Abstract:
:Two contigs with high similarity to partitivirus sequences were identified by de novo assembly of sequences obtained by RNA-Seq from a wild brassicaceous plant, Arabidopsis halleri subsp. gemmifera. Here, we report the complete genome sequence of a putative novel partitivirus. Excluding the poly-A tail, it consists of two RNA genome segments of 1912 and 1769 bp, which are predicted to encode a 585-amino-acid-long putative RNA-dependent RNA polymerase (RdRp) and a 487-amino-acid-long putative capsid protein (CP), respectively. Phylogenetically, this virus belongs to the genus Alphapartitivirus and is most closely related to Raphanus sativus partitivirus 1 from radish. We propose the name "Arabidopsis halleri partitivirus 1" (AhPV1) for this novel virus.
journal_name
Arch Viroljournal_title
Archives of virologyauthors
Kamitani M,Okuno T,Kudoh Hdoi
10.1007/s00705-020-04670-ysubject
Has Abstractpub_date
2020-09-01 00:00:00pages
2091-2094issue
9eissn
0304-8608issn
1432-8798pii
10.1007/s00705-020-04670-yjournal_volume
165pub_type
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