Three tandem HRDC domains have synergistic effect on the RecQ functions in Deinococcus radiodurans.

Abstract:

:The RecQ family of DNA helicases performs essential functions in the maintenance of genomic stability in all organisms. In Deinococcus radiodurans, DR1289 is a special member of RecQ family with unique arrangement of three tandem HRDC domains in the C-terminus. A dr1289 mutant is hypersensitive to gamma-irradiation, UV, H2O2 and mitomycin C. By complementing the dr1289 mutant with various domains of Dr1289 in vivo, we have determined that the helicase and all three HRDC domains are indispensable for complete DNA damage resistance. Using a continuous fluorescent dye-displacement assay, we investigated the optimal conditions for Dr1289 unwinding function at various concentrations of ATP and metal ions to show that the helicase activity is comparable to what observed in Escherichia coli RecQ. We also found that the helicase domain is necessary for the unwinding and ATPase activity and that the three tandem HRDC domains increase the efficiency of these activities. Based on these data, we propose that the C-terminus of Dr1289 has evolved in D. radiodurans to confront the types and amounts of DNA damage.

journal_name

DNA Repair (Amst)

journal_title

DNA repair

authors

Huang L,Hua X,Lu H,Gao G,Tian B,Shen B,Hua Y

doi

10.1016/j.dnarep.2006.09.006

subject

Has Abstract

pub_date

2007-02-04 00:00:00

pages

167-76

issue

2

eissn

1568-7864

issn

1568-7856

pii

S1568-7864(06)00286-2

journal_volume

6

pub_type

杂志文章
  • Interplay of two major repair pathways in the processing of complex double-strand DNA breaks.

    abstract::Radiation-induced complex double-strand breaks (DSBs) characterised by base lesions, abasic sites or single-strand breaks in close proximity to the break termini, are believed to be a major cause of the biological effects of ionising radiation exposure. It has been hypothesised that complex DSBs pose problems for the ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2008.05.001

    authors: Dobbs TA,Palmer P,Maniou Z,Lomax ME,O'Neill P

    更新日期:2008-08-02 00:00:00

  • Structural and functional studies of MutS2 from Deinococcus radiodurans.

    abstract::The MutS2 homologues have been found widespread in most prokaryotes, which are involved in DNA repair and reactive oxygen species detoxification. The C-terminal small mutS-related (Smr) domain is critical for its endonucleolytic activity. However, the detailed catalytic mechanism is still unclear. In this study, we fi...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2014.04.012

    authors: Zhang H,Xu Q,Lu M,Xu X,Wang Y,Wang L,Zhao Y,Hua Y

    更新日期:2014-09-01 00:00:00

  • In vitro chromatin templates to study nucleotide excision repair.

    abstract::In eukaryotic cells, DNA associates with histones and exists in the form of a chromatin hierarchy. Thus, it is generally believed that many eukaryotic cellular DNA processing events such as replication, transcription, recombination and DNA repair are influenced by the packaging of DNA into chromatin. This mini-review ...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2015.09.026

    authors: Liu X

    更新日期:2015-12-01 00:00:00

  • Repair of the mutagenic DNA oxidation product, 5-formyluracil.

    abstract::The oxidation of the thymine methyl group can generate 5-formyluracil (FoU). Template FoU residues are known to miscode, generating base substitution mutations. The repair of the FoU lesion is therefore important in minimizing mutations induced by DNA oxidation. We have studied the repair of FoU in synthetic oligonucl...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/s1568-7864(02)00198-2

    authors: Liu P,Burdzy A,Sowers LC

    更新日期:2003-02-03 00:00:00

  • The role of the DNA damage response in neuronal development, organization and maintenance.

    abstract::The DNA damage response is a key factor in the maintenance of genome stability. As such, it is a central axis in sustaining cellular homeostasis in a variety of contexts: development, growth, differentiation, and maintenance of the normal life cycle of the cell. It is now clear that diverse mechanisms encompassing cel...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2008.03.005

    authors: Barzilai A,Biton S,Shiloh Y

    更新日期:2008-07-01 00:00:00

  • O6-methylguanine-DNA-methyltransferase (MGMT) gene therapy targeting haematopoietic stem cells: studies addressing safety issues.

    abstract::As haematopoietic stem cell gene therapy utilizing O(6)-methylguanine-DNA-methyltransferase has reached the clinical stage, safety-related questions become increasingly important. These issues concern insertional mutagenesis of viral vectors, the acute toxicity of pre-transplant conditioning protocols and in vivo sele...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2007.03.021

    authors: Sorg UR,Kleff V,Fanaei S,Schumann A,Moellmann M,Opalka B,Thomale J,Moritz T

    更新日期:2007-08-01 00:00:00

  • Catalytic mechanism of human DNA polymerase lambda with Mg2+ and Mn2+ from ab initio quantum mechanical/molecular mechanical studies.

    abstract::DNA polymerases play a crucial role in the cell cycle due to their involvement in genome replication and repair. Understanding the reaction mechanism by which these polymerases carry out their function can provide insights into these processes. Recently, the crystal structures of human DNA polymerase lambda (Pollambda...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2008.07.007

    authors: Cisneros GA,Perera L,García-Díaz M,Bebenek K,Kunkel TA,Pedersen LG

    更新日期:2008-11-01 00:00:00

  • Detection of the small oligonucleotide products of nucleotide excision repair in UVB-irradiated human skin.

    abstract::UVB radiation results in the formation of potentially mutagenic photoproducts in the DNA of epidermal skin cells. In vitro approaches have demonstrated that the nucleotide excision repair (NER) machinery removes UV photoproducts from DNA in the form of small (∼30-nt-long), excised, damage-containing DNA oligonucleotid...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2019.102766

    authors: Choi JH,Han S,Kemp MG

    更新日期:2020-02-01 00:00:00

  • High levels of oxidatively generated DNA damage 8,5'-cyclo-2'-deoxyadenosine accumulate in the brain tissues of xeroderma pigmentosum group A gene-knockout mice.

    abstract::Xeroderma pigmentosum (XP) is a genetic disorder associated with defects in nucleotide excision repair, a pathway that eliminates a wide variety of helix-distorting DNA lesions, including ultraviolet-induced pyrimidine dimers. In addition to skin diseases in sun-exposed areas, approximately 25% of XP patients develop ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2019.04.004

    authors: Mori T,Nakane H,Iwamoto T,Krokidis MG,Chatgilialoglu C,Tanaka K,Kaidoh T,Hasegawa M,Sugiura S

    更新日期:2019-08-01 00:00:00

  • Arsenic-induced Mre11 phosphorylation is cell cycle-dependent and defective in NBS cells.

    abstract::Cancer-prone diseases ataxia-telangiectasia (AT), Nijmegen breakage syndrome (NBS) and ataxia-telangiectasia-like disorder (ATLD) are defective in the repair of DNA double-stranded break (DSB). On the other hand, arsenic (As) has been reported to cause DSB and to be involved in the occurrence of skin, lung and bladder...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/s1568-7864(01)00009-x

    authors: Yuan SS,Su JH,Hou MF,Yang FW,Zhao S,Lee EY

    更新日期:2002-02-28 00:00:00

  • Mutational consequences of dNTP pool imbalances in E. coli.

    abstract::The accuracy of DNA synthesis depends on the accuracy of the polymerase as well as the quality and concentration(s) of the available 5'-deoxynucleoside-triphosphate DNA precursors (dNTPs). The relationships between dNTPs and error rates have been studied in vitro, but only limited insights exist into these correlation...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2012.10.011

    authors: Schaaper RM,Mathews CK

    更新日期:2013-01-01 00:00:00

  • Neurons and astrocytes exhibit lower activities of global genome nucleotide excision repair than do fibroblasts.

    abstract::Nucleotide excision repair (NER) is a DNA repair pathway, which eliminates various types of helix-distorting DNA damage including some forms of oxidative damage and UV-induced photoproducts. To understand why patients with NER-defective disorders develop progressive neurological abnormalities, we investigated NER capa...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2006.12.006

    authors: Yamamoto A,Nakamura Y,Kobayashi N,Iwamoto T,Yoshioka A,Kuniyasu H,Kishimoto T,Mori T

    更新日期:2007-05-01 00:00:00

  • Proteasome inhibition suppresses DNA-dependent protein kinase activation caused by camptothecin.

    abstract::The ubiquitin-proteasome pathway plays an important role in DNA damage signaling and repair by facilitating the recruitment and activation of DNA repair factors and signaling proteins at sites of damaged chromatin. Proteasome activity is generally not thought to be required for activation of apical signaling kinases i...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2009.10.008

    authors: Sakasai R,Teraoka H,Tibbetts RS

    更新日期:2010-01-02 00:00:00

  • HPV induction of APOBEC3 enzymes mediate overall survival and response to cisplatin in head and neck cancer.

    abstract::Human papillomavirus (HPV) is associated with the development of head and neck squamous cell carcinomas (HNSC). Cisplatin is used to treat HNSC and induces DNA adducts including interstrand crosslinks (ICLs). Previous reports have shown that HPV positive HNSC patients respond better to cisplatin therapy. Our previous ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2020.102802

    authors: Conner KL,Shaik AN,Ekinci E,Kim S,Ruterbusch JJ,Cote ML,Patrick SM

    更新日期:2020-03-01 00:00:00

  • A quest to understand molecular mechanisms for genetic stability.

    abstract::In the midst of the post-war turmoil in Japan, I fortunately followed a path to become a scientist. Sometime at an early stage of my career, I encountered the problem of the cellular response to DNA damage and had the chance to discover a DNA repair enzyme. This event greatly influenced the subsequent course of my res...

    journal_title:DNA repair

    pub_type: 传,历史文章,杂志文章

    doi:10.1016/j.dnarep.2006.03.002

    authors: Sekiguchi M

    更新日期:2006-06-10 00:00:00

  • Enhanced gene amplification in human cells knocked down for DNA-PKcs.

    abstract::Gene amplification, a key mechanism for oncogene activation and drug resistance in tumour cells, involves the generation and joining of DNA double-strand breaks. Amplified DNA can be carried either on intra-chromosomal arrays or on extra-chromosomal elements (double minutes). We previously showed that, in rodent cells...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2008.08.015

    authors: Salzano A,Kochiashvili N,Nergadze SG,Khoriauli L,Smirnova A,Ruiz-Herrera A,Mondello C,Giulotto E

    更新日期:2009-01-01 00:00:00

  • XRCC1 deficiency influences the cytotoxicity and the genomic instability induced by Me-lex, a specific inducer of N3-methyladenine.

    abstract::Me-lex is a sequence-specific alkylating agent synthesized to preferentially (>90%) generate N3-methyladenine (3-mA) in the minor groove of double-strand DNA, in A-T rich regions. In this paper we investigated the effect of XRCC1 deficiency in the processing of 3-mA adducts generated by Me-lex, through the molecular a...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2010.03.016

    authors: Russo D,Fronza G,Ottaggio L,Monti P,Perfumo C,Inga A,Iyer P,Gold B,Menichini P

    更新日期:2010-07-01 00:00:00

  • A new perspective on oxidation of DNA repair proteins and cancer.

    abstract::Reactive oxygen and nitrogen species (RONS) are formed as byproducts of many endogenous cellular processes, in response to infections, and upon exposure to various environmental factors. An increase in RONS can saturate the antioxidation system and leads to oxidative stress. Consequently, macromolecules are targeted f...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2019.02.006

    authors: Alnajjar KS,Sweasy JB

    更新日期:2019-04-01 00:00:00

  • The hidden side of unstable DNA repeats: Mutagenesis at a distance.

    abstract::Structure-prone DNA repeats are common components of genomic DNA in all kingdoms of life. In humans, these repeats are linked to genomic instabilities that result in various hereditary disorders, including many cancers. It has long been known that DNA repeats are not only highly polymorphic in length but can also caus...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2015.04.020

    authors: Shah KA,Mirkin SM

    更新日期:2015-08-01 00:00:00

  • Measurement of DNA base and nucleotide excision repair activities in mammalian cells and tissues using the comet assay--a methodological overview.

    abstract::There is an increasing demand for phenotyping assays in the field of human functional genetics. DNA repair activity is representative of this functional approach, being seen as a valuable biomarker related to cancer risk. Repair activity is evaluated by incubating a cell extract with a DNA substrate containing lesions...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2013.07.011

    authors: Azqueta A,Langie SA,Slyskova J,Collins AR

    更新日期:2013-11-01 00:00:00

  • Double-strand break repair plays a role in repeat instability in a fragile X mouse model.

    abstract::Expansion of a CGG-repeat tract in the 5' UTR of FMR1 is responsible for the Fragile X-related disorders (FXDs), FXTAS, FXPOI and FXS. Previous work in a mouse model of these disorders has implicated proteins in the base excision and the mismatch repair (MMR) pathways in the expansion mechanism. However, the precise r...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2018.12.004

    authors: Gazy I,Hayward B,Potapova S,Zhao X,Usdin K

    更新日期:2019-02-01 00:00:00

  • The endonuclease domain of Bacillus subtilis MutL is functionally asymmetric.

    abstract::DNA mismatch repair is an evolutionarily conserved repair pathway that corrects replication errors. In most prokaryotes and all eukaryotes, the mismatch repair protein MutL is a sequence-unspecific endonuclease that nicks the newly synthesized strand and marks it for repair. Although the sequence of the endonuclease d...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2018.10.003

    authors: Liu L,Ortiz Castro MC,Rodríguez González J,Pillon MC,Guarné A

    更新日期:2019-01-01 00:00:00

  • A der(8)t(8;11) chromosome in the Karpas-620 myeloma cell line expresses only cyclin D1: yet both cyclin D1 and MYC are repositioned in close proximity to the 3'IGH enhancer.

    abstract::The Karpas-620 human myeloma cell line (HMCL) expresses high levels of Cyclin D1 (CCND1), but has a der(8)t(8;11) and a der(14)t(8;14), and not a conventional t(11;14). Fluorescent in situ hybridization (FISH) and array comparative genomic hybridization (aCGH) studies suggest that der(14)t(11;14) from a primary transl...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2008.11.010

    authors: Dib A,Glebov OK,Shou Y,Singer RH,Kuehl WM

    更新日期:2009-03-01 00:00:00

  • Sensitivity of human cells expressing low-fidelity or weak-catalytic-activity variants of DNA polymerase ζ to genotoxic stresses.

    abstract::Translesion DNA polymerases (TLS pols) play critical roles in defense mechanisms against genotoxic agents. The defects or mutations of TLS pols are predicted to result in hypersensitivity of cells to environmental mutagens. In this study, human cells expressing DNA polymerase ζ (Pol ζ) variants with low fidelity or we...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2016.06.002

    authors: Suzuki T,Grúz P,Honma M,Adachi N,Nohmi T

    更新日期:2016-09-01 00:00:00

  • MDC1 is ubiquitylated on its tandem BRCT domain and directly binds RAP80 in a UBC13-dependent manner.

    abstract::The cellular response to DNA damage is essential for maintenance of genomic stability. MDC1 is a key member of the DNA damage response. It is an adaptor protein that binds and recruits proteins to sites of DNA damage, a crucial step for a proper response. MDC1 contains several protein-protein interacting modules, incl...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2011.04.016

    authors: Strauss C,Halevy T,Macarov M,Argaman L,Goldberg M

    更新日期:2011-08-15 00:00:00

  • Promoter methylation of O(6)-methylguanine-DNA-methyltransferase in lung cancer is regulated by p53.

    abstract::Methylation of the O(6)-methylguanine-DNA-methyltransferase (MGMT) promoter is associated with G:C to A:T transitions in the p53 gene in various human cancers, including lung cancer. In tumors with p53 mutation, MGMT promoter methylation is more common in advanced tumors than in early tumors. However, in tumors with w...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2008.04.016

    authors: Lai JC,Cheng YW,Goan YG,Chang JT,Wu TC,Chen CY,Lee H

    更新日期:2008-08-02 00:00:00

  • The splicing component ISY1 regulates APE1 in base excision repair.

    abstract::The integrity of cellular genome is continuously challenged by endogenous and exogenous DNA damaging agents. If DNA damage is not removed in a timely fashion the replisome may stall at DNA lesions, causing fork collapse and genetic instability. Base excision DNA repair (BER) is the most important pathway for the remov...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2019.102769

    authors: Jaiswal AS,Williamson EA,Srinivasan G,Kong K,Lomelino CL,McKenna R,Walter C,Sung P,Narayan S,Hromas R

    更新日期:2020-02-01 00:00:00

  • A method to accurately quantitate intensities of (32)P-DNA bands when multiple bands appear in a single lane of a gel is used to study dNTP insertion opposite a benzo[a]pyrene-dG adduct by Sulfolobus DNA polymerases Dpo4 and Dbh.

    abstract::Quantitating relative (32)P-band intensity in gels is desired, e.g., to study primer-extension kinetics of DNA polymerases (DNAPs). Following imaging, multiple (32)P-bands are often present in lanes. Though individual bands appear by eye to be simple and well-resolved, scanning reveals they are actually skewed-Gaussia...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2014.10.001

    authors: Sholder G,Loechler EL

    更新日期:2015-01-01 00:00:00

  • Influence of XPB helicase on recruitment and redistribution of nucleotide excision repair proteins at sites of UV-induced DNA damage.

    abstract::The XPB DNA helicase, a subunit of the basal transcription factor TFIIH, is also involved in nucleotide excision repair (NER). We examined recruitment of NER proteins in XP-B cells from patients with mild or severe xeroderma pigmentosum (XP) having different XPB mutations using local UV-irradiation through filters wit...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2007.03.025

    authors: Oh KS,Imoto K,Boyle J,Khan SG,Kraemer KH

    更新日期:2007-09-01 00:00:00

  • SSB recruitment of Exonuclease I aborts template-switching in Escherichia coli.

    abstract::Misalignment of a nascent strand and the use of an alternative template during DNA replication, a process termed "template-switching", can give rise to frequent mutations and genetic rearrangements. Mutational hotspots are frequently found associated with imperfect inverted repeats ("quasipalindromes" or "QPs") in man...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2017.05.007

    authors: Laranjo LT,Gross SJ,Zeiger DM,Lovett ST

    更新日期:2017-09-01 00:00:00