NF

    更新日期:1983-01-01 00:00:00

  • Cloning of the herpes simplex virus type 1 genome as a novel luciferase-tagged infectious bacterial artificial chromosome.

    abstract::Herpes simplex virus type 1 (HSV-1) is a ubiquitous human pathogen of skin and mucous membranes. In the present study, the genome of the HSV-1 F strain was cloned as an infectious bacterial artificial chromosome (BAC) clone without any deletions of the viral genes. Additionally, a firefly luciferase cassette was inser...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-011-1094-9

    authors: Li Y,Wang S,Zhu H,Zheng C

    更新日期:2011-12-01 00:00:00

  • Expression of a synthetic rust fungal virus cDNA in yeast.

    abstract::Mycoviruses are viruses that infect fungi. Recently, mycovirus-like RNAs were sequenced from the fungus Phakopsora pachyrhizi, the causal agent of soybean rust. One of the RNAs appeared to represent a novel mycovirus and was designated Phakopsora pachyrhizi virus 2383 (PpV2383). The genome of PpV2383 resembles Sacchar...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-015-2639-0

    authors: Cooper B,Campbell KB,Garrett WM

    更新日期:2016-01-01 00:00:00

  • Complete genome sequence and phylogenetic position of the Bacillus cereus group phage JBP901.

    abstract::Bacteriophage JBP901, isolated from fermented food, is specific for Bacillus cereus group species and exhibits a broad host spectrum among a large number of B. cereus isolates. Genome sequence analysis revealed a linear 159,492-bp genome with overall G+C content of 39.7 mol%, and 201 ORFs. The presence of a putative m...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-015-2485-0

    authors: Asare PT,Ryu S,Kim KP

    更新日期:2015-09-01 00:00:00

  • Phylogenetic tracking of current porcine epidemic diarrhea virus (PEDV) strains in the Philippines.

    abstract::To trace the possible route of introduction of porcine epidemic diarrhea virus (PEDV), the phylogenetic relationships of PEDV strains in the regions of epidemicity in the Philippines to PEDV strains that are endemic in other countries were investigated. Partial nucleotide sequences of the S1 spike gene was determined ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-016-2938-0

    authors: Paraguison-Alili R,Domingo CY

    更新日期:2016-09-01 00:00:00

  • Construction of full-length cDNA clones of lettuce mosaic virus (LMV) and the effects of intron-insertion on their viability in Escherichia coli and on their infectivity to plants.

    abstract::A full length cDNA copy of the genomic RNA of lettuce mosaic virus (LMV) was constructed under the control of an enhanced CaMV 35S promoter and of the NOS terminator. This construct was found infectious when inoculated to lettuce plants. The intron II of the bean nitrite reductase gene was engineered into the LMV FL c...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s007050050474

    authors: Yang SJ,Revers F,Souche S,Lot H,Le Gall O,Candresse T,Dunez J

    更新日期:1998-01-01 00:00:00

  • Biological and molecular characterization of a highly divergent johnsongrass mosaic virus isolate from Pennisetum purpureum.

    abstract::The complete genome sequence (9,865 nucleotides) of a highly divergent johnsongrass mosaic virus isolate (JGMV-CNPGL) was determined using Illumina sequencing. This isolate infected 10 genotypes of gramineous plants including maize. A comparative analysis of the complete genome showed 80 % nucleotide (nt) sequence ide...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-016-2832-9

    authors: Silva KN,Melo FL,Orílio AF,Nagata T,Silva MS,Fernandes CD,Fragoso RR,Dessaune SN,Resende RO

    更新日期:2016-07-01 00:00:00

  • Two distinct nanovirus species infecting faba bean in Morocco.

    abstract::Using monoclonal antibodies raised against a Faba bean necrotic yellows virus (FBNYV) isolate from Egypt and a Faba bean necrotic stunt virus (FBNSV) isolate from Ethiopia, a striking serological variability among nanovirus isolates from faba bean in Morocco was revealed. To obtain a better understanding of this nanov...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-009-0548-9

    authors: Abraham AD,Bencharki B,Torok V,Katul L,Varrelmann M,Josef Vetten H

    更新日期:2010-01-01 00:00:00

  • Influence of double infections on the induction of thymidine kinase by UV-irradiated herpes simplex virus types 1 and 2 and pseudorabies virus.

    abstract::Simultaneous infection of primary rabbit kidney cells with HSV type 1 TK+ and a TK- strain results in a mutual influence of both viruses on the induction of thymidine kinase (TK). TK+ virus has an enhancing and TK- virus a depressing effect on TK induction by a superinfecting TK+ virus. The enzyme induction depends on...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01317531

    authors: Dundaroff S,Just I,Falke D

    更新日期:1975-01-01 00:00:00

  • Transcriptional control of the HERV-H LTR element of the GSDML gene in human tissues and cancer cells.

    abstract::Long terminal repeats (LTRs) of human endogenous retroviruses (HERVs) have been reported to serve as alternative promoters in functional genes. The GSDML (gasdermin-like protein) gene located on human chromosome 17q21 has been found to be an oncogenomic recombination hotspot. Here, we identified the LTR element of HER...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-006-0764-5

    authors: Sin HS,Huh JW,Kim DS,Kang DW,Min DS,Kim TH,Ha HS,Kim HH,Lee SY,Kim HS

    更新日期:2006-10-01 00:00:00

  • The matrix protein of Human respiratory syncytial virus localises to the nucleus of infected cells and inhibits transcription.

    abstract::We studied the kinetics of localisation of matrix (M) protein of Human respiratory syncytial virus (RSV) in infected cells. M protein was detected in the nucleus early in infection, by confocal microscopy and by immunoblotting of nuclear fractions. We next tested the possibility that M protein may be involved in inhib...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-003-0112-y

    authors: Ghildyal R,Baulch-Brown C,Mills J,Meanger J

    更新日期:2003-07-01 00:00:00

  • Genome activation in alfamo- and ilarviruses.

    abstract::Alfamo- and ilarviruses are characterized by the deficiency of their genomes (three messenger-sense RNAs) to start an infection cycle. The RNAs are in capsids built from a single species of protein of about 24 kD. A few dimers of this coat protein per RNA molecule are sufficient to activate the genome. Since the first...

    journal_title:Archives of virology

    pub_type: 杂志文章,评审

    doi:10.1007/s007050050551

    authors: Jaspars EM

    更新日期:1999-01-01 00:00:00

  • Detection and genome sequence of a new betapartitivirus associated with Cucurbitaria piceae Borthw. fungus causing bud blight of spruce in the Czech Republic.

    abstract::A new bisegmented dsRNA virus has been detected in shoots of blue spruce with bud blight disease symptoms and infection by Cucurbitaria piceae (Bortw.) fungus. The virus genome consists of two segments that are 2071 and 2257 nt long, encoding the putative RNA polymerase and capsid protein, respectively. Rosellinia nec...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-015-2692-8

    authors: Petrzik K,Koloniuk I,Sarkisova T,Hrabáková L

    更新日期:2016-05-01 00:00:00

  • The nucleolus--a gateway to viral infection?

    abstract::A number of viruses and viral proteins interact with a dynamic sub-nuclear structure called the nucleolus. The nucleolus is present during interphase in mammalian cells and is the site of ribosome biogenesis, and has been implicated in controlling regulatory processes such as the cell cycle. Viruses interact with the ...

    journal_title:Archives of virology

    pub_type: 杂志文章,评审

    doi:10.1007/s00705-001-0792-0

    authors: Hiscox JA

    更新日期:2002-06-01 00:00:00

  • Inhibition of attachment of virions of Norwalk virus to mammalian cells by soluble histone molecules.

    abstract::Viral infection is usually initiated by the binding of virus particles to specific receptor molecule(s) on the host cell surface. Blocking of this step prevents the following step, penetration into the cell. In the present study, we investigated the virus-cell interactions of virions of Norwalk virus (NV), a major eti...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-003-0143-4

    authors: Tamura M,Natori K,Kobayashi M,Miyamura T,Takeda N

    更新日期:2003-09-01 00:00:00

  • Avian reovirus σA and σNS proteins activate the phosphatidylinositol 3-kinase-dependent Akt signalling pathway.

    abstract::The present study was conducted to identify avian reovirus (ARV) proteins that can activate the phosphatidylinositol 3-kinase (PI3K)-dependent Akt pathway. Based on ARV protein amino acid sequence analysis, σA, σNS, μA, μB and μNS were identified as putative proteins capable of mediating PI3K/Akt pathway activation. T...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-016-2908-6

    authors: Xie L,Xie Z,Huang L,Fan Q,Luo S,Huang J,Deng X,Xie Z,Zeng T,Zhang Y,Wang S

    更新日期:2016-08-01 00:00:00

  • Alphasatellitidae: a new family with two subfamilies for the classification of geminivirus- and nanovirus-associated alphasatellites.

    abstract::Nanoviruses and geminiviruses are circular, single stranded DNA viruses that infect many plant species around the world. Nanoviruses and certain geminiviruses that belong to the Begomovirus and Mastrevirus genera are associated with additional circular, single stranded DNA molecules (~ 1-1.4 kb) that encode a replicat...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-018-3854-2

    authors: Briddon RW,Martin DP,Roumagnac P,Navas-Castillo J,Fiallo-Olivé E,Moriones E,Lett JM,Zerbini FM,Varsani A

    更新日期:2018-09-01 00:00:00

  • Identification of a novel splice acceptor in the HIV-1 genome: independent expression of the cytoplasmic tail of the envelope protein.

    abstract::Multiple splicing sites exist in the RNA genome of the human immunodeficiency virus type 1 (HIV-1). In a screen for subgenomic forms of the HIV-1 genome that could be transferred to fresh cells by virus infection, we identified a novel spliced variant of HIV-1 RNA that uses a hitherto unknown splice acceptor site with...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01718159

    authors: Berkhout B,van Wamel JL

    更新日期:1996-01-01 00:00:00

  • qPCR assay for the detection of pseudocowpox virus.

    abstract::Pseudocowpox is a zoonosis caused by pseudocowpox virus (PCPV), which mainly affects cows but can be an occupational disease of humans. The aim of the study was to validate a quantitative polymerase chain reaction (qPCR) assay for the detection of PCPV. The assay was able to detect up to 1000 copies of PCPV per µL in ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-020-04872-4

    authors: de Oliveira Lopes GA,Ferreira LR,de Souza Trindade G,Fonseca AA Jr,Dos Reis JKP

    更新日期:2021-01-01 00:00:00

  • Mutation spectra of the surface-protein-coding region of the HBV genome in HBV-vaccinated and non-vaccinated individuals in Hungary.

    abstract::Hepatitis B virus (HBV) infection has a major effect on health care systems, with about one-third of the world's population currently infected with the virus. There is an effective vaccine against HBV, which contains a recombinant "surface antigen" produced in an expression vector. Vaccination has proved to be success...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-008-0206-7

    authors: Szomor KN,Dencs A,Garai E,Rusvai E,Berencsi G,Takács M

    更新日期:2008-01-01 00:00:00

  • Identification of novel Bromus- and Trifolium-associated circular DNA viruses.

    abstract::The genomes of a large number of highly diverse novel circular DNA viruses from a wide range of sources have been characterised in recent years, including circular single-stranded DNA (ssDNA) viruses that share similarities with plant-infecting ssDNA viruses of the family Geminiviridae. Here, we describe six novel cir...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-015-2358-6

    authors: Kraberger S,Farkas K,Bernardo P,Booker C,Argüello-Astorga GR,Mesléard F,Martin DP,Roumagnac P,Varsani A

    更新日期:2015-05-01 00:00:00