Comparative specificities of two evolutionarily divergent hydrolases involved in microbial degradation of polychlorinated biphenyls.

Abstract:

:2-Hydroxy-6-oxo-6-phenylhexa-2,4-dienoate (HOPDA) hydrolase (BphD) is a key determinant in the aerobic transformation of polychlorinated biphenyls (PCBs) by Burkholderia sp. strain LB400 (S. Y. K. Seah, G. Labbé, S. Nerdinger, M. Johnson, V. Snieckus, and L. D. Eltis, J. Biol. Chem. 275:15701-15708, 2000). To determine whether this is also true in divergent biphenyl degraders, the homologous hydrolase of Rhodococcus globerulus P6, BphD(P6), was hyperexpressed, purified to apparent homogeneity, and studied by steady-state kinetics. BphD(P6) hydrolyzed HOPDA with a k(cat)/K(m) of 1.62 (+/- 0.03) x 10(7) M(-1) s(-1) (100 mM phosphate [pH 7.5], 25 degrees C), which is within 70% of that of BphD(LB400). BphD(P6) was also similar to BphD(LB400) in that it catalyzed the hydrolysis of HOPDAs bearing chloro substituents on the phenyl moiety at least 25 times more specifically than those bearing chloro substituents on the dienoate moiety. However, the rhodococcal enzyme was significantly more specific for 9-Cl and 10-Cl HOPDAs, catalyzing the hydrolysis of 9-Cl, 10-Cl, and 9,10-diCl HOPDAs two- to threefold respectively, more specifically than HOPDA. Moreover, 4-Cl HOPDA competitively inhibited BphD(P6) more effectively than 3-Cl HOPDA, which is the inverse of what was observed in BphD(LB400). These results demonstrate that BphD is a key determinant in the aerobic transformation of PCBs by divergent biphenyl degraders, but that there exists significant diversity in the specificity of these biphenyl hydrolases.

journal_name

J Bacteriol

journal_title

Journal of bacteriology

authors

Seah SY,Labbé G,Kaschabek SR,Reifenrath F,Reineke W,Eltis LD

doi

10.1128/JB.183.5.1511-1516.2001

keywords:

subject

Has Abstract

pub_date

2001-03-01 00:00:00

pages

1511-6

issue

5

eissn

0021-9193

issn

1098-5530

journal_volume

183

pub_type

杂志文章
  • Isolation and characterization of the cis-trans-unsaturated fatty acid isomerase of Pseudomonas oleovorans GPo12.

    abstract::Pseudomonas oleovorans contains an isomerase which catalyzes the cis-trans conversion of the abundant unsaturated membrane fatty acids 9-cis-hexadecenoic acid (palmitoleic acid) and 11-cis-octadecenoic acid (vaccenic acid). We purified the isomerase from the periplasmic fraction of Pseudomonas oleovorans. The molecula...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.181.10.3256-3261.1999

    authors: Pedrotta V,Witholt B

    更新日期:1999-05-01 00:00:00

  • Beta-2-linked glucans secreted by fast-growing species of Rhizobium.

    abstract::Fast-growing species of Rhizobium were found to secrete low-molecular-weight beta-2-linked glucans when cultured in synthetic liquid medium. These glucans are quite similar to beta-2-linked glucans produced by species of Agrobacterium. No reducing terminus was detected in these glucans. ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.142.1.243-248.1980

    authors: York WS,McNeil M,Darvill AG,Albersheim P

    更新日期:1980-04-01 00:00:00

  • Crystal structure of the PdxY Protein from Escherichia coli.

    abstract::The crystal structure of Escherichia coli PdxY, the protein product of the pdxY gene, has been determined to a 2.2-A resolution. PdxY is a member of the ribokinase superfamily of enzymes and has sequence homology with pyridoxal kinases that phosphorylate pyridoxal at the C-5' hydroxyl. The protein is a homodimer with ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.186.23.8074-8082.2004

    authors: Safo MK,Musayev FN,Hunt S,di Salvo ML,Scarsdale N,Schirch V

    更新日期:2004-12-01 00:00:00

  • Transductional analysis of Pseudomonas aeruginosa methionineless auxotrophs.

    abstract::Seventy-one methionineless and cysteineless auxotrophs of Pseudomonas aeruginosa were placed into nine groups on the basis of their growth on methionine precursors and the cross-feeding response. Transduction experiments with bacteriophage F116 indicated the presence of four linkage groups among the methionineless mut...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.97.1.210-216.1969

    authors: Calhoun DH,Feary TW

    更新日期:1969-01-01 00:00:00

  • Novel missense mutations that affect the transport function of MalK, the ATP-binding-cassette subunit of the Salmonella enterica serovar typhimurium maltose transport system.

    abstract::We report on novel mutations in the malK gene of Salmonella enterica serovar Typhimurium, encoding the ATPase subunit of the maltose transporter (MalFGK(2)). Biochemical analysis suggests that (i) L86 might be involved in a signaling step during substrate translocation and (ii) E306 may be critical for the structural ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.182.5.1432-1436.2000

    authors: Hunke S,Landmesser H,Schneider E

    更新日期:2000-03-01 00:00:00

  • Molecular analysis of the cryptic and functional phn operons for phosphonate use in Escherichia coli K-12.

    abstract::We cloned the cryptic phn operon of a K-12 strain, phn(EcoK), and analyzed the nucleotide sequence of the phn region (11,672 bp). An mRNA start site upstream of the phnC gene was identified by S1 nuclease mapping. The pho regulon activator PhoB protects a pho box region near the mRNA start in DNase I footprinting and ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.173.8.2665-2672.1991

    authors: Makino K,Kim SK,Shinagawa H,Amemura M,Nakata A

    更新日期:1991-04-01 00:00:00

  • Crystalline inclusions of bacterium 22M.

    abstract::Crystalline inclusions occur in bacterium 22M. Arrays consist of parallel rows of polyhedral subunits (7.5 nm in diameter), 2.0 nm apart, with a distance of 3.0 nm between rows. ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.98.3.1390-1394.1969

    authors: Kim KS,Barksdale L

    更新日期:1969-06-01 00:00:00

  • Protein synthesis during germination of Allomyces macrogynus mitospores.

    abstract::Protein synthesis in Allomyces marcogynus mitospores began at the time of encystment and was required for further germination. The rate of protein synthesis in germinating spores decreased in the absence of ribonucleic acid synthesis relative to the uninhibited control. There was a concomitant decrease in polysome con...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.143.3.1498-1500.1980

    authors: Smith BA,Burke DD

    更新日期:1980-09-01 00:00:00

  • Detergent-resistant Streptococcus faecium derivatives that display conditional penicillin lysis.

    abstract::Three spontaneous derivatives of Streptococcus faecium ATCC 9790, originally isolated as conditionally Triton X-100 detergent-resistant at 25 degrees C, displayed normal penicillin-induced rates of lysis at 37 degrees C but substantially reduced rates of lysis and killing at 25 degrees C. The addition of exogenous uns...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.159.2.805-807.1984

    authors: Pucci MJ,Daneo-Moore L

    更新日期:1984-08-01 00:00:00

  • Genetic evidence for a repressor of synthesis of cytosine deaminase and purine biosynthesis enzymes in Escherichia coli.

    abstract::Addition of purines to the growth medium of Escherichia coli represses synthesis of cytosine deaminase (codA) and enzymes of purine de novo synthesis. After Tn10 mutagenesis, mutants displaying derepressed levels of cytosine deaminase in the presence of hypoxanthine were isolated. One of these had simultaneously acqui...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.171.4.2124-2127.1989

    authors: Kilstrup M,Meng LM,Neuhard J,Nygaard P

    更新日期:1989-04-01 00:00:00

  • Utilization of octopine and nopaline by Agrobacterium.

    abstract::Tests for utilization of d-octopine and nopaline in defined media containing a carbon and nitrogen source were made on 60 strains of Agrobacterium representing four species and on a representative of each of five species of Rhizobium. Among 46 virulent strains of Agrobacterium, only two strains were found which utiliz...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.116.1.378-383.1973

    authors: Lippincott JA,Beiderbeck R,Lippincott BB

    更新日期:1973-10-01 00:00:00

  • The linker region of AraC protein.

    abstract::AraC protein, a transcriptional regulator of the L-arabinose operon in Escherichia coli, is dimeric. Each monomer consists of a domain for DNA binding plus transcription activation and a domain for dimerization plus arabinose binding. These are connected to one another by a linker region of at least 5 amino acids. Her...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.178.24.7025-7030.1996

    authors: Eustance RJ,Schleif RF

    更新日期:1996-12-01 00:00:00

  • Coexpression of colanic acid and serotype-specific capsular polysaccharides in Escherichia coli strains with group II K antigens.

    abstract::In Escherichia coli K-12, the rcsA and rcsB gene products are positive regulators in expression of the slime polysaccharide colanic acid. We have previously demonstrated the presence of rcsA sequences in E. coli K1 and K5, strains with group II capsular K antigens, and shown that introduction of multicopy rcsA into th...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.175.20.6725-6730.1993

    authors: Keenleyside WJ,Bronner D,Jann K,Jann B,Whitfield C

    更新日期:1993-10-01 00:00:00

  • The penicillinase of Bacillus licheniformis is an outer membrane protein in Escherichia coli.

    abstract::The cloned gene coding for Bacillus licheniformis penicillinase (penP) was introduced into Escherichia coli in a heat-inducible lambda Qam vector. After induction, significant amounts of penicillinase were synthesized in the new host. The cellular location of the penicillinase was found to be almost exclusively the ou...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.155.2.657-663.1983

    authors: Sarvas MO,Palva IA

    更新日期:1983-08-01 00:00:00

  • An amino acid substitution in penicillin-binding protein 3 creates pointed polar caps in Escherichia coli.

    abstract::The pbpB gene product penicillin-binding protein 3 (PBP3) of Escherichia coli is one of the major targets of beta-lactam antibiotics. At the permissive temperature, the temperature-sensitive pbpBr1 mutant, which was obtained after selection for increased resistance to cephalexin, shows a dramatic change in shape which...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.170.10.4828-4837.1988

    authors: Taschner PE,Ypenburg N,Spratt BG,Woldringh CL

    更新日期:1988-10-01 00:00:00

  • The LiaFSR system regulates the cell envelope stress response in Streptococcus mutans.

    abstract::Maintaining cell envelope integrity is critical for bacterial survival, including bacteria living in a complex and dynamic environment such as the human oral cavity. Streptococcus mutans, a major etiological agent of dental caries, uses two-component signal transduction systems (TCSTSs) to monitor and respond to vario...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.01563-08

    authors: Suntharalingam P,Senadheera MD,Mair RW,Lévesque CM,Cvitkovitch DG

    更新日期:2009-05-01 00:00:00

  • Role of the CheW protein in bacterial chemotaxis: overexpression is equivalent to absence.

    abstract::The cheW gene from Escherichia coli has been cloned an inducible promoter, and the effects of the overproduction of the CheW protein on chemotactic behavior and receptor covalent modification have been examined. Plasmids that contain the cheW gene behind a regulatable promoter complement a cheW mutation when the CheW ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.171.11.6271-6278.1989

    authors: Sanders DA,Mendez B,Koshland DE Jr

    更新日期:1989-11-01 00:00:00

  • Deoxyribonucleic acid synthesis in Saccharomyces cerevisiae cells permeabilized with ether.

    abstract::Cells of Saccharomyces cerevisiae permeabilized by treatment with ether take up and incorporate exogenous deoxynucleoside triphosphate into deoxyribonucleic acid (DNA). With rho(+) strains, more than 95% of the product was mitochondrial DNA (mtDNA). This report characterizes ether-permeabilized yeast cells and describ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.140.2.333-341.1979

    authors: Oertel W,Goulian M

    更新日期:1979-11-01 00:00:00

  • Localization and regulation of bacteriophage Mu promoters.

    abstract::Mu promoters active during the lytic cycle were located by isolating RNA at various times after induction of Mu prophages, radiolabeling it by capping in vitro, and hybridizing it to Mu DNA fragments on Southern blots. Signals were detected from four new promoters in addition to the previously characterized Pe (early)...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.171.6.3440-3448.1989

    authors: Stoddard SF,Howe MM

    更新日期:1989-06-01 00:00:00

  • Soluble cytochromes from the marine methanotroph Methylomonas sp. strain A4.

    abstract::Soluble c-type cytochromes are central to metabolism of C1 compounds in methylotrophic bacteria. In order to characterize the role of c-type cytochromes in methane-utilizing bacteria (methanotrophs), we have purified four different cytochromes, cytochromes c-554, c-553, c-552, and c-551, from the marine methanotroph M...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.172.9.5360-5367.1990

    authors: DiSpirito AA,Lipscomb JD,Lidstrom ME

    更新日期:1990-09-01 00:00:00

  • Control of the synthesis of alkaline phosphatase and the phosphate-binding protein in Escherichia coli.

    abstract::Using sodium dodecyl sulfate-polyacrylamide gel electrophoresis and immunological techniques, we have compared the synthesis of the phoA protein (alkaline phosphatase) and the phoS protein (phosphate-binding protein) in response to the level of phosphate in the medium in different genetic backgrounds containing the kn...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.127.1.595-609.1976

    authors: Willsky GR,Malamy MH

    更新日期:1976-07-01 00:00:00

  • Metabolism of 6-aminonicotinic acid in Escherichia coli.

    abstract::A late-log-phase culture of an Escherichia coli nadB pncA double mutant took up 6-[7-14C]aminonicotinic acid and excreted 6-[14C]aminonicotinamide. This mutant also accumulated intracellularly several radioactive compounds which have been tentatively identified as 6-amino analogs of compounds in the pyridine nucleotid...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.131.3.789-794.1977

    authors: Cobb JR,Pearcy SC,Gholson RK

    更新日期:1977-09-01 00:00:00

  • Monoubiquitination is sufficient to signal internalization of the maltose transporter in Saccharomyces cerevisiae.

    abstract::Monoubiquitination of the 12-transmembrane segment (12-TMS) Saccharomyces cerevisiae maltose transporter promoted the maximal internalization rate of this protein. This modification is similar to that of the 7-TMS alpha-factor receptor but different from that of the 12-TMS uracil and general amino acid permeases. This...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.182.1.241-243.2000

    authors: Lucero P,Peñalver E,Vela L,Lagunas R

    更新日期:2000-01-01 00:00:00

  • Transcriptional organization of the czc heavy-metal homeostasis determinant from Alcaligenes eutrophus.

    abstract::The Czc system of Alcaligenes eutrophus mediates resistance to cobalt, zinc, and cadmium through ion efflux catalyzed by the CzcCB2A cation-proton antiporter. DNA sequencing of the region upstream of the czcNICBADRS determinant located on megaplasmid pMOL30 revealed the 5' end of czcN and a gene for a MgtC-like protei...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.181.8.2385-2393.1999

    authors: Grosse C,Grass G,Anton A,Franke S,Santos AN,Lawley B,Brown NL,Nies DH

    更新日期:1999-04-01 00:00:00

  • Major proteins of the Escherichia coli outer cell envelope membrane as bacteriophage receptors.

    abstract::Three Escherichia coli phages, TuIa, TuIb, and TuII, were isolated from local sewage. We present evidence that they use the major outer membrane proteins Ia, Ib, and II, respectively, as receptors. In all cases the proteins, under the experimental conditions used, required lipopolysaccharide to exhibit their receptor ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.131.3.821-829.1977

    authors: Datta DB,Arden B,Henning U

    更新日期:1977-09-01 00:00:00

  • Cyclic adenosine 3',5'-monophosphate-mediated hyperinduction of araBAD and lacZYA expression in a crp mutant of Escherichia coli K-12.

    abstract::A spontaneous lac+ revertant of an adenylate cyclase deletion strain of Escherichia coli K-12 was isolated and characterized. This revertant, designated strain KC20, exhibited a pleiotropic suppression of the adenylate cyclase defect, with the crp locus being the site of the suppressor mutation. Cyclic adenosine 3',5'...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.147.2.500-508.1981

    authors: Bankaitis VA,Kline EL

    更新日期:1981-08-01 00:00:00

  • A nine-residue synthetic propeptide enhances secretion efficiency of heterologous proteins in Lactococcus lactis.

    abstract::Lactococcus lactis, a gram-positive organism widely used in the food industry, is a potential candidate for the secretion of biologically useful proteins. We examined the secretion efficiency and capacity of L. lactis by using the Staphylococcus aureus nuclease (Nuc) as a heterologous model protein. When expressed in ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.180.7.1895-1903.1998

    authors: Le Loir Y,Gruss A,Ehrlich SD,Langella P

    更新日期:1998-04-01 00:00:00

  • Growth phase and pH influence peptide signaling for competence development in Streptococcus mutans.

    abstract::The development of competence by the dental caries pathogen Streptococcus mutans is mediated primarily through the alternative sigma factor ComX (SigX), which is under the control of multiple regulatory systems and activates the expression of genes involved in DNA uptake and recombination. Here we report that the indu...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.00995-13

    authors: Guo Q,Ahn SJ,Kaspar J,Zhou X,Burne RA

    更新日期:2014-01-01 00:00:00

  • Effect of site-specific mutations in different phosphotransfer domains of the chemosensory protein ChpA on Pseudomonas aeruginosa motility.

    abstract::The virulence of Pseudomonas aeruginosa and other surface pathogens involves the coordinate expression of a wide range of virulence determinants, including type IV pili. These surface filaments are important for the colonization of host epithelial tissues and mediate bacterial attachment to, and translocation across, ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.00157-06

    authors: Leech AJ,Mattick JS

    更新日期:2006-12-01 00:00:00

  • SRP19 is a dispensable component of the signal recognition particle in Archaea.

    abstract::In vitro, archaeal SRP54 binds SRP RNA in the absence of SRP19, suggesting the latter to be expendable in Archaea. Accordingly, the Haloferax volcanii SRP19 gene was deleted. Although normally transcribed at a level comparable to that of the essential SRP54 gene, SRP19 deletion had no effect on cell growth, membrane p...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.01410-06

    authors: Yurist S,Dahan I,Eichler J

    更新日期:2007-01-01 00:00:00