Complete genome sequence of a novel partitivirus from a wild brassicaceous plant, Arabidopsis halleri.

Abstract:

:Two contigs with high similarity to partitivirus sequences were identified by de novo assembly of sequences obtained by RNA-Seq from a wild brassicaceous plant, Arabidopsis halleri subsp. gemmifera. Here, we report the complete genome sequence of a putative novel partitivirus. Excluding the poly-A tail, it consists of two RNA genome segments of 1912 and 1769 bp, which are predicted to encode a 585-amino-acid-long putative RNA-dependent RNA polymerase (RdRp) and a 487-amino-acid-long putative capsid protein (CP), respectively. Phylogenetically, this virus belongs to the genus Alphapartitivirus and is most closely related to Raphanus sativus partitivirus 1 from radish. We propose the name "Arabidopsis halleri partitivirus 1" (AhPV1) for this novel virus.

journal_name

Arch Virol

journal_title

Archives of virology

authors

Kamitani M,Okuno T,Kudoh H

doi

10.1007/s00705-020-04670-y

subject

Has Abstract

pub_date

2020-09-01 00:00:00

pages

2091-2094

issue

9

eissn

0304-8608

issn

1432-8798

pii

10.1007/s00705-020-04670-y

journal_volume

165

pub_type

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