Nucleolytic processing of a protein-bound DNA end by the E. coli SbcCD (MR) complex.

Abstract:

:SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and have been postulated to play roles in removing protein bound to DNA termini. Here we provide direct evidence that the Escherichia coli MR complex (SbcCD) removes protein from a protein-bound DNA end by inserting a double-strand break (DSB). These observations indicate a more complex biochemical action than has been assumed previously and argue that this class of protein has the potential to play a direct role in deprotecting protein-bound DNA ends in vivo.

journal_name

DNA Repair (Amst)

journal_title

DNA repair

authors

Connelly JC,de Leau ES,Leach DR

doi

10.1016/s1568-7864(03)00063-6

keywords:

subject

Has Abstract

pub_date

2003-07-16 00:00:00

pages

795-807

issue

7

eissn

1568-7864

issn

1568-7856

pii

S1568786403000636

journal_volume

2

pub_type

杂志文章
  • The cross-talk between signaling pathways, noncoding RNAs and DNA damage response: Emerging players in cancer progression.

    abstract::The DNA damage response (DDR) pathway's primary purpose is to maintain the genome structure's integrity and stability. A great deal of effort has done to understand the exact molecular mechanisms of non-coding RNAs, such as lncRNA, miRNAs, and circRNAs, in distinct cellular and genomic processes and cancer progression...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2020.103036

    authors: Malakoti F,Alemi F,Younesi S,Majidinia M,Yousefi B,Morovat P,Khelghati N,Maleki M,Karimian A,Asemi Z

    更新日期:2021-01-07 00:00:00

  • DNA mismatch repair mediates protection from mutagenesis induced by short-wave ultraviolet light.

    abstract::To investigate involvement of DNA mismatch repair in the response to short-wave ultraviolet (UVC) light, we compared UVC-induced mutant frequencies and mutational spectra at the Hprt gene between wild type and mismatch-repair-deficient mouse embryonic stem (ES) cells. Whereas mismatch repair gene status did not signif...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2006.06.005

    authors: Borgdorff V,Pauw B,van Hees-Stuivenberg S,de Wind N

    更新日期:2006-11-08 00:00:00

  • Srs2 overexpression reveals a helicase-independent role at replication forks that requires diverse cell functions.

    abstract::Srs2 is a 3'-5' DNA helicase that regulates many aspects of DNA metabolism in Saccharomyces cerevisiae. It is best known for its ability to counteract homologous recombination by dismantling Rad51 filaments, but is also involved in checkpoint activation, adaptation and recovery, and in resolution of late recombination...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2011.02.004

    authors: León Ortiz AM,Reid RJ,Dittmar JC,Rothstein R,Nicolas A

    更新日期:2011-05-05 00:00:00

  • Function of Rad17/Mec3/Ddc1 and its partial complexes in the DNA damage checkpoint.

    abstract::The Saccharomyces cerevisiae heterotrimeric checkpoint clamp consisting of the Rad17, Mec3, and Ddc1 subunits (Rad17/3/1, the 9-1-1 complex in humans) is an early response factor to DNA damage in a signal transduction pathway leading to the activation of the checkpoint system and eventually to cell cycle arrest. These...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2005.07.008

    authors: Majka J,Burgers PM

    更新日期:2005-09-28 00:00:00

  • Defects in recombination activity caused by somatic and germline mutations in the multimerization/BRCA2 binding region of human RAD51 protein.

    abstract::The human RAD51 recombinase possesses DNA pairing and strand exchange activities that are essential for the error-free, homology-directed repair of DNA double-strand breaks. The recombination activities of RAD51 are activated upon its assembly into presynaptic filaments on single-stranded DNA at resected DSB ends. Def...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2017.10.008

    authors: Silva MC,Bryan KE,Morrical MD,Averill AM,Dragon J,Wiegmans AP,Morrical SW

    更新日期:2017-12-01 00:00:00

  • UBE2V2 (MMS2) is not required for effective immunoglobulin gene conversion or DNA damage tolerance in DT40.

    abstract::The RAD6/RAD18 heterodimer promotes translesion synthesis via the monoubiquitination of the DNA sliding clamp, PCNA. In S. cerevisiae, a second complex, UBC13/MMS2/RAD5, can extend this single ubiquitin with a non-canonical lysine 63-linked chain. This polyubiquitination step is required for an error-free mode of bypa...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2004.12.002

    authors: Simpson LJ,Sale JE

    更新日期:2005-04-04 00:00:00

  • Mutational consequences of dNTP pool imbalances in E. coli.

    abstract::The accuracy of DNA synthesis depends on the accuracy of the polymerase as well as the quality and concentration(s) of the available 5'-deoxynucleoside-triphosphate DNA precursors (dNTPs). The relationships between dNTPs and error rates have been studied in vitro, but only limited insights exist into these correlation...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2012.10.011

    authors: Schaaper RM,Mathews CK

    更新日期:2013-01-01 00:00:00

  • A second life in science--working after the age of 65.

    abstract::I was born in January, 1921 and was fortunate in working for a research organization that had no fixed retirement age. I was permitted to continue Science as long as there were some resources to support research that had some relevance to the organization's goals. A number of projects on which I worked were continuati...

    journal_title:DNA repair

    pub_type: 历史文章,杂志文章

    doi:10.1016/j.dnarep.2003.04.002

    authors: Setlow RB

    更新日期:2004-04-01 00:00:00

  • Minding the gap: the underground functions of BRCA1 and BRCA2 at stalled replication forks.

    abstract::The hereditary breast and ovarian cancer predisposition genes, BRCA1 and BRCA2, participate in the repair of DNA double strand breaks by homologous recombination. Circumstantial evidence implicates these genes in recombinational responses to DNA polymerase stalling during the S phase of the cell cycle. These responses...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2007.02.020

    authors: Nagaraju G,Scully R

    更新日期:2007-07-01 00:00:00

  • Claspin, a regulator of Chk1 in DNA replication stress pathway.

    abstract::Regulation of the vertebrate checkpoint kinase Chk1 involves several protein complexes including the recently identified protein Claspin. Claspin associates with Chk1 upon replication stress and DNA damage and is required for Chk1 activation in both Xenopus and human systems. More importantly, Claspin is involved in r...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2004.03.001

    authors: Chini CC,Chen J

    更新日期:2004-08-01 00:00:00

  • The role of the DNA damage response in neuronal development, organization and maintenance.

    abstract::The DNA damage response is a key factor in the maintenance of genome stability. As such, it is a central axis in sustaining cellular homeostasis in a variety of contexts: development, growth, differentiation, and maintenance of the normal life cycle of the cell. It is now clear that diverse mechanisms encompassing cel...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2008.03.005

    authors: Barzilai A,Biton S,Shiloh Y

    更新日期:2008-07-01 00:00:00

  • RecA mediated initial alignment of homologous DNA molecules displays apparent first order kinetics with little effect of heterology.

    abstract::The mechanism and determinants of RecA mediated initial alignment of homologous DNA molecules were studied by performing Monte Carlo simulations of the dynamics of DNA molecules. The simulation procedure was used to assess the effect of heterologous DNA and dilution on the rate of formation and yield of homologous ali...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2003.09.009

    authors: Patel S,Edwards JS

    更新日期:2004-01-05 00:00:00

  • The role of the SWI/SNF chromatin remodelling complex in the response to DNA double strand breaks.

    abstract::Mammalian cells possess multiple closely related SWI/SNF chromatin remodelling complexes. These complexes have been implicated in the cellular response to DNA double strand breaks (DSBs). Evidence suggests that SWI/SNF complexes contribute to successful repair via both the homologous recombination and non-homologous e...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2020.102919

    authors: Harrod A,Lane KA,Downs JA

    更新日期:2020-09-01 00:00:00

  • Kinetic analysis of DNA double-strand break repair pathways in Arabidopsis.

    abstract::Double-strand breaks in genomic DNA (DSB) are potentially lethal lesions which separate parts of chromosome arms from their centromeres. Repair of DSB by recombination can generate mutations and further chromosomal rearrangements, making the regulation of recombination and the choice of recombination pathways of the h...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2011.04.002

    authors: Charbonnel C,Allain E,Gallego ME,White CI

    更新日期:2011-06-10 00:00:00

  • RADAR-seq: A RAre DAmage and Repair sequencing method for detecting DNA damage on a genome-wide scale.

    abstract::RAre DAmage and Repair sequencing (RADAR-seq) is a highly adaptable sequencing method that enables the identification and detection of rare DNA damage events for a wide variety of DNA lesions at single-molecule resolution on a genome-wide scale. In RADAR-seq, DNA lesions are replaced with a patch of modified bases tha...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2019.06.007

    authors: Zatopek KM,Potapov V,Maduzia LL,Alpaslan E,Chen L,Evans TC Jr,Ong JL,Ettwiller LM,Gardner AF

    更新日期:2019-08-01 00:00:00

  • Current role of mammalian sirtuins in DNA repair.

    abstract::Cellular DNA is constantly challenged by damage-inducing factors derived from exogenous or endogenous sources. Thus, to protect against DNA damage, cells have evolved complex and finely regulated mechanisms collectively known as DNA-damage response (DDR). However, DNA repair in eukaryotes does not occur merely in nake...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2019.06.009

    authors: Lagunas-Rangel FA

    更新日期:2019-08-01 00:00:00

  • XRCC1 deficiency influences the cytotoxicity and the genomic instability induced by Me-lex, a specific inducer of N3-methyladenine.

    abstract::Me-lex is a sequence-specific alkylating agent synthesized to preferentially (>90%) generate N3-methyladenine (3-mA) in the minor groove of double-strand DNA, in A-T rich regions. In this paper we investigated the effect of XRCC1 deficiency in the processing of 3-mA adducts generated by Me-lex, through the molecular a...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2010.03.016

    authors: Russo D,Fronza G,Ottaggio L,Monti P,Perfumo C,Inga A,Iyer P,Gold B,Menichini P

    更新日期:2010-07-01 00:00:00

  • One ring to bring them all--the role of Ku in mammalian non-homologous end joining.

    abstract::The repair of DNA double strand breaks is essential for cell survival and several conserved pathways have evolved to ensure their rapid and efficient repair. The non-homologous end joining pathway is initiated when Ku binds to the DNA break site. Ku is an abundant nuclear heterodimer of Ku70 and Ku80 with a toroidal s...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2014.02.019

    authors: Grundy GJ,Moulding HA,Caldecott KW,Rulten SL

    更新日期:2014-05-01 00:00:00

  • Ischemic preconditioning induces XRCC1, DNA polymerase-beta, and DNA ligase III and correlates with enhanced base excision repair.

    abstract::Neuronal protection induced by ischemic preconditioning has an important role in the reduction of stroke volume and attenuation of neuronal cell death. Ischemic injury is associated with increased oxidative DNA damage, and failure to efficiently repair these oxidatively damaged lesions results in the accumulation of m...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2007.02.027

    authors: Li N,Wu H,Yang S,Chen D

    更新日期:2007-09-01 00:00:00

  • MGMT inhibitors--The Trinity College-Paterson Institute experience, a chemist's perception.

    abstract::The DNA repair protein, O(6)-alkylguanine-DNA alkyltransferase (MGMT) can confer resistance to the cancer chemotherapeutic effects of the class of DNA damaging drugs generally referred to as the O(6)-alkylating agents. Inactivation of MGMT is thus a practical approach to improving the efficacy of such agents. An accou...

    journal_title:DNA repair

    pub_type: 历史文章,杂志文章

    doi:10.1016/j.dnarep.2007.03.015

    authors: McMurry TB

    更新日期:2007-08-01 00:00:00

  • In vitro chromatin templates to study nucleotide excision repair.

    abstract::In eukaryotic cells, DNA associates with histones and exists in the form of a chromatin hierarchy. Thus, it is generally believed that many eukaryotic cellular DNA processing events such as replication, transcription, recombination and DNA repair are influenced by the packaging of DNA into chromatin. This mini-review ...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2015.09.026

    authors: Liu X

    更新日期:2015-12-01 00:00:00

  • Biochemical reconstitution and genetic characterization of the major oxidative damage base excision DNA repair pathway in Thermococcus kodakarensis.

    abstract::Reactive oxygen species drive the oxidation of guanine to 8-oxoguanine (8oxoG), which threatens genome integrity. The repair of 8oxoG is carried out by base excision repair enzymes in Bacteria and Eukarya, however, little is known about archaeal 8oxoG repair. This study identifies a member of the Ogg-subfamily archaea...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2019.102767

    authors: Gehring AM,Zatopek KM,Burkhart BW,Potapov V,Santangelo TJ,Gardner AF

    更新日期:2020-02-01 00:00:00

  • RNA-directed repair of DNA double-strand breaks.

    abstract::DNA double-strand breaks (DSBs) are among the most deleterious DNA lesions, which if unrepaired or repaired incorrectly can cause cell death or genome instability that may lead to cancer. To counteract these adverse consequences, eukaryotes have evolved a highly orchestrated mechanism to repair DSBs, namely DNA-damage...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2015.04.017

    authors: Yang YG,Qi Y

    更新日期:2015-08-01 00:00:00

  • MDC1 is ubiquitylated on its tandem BRCT domain and directly binds RAP80 in a UBC13-dependent manner.

    abstract::The cellular response to DNA damage is essential for maintenance of genomic stability. MDC1 is a key member of the DNA damage response. It is an adaptor protein that binds and recruits proteins to sites of DNA damage, a crucial step for a proper response. MDC1 contains several protein-protein interacting modules, incl...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2011.04.016

    authors: Strauss C,Halevy T,Macarov M,Argaman L,Goldberg M

    更新日期:2011-08-15 00:00:00

  • Extracts of proliferating and non-proliferating human cells display different base excision pathways and repair fidelity.

    abstract::Base excision repair (BER) of damaged or inappropriate bases in DNA has been reported to take place by single nucleotide insertion or through incorporation of several nucleotides, termed short-patch and long-patch repair, respectively. We found that extracts from proliferating and non-proliferating cells both had capa...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2009.04.002

    authors: Akbari M,Peña-Diaz J,Andersen S,Liabakk NB,Otterlei M,Krokan HE

    更新日期:2009-07-04 00:00:00

  • Mutational analysis of Thermococcus kodakarensis Endonuclease III reveals the roles of evolutionarily conserved residues.

    abstract::Endonuclease III (EndoIII) is nearly ubiquitous in all three domains of life. EndoIII family proteins exhibit a bifunctional (glycosylase/lyase) activity on oxidative/saturated pyrimidine bases, such as thymine glycol. Previous studies on EndoIII homologs have reported the presence of important residues involved in su...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2020.102859

    authors: Shiraishi M,Mizutani K,Yamamoto J,Iwai S

    更新日期:2020-06-01 00:00:00

  • Three tandem HRDC domains have synergistic effect on the RecQ functions in Deinococcus radiodurans.

    abstract::The RecQ family of DNA helicases performs essential functions in the maintenance of genomic stability in all organisms. In Deinococcus radiodurans, DR1289 is a special member of RecQ family with unique arrangement of three tandem HRDC domains in the C-terminus. A dr1289 mutant is hypersensitive to gamma-irradiation, U...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2006.09.006

    authors: Huang L,Hua X,Lu H,Gao G,Tian B,Shen B,Hua Y

    更新日期:2007-02-04 00:00:00

  • Mismatch repair protein Msh2 contributes to UVB-induced cell cycle arrest in epidermal and cultured mouse keratinocytes.

    abstract::Nucleotide excision repair (NER), cell cycle regulation and apoptosis are major defence mechanisms against the carcinogenic effects of UVB radiation. NER eliminates UVB-induced DNA photolesions via two subpathways: global genome repair (GGR) and transcription-coupled repair (TCR). In a previous study, we found UVB-ind...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2004.08.008

    authors: van Oosten M,Stout GJ,Backendorf C,Rebel H,de Wind N,Darroudi F,van Kranen HJ,de Gruijl FR,Mullenders LH

    更新日期:2005-01-02 00:00:00

  • Human MutS and FANCM complexes function as redundant DNA damage sensors in the Fanconi Anemia pathway.

    abstract::The Fanconi Anemia (FA) pathway encodes a DNA damage response activated by DNA damage-stalled replication forks. Current evidence suggests that the FA pathway initiates with DNA damage recognition by the FANCM complex (FANCM/FAAP24/MHF). However, genetic inactivation of FANCM in mouse and DT40 cells causes only a part...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2011.09.006

    authors: Huang M,Kennedy R,Ali AM,Moreau LA,Meetei AR,D'Andrea AD,Chen CC

    更新日期:2011-12-10 00:00:00

  • The involvement of non-B DNA structures in gross chromosomal rearrangements.

    abstract::Non-B DNA conformations adopted by certain types of DNA sequences promote genetic instabilities, especially gross rearrangements including translocations. We conclude the following: (a) slipped (hairpin) structures, cruciforms, triplexes, tetraplexes and i-motifs, and left-handed Z-DNA are formed in chromosomes and el...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2006.05.032

    authors: Bacolla A,Wojciechowska M,Kosmider B,Larson JE,Wells RD

    更新日期:2006-09-08 00:00:00