Slipped-strand mispairing at noncontiguous repeats in Poecilia reticulata: a model for minisatellite birth.

Abstract:

:The standard slipped-strand mispairing (SSM) model for the formation of variable number tandem repeats (VNTRs) proposes that a few tandem repeats, produced by chance mutations, provide the "raw material" for VNTR expansion. However, this model is unlikely to explain the formation of VNTRs with long motifs (e.g., minisatellites), because the likelihood of a tandem repeat forming by chance decreases rapidly as the length of the repeat motif increases. Phylogenetic reconstruction of the birth of a mitochondrial (mt) DNA minisatellite in guppies suggests that VNTRs with long motifs can form as a consequence of SSM at noncontiguous repeats. VNTRs formed in this manner have motifs longer than the noncontiguous repeat originally formed by chance and are flanked by one unit of the original, noncontiguous repeat. SSM at noncontiguous repeats can therefore explain the birth of VNTRs with long motifs and the "imperfect" or "short direct" repeats frequently observed adjacent to both mtDNA and nuclear VNTRs.

journal_name

Genetics

journal_title

Genetics

authors

Taylor JS,Breden F

keywords:

subject

Has Abstract

pub_date

2000-07-01 00:00:00

pages

1313-20

issue

3

eissn

0016-6731

issn

1943-2631

journal_volume

155

pub_type

杂志文章

相关文献

GENETICS文献大全
  • Quantitative trait loci (QTL) detection in multicross inbred designs: recovering QTL identical-by-descent status information from marker data.

    abstract::Mapping quantitative trait loci in plants is usually conducted using a population derived from a cross between two inbred lines. The power of such QTL detection and the parameter estimates depend largely on the choice of the two parental lines. Thus, the QTL detected in such populations represent only a small part of ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.104.028993

    authors: Crepieux S,Lebreton C,Servin B,Charmet G

    更新日期:2004-11-01 00:00:00

  • Euploid derivatives of duplications from a translocation in neurospora.

    abstract::Nontandem terminal chromosome duplications derived from N. crassa translocation T(I-->VI)NM103 give rise mitotically to some daughter nuclei which have become euploid by loss of one or the other of the two duplicated segments. Loss of the segment in normal sequence occurs as often as loss of the translocated segment. ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Turner BC

    更新日期:1977-03-01 00:00:00

  • Microgeographic differentiation of chromosomal and enzyme polymorphisms in Drosophila persimilis.

    abstract::We studied microgeographic and temporal genetic differentiation in natural populations of Drosophila persimilis with respect to chromosome inversion and enzyme polymorphisms. Both inversion frequencies and allozyme frequencies varied significantly over short distances. Neither differed significantly between morning an...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Taylor CE,Powell JR

    更新日期:1977-04-01 00:00:00

  • In vivo analysis of Saccharomyces cerevisiae COX2 mRNA 5'-untranslated leader functions in mitochondrial translation initiation and translational activation.

    abstract::We have used mutational and revertant analysis to study the elements of the 54-nucleotide COX2 5'-untranslated leader involved in translation initiation in yeast mitochondria and in activation by the COX2 translational activator. Pet111p. We generated a collection of mutants with substitutions spanning the entire COX2...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Dunstan HM,Green-Willms NS,Fox TD

    更新日期:1997-09-01 00:00:00

  • Evidence for positive selection in the superoxide dismutase (Sod) region of Drosophila melanogaster.

    abstract::DNA sequence variation in a 1410-bp region including the Cu,Zn Sod locus was examined in 41 homozygous lines of Drosophila melanogaster. Fourteen lines were from Barcelona, Spain, 25 were from California populations and the other two were from laboratory stocks. Two common electromorphs, SODS and SODF, are segregating...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Hudson RR,Bailey K,Skarecky D,Kwiatowski J,Ayala FJ

    更新日期:1994-04-01 00:00:00

  • The DrosDel deletion collection: a Drosophila genomewide chromosomal deficiency resource.

    abstract::We describe a second-generation deficiency kit for Drosophila melanogaster composed of molecularly mapped deletions on an isogenic background, covering approximately 77% of the Release 5.1 genome. Using a previously reported collection of FRT-bearing P-element insertions, we have generated 655 new deletions and verifi...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.076216

    authors: Ryder E,Ashburner M,Bautista-Llacer R,Drummond J,Webster J,Johnson G,Morley T,Chan YS,Blows F,Coulson D,Reuter G,Baisch H,Apelt C,Kauk A,Rudolph T,Kube M,Klimm M,Nickel C,Szidonya J,Maróy P,Pal M,Rasmuson-Lestan

    更新日期:2007-09-01 00:00:00

  • A genetic map of quantitative trait loci for body weight in the mouse.

    abstract::The genetic basis of body weight in the mouse was investigated by measuring frequency changes of microsatellite marker alleles in lines divergently selected for body weight from a base population of a cross between two inbred strains. In several regions of the genome, sharp peaks of frequency change at linked markers ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Keightley PD,Hardge T,May L,Bulfield G

    更新日期:1996-01-01 00:00:00

  • Suppressor U1 snRNAs in Drosophila.

    abstract::Although the role of U1 small nuclear RNAs (snRNAs) in 5' splice site recognition is well established, suppressor U1 snRNAs active in intact multicellular animals have been lacking. Here we describe suppression of a 5' splice site mutation in the Drosophila melanogaster white gene (wDR18) by compensatory changes in U1...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Lo PC,Roy D,Mount SM

    更新日期:1994-10-01 00:00:00

  • Sojourn times and substitution rate at overdominant and linked neutral loci.

    abstract::The sojourn times until fixation of an overdominant allele were investigated based on the diffusion equation. Furthermore, the rate of accumulation of mutations, or the substitution rate, was predicted from the mean extinction time of a common overdominant allele. The substitution rate calculated theoretically agreed ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Ohashi J,Tokunaga K

    更新日期:2000-06-01 00:00:00

  • Spatial structure of two-locus genotypes under isolation by distance.

    abstract::Extensive Monte Carlo simulations are conducted of spatial distributions of two-locus genotypes in large, continuous populations under isolation by distance models. The results show that substantial patches of double homozygotes are present in the spatial structures, even when loci are unlinked. The stochastic spread ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Epperson BK

    更新日期:1995-05-01 00:00:00

  • Recombination-deficient deletions in bacteriophage lambda and their interaction with chi mutations.

    abstract::We have isolated a new class of deletion mutants of phage lambda that extend from the prophage attachment site, att, into the gam and cIII genes. In this respect they are similar to certain of the lambda pbio transducing phage, but they differ in having a low burst size and in forming minute plaques. Lytically grown s...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Henderson D,Weil J

    更新日期:1975-02-01 00:00:00

  • Maize adaptation to temperate climate: relationship between population structure and polymorphism in the Dwarf8 gene.

    abstract::To investigate the genetic basis of maize adaptation to temperate climate, collections of 375 inbred lines and 275 landraces, representative of American and European diversity, were evaluated for flowering time under short- and long-day conditions. The inbred line collection was genotyped for 55 genomewide simple sequ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.105.048603

    authors: Camus-Kulandaivelu L,Veyrieras JB,Madur D,Combes V,Fourmann M,Barraud S,Dubreuil P,Gouesnard B,Manicacci D,Charcosset A

    更新日期:2006-04-01 00:00:00

  • Amplification of KP elements associated with the repression of hybrid dysgenesis in Drosophila melanogaster.

    abstract::Mobile P elements in Drosophila melanogaster cause hybrid dysgenesis if their mobility is not repressed. One type of repression, termed P cytotype, is a complex interaction between chromosomes carrying P elements and cytoplasm and is transmitted through the cytoplasm only of females. Another type of repression is foun...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Jackson MS,Black DM,Dover GA

    更新日期:1988-12-01 00:00:00

  • Unexpected function of the glucanosyltransferase Gas1 in the DNA damage response linked to histone H3 acetyltransferases in Saccharomyces cerevisiae.

    abstract::Chromatin organization and structure are crucial for transcriptional regulation, DNA replication, and damage repair. Although initially characterized in remodeling cell wall glucans, the β-1,3-glucanosyltransferase Gas1 was recently discovered to regulate transcriptional silencing in a manner separable from its activi...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.113.158824

    authors: Eustice M,Pillus L

    更新日期:2014-04-01 00:00:00

  • Host and phi X 174 mutations affecting the morphogenesis or stabilization of the 50S complex, a single-stranded DNA synthesizing intermediate.

    abstract::The morphogenetic pathway of bacteriophage phi X 174 was investigated in rep mutant hosts that specifically block stage III single-stranded DNA synthesis. The defects conferred by the mutant rep protein most likely affect the formation or stabilization of the 50S complex, a single-stranded DNA synthesizing intermediat...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Ekechukwu MC,Oberste DJ,Fane BA

    更新日期:1995-08-01 00:00:00

  • Spontaneous IR duplications generated at mitosis in Aspergillus nidulans: further evidence of a preferential site of transposed attachment.

    abstract::A radiation-induced translocation, T(IIR----IIIL), has been shown to be nonreciprocal and to have most of IIR, including its terminus, attached uninverted to the terminus of IIIL.--Progeny with the IIR segment in duplicate, obtained from crosses of T(IIR----IIIL) to strains with a standard genome, were unstable at mit...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Daud F,Ortori GS,Roper JA

    更新日期:1985-06-01 00:00:00

  • Rearrangement of genes located on homologous chromosomal segments in mouse and man: the location of genes for alpha- and beta-interferon, alpha-1 acid glycoprotein-1 and -2, and aminolevulinate dehydratase on mouse chromosome 4.

    abstract::Gene mapping studies to determine the order of alpha- and beta-interferon (Ifa, Ifb), aminolevulinate dehydratase (Lv), and alpha-1 acid glycoprotein-1 and -2 (Orm-1, Orm-2) relative to each other and to the reference genes brown (b), B-cell maturation factor responsiveness (Bmfr-1), and major urinary protein-1 (Mup-1...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Nadeau JH,Berger FG,Kelley KA,Pitha PM,Sidman CL,Worrall N

    更新日期:1986-12-01 00:00:00

  • Rates and patterns of base change in the small subunit ribosomal RNA gene.

    abstract::The small subunit ribosomal RNA gene (srDNA) has been used extensively for phylogenetic analyses. One common assumption in these analyses is that substitution rates are biased toward transitions. We have developed a simple method for estimating relative rates of base change that does not assume rate constancy and take...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Vawter L,Brown WM

    更新日期:1993-06-01 00:00:00

  • Coprinus cinereus rad50 mutants reveal an essential structural role for Rad50 in axial element and synaptonemal complex formation, homolog pairing and meiotic recombination.

    abstract::The Mre11/Rad50/Nbs1 (MRN) complex is required for eukaryotic DNA double-strand break (DSB) repair and meiotic recombination. We cloned the Coprinus cinereus rad50 gene and showed that it corresponds to the complementation group previously named rad12, identified mutations in 15 rad50 alleles, and mapped two of the mu...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.108.092775

    authors: Acharya SN,Many AM,Schroeder AP,Kennedy FM,Savytskyy OP,Grubb JT,Vincent JA,Friedle EA,Celerin M,Maillet DS,Palmerini HJ,Greischar MA,Moncalian G,Williams RS,Tainer JA,Zolan ME

    更新日期:2008-12-01 00:00:00

  • Exportin1 genes are essential for development and function of the gametophytes in Arabidopsis thaliana.

    abstract::Gametes are produced in plants through mitotic divisions in the haploid gametophytes. We investigated the role of EXPORTIN1 (XPO1) genes during the development of both female and male gametophytes of Arabidopsis. Exportins exclude target proteins from the nucleus and are also part of a complex recruited at the kinetoc...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.108.094896

    authors: Blanvillain R,Boavida LC,McCormick S,Ow DW

    更新日期:2008-11-01 00:00:00

  • Characterization of the roles of the Saccharomyces cerevisiae RAD54 gene and a homologue of RAD54, RDH54/TID1, in mitosis and meiosis.

    abstract::The RAD54 gene, which encodes a protein in the SWI2/SNF2 family, plays an important role in recombination and DNA repair in Saccharomyces cerevisiae. The yeast genome project revealed a homologue of RAD54, RDH54/TID1. Properties of the rdh54/tid1 mutant and the rad54 rdh54/tid1 double mutant are shown for mitosis and ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Shinohara M,Shita-Yamaguchi E,Buerstedde JM,Shinagawa H,Ogawa H,Shinohara A

    更新日期:1997-12-01 00:00:00

  • On recombination among In(2L)t, alpha-Gpdh and Adh in Drosophila melanogaster.

    abstract::The occurrence and patterns of linkage disequilibrium between an inversion and allozymic loci within it or nearby have been used in attempts to discriminate among different hypotheses for the maintenance of variability. The interpretation of the data on the best-documented case, that of the nonrandom association betwe...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Malpica JM,Vassallo JM,Frías A,Fuentes-Bol F

    更新日期:1987-01-01 00:00:00

  • Mapping quantitative trait loci for milk production and health of dairy cattle in a large outbred pedigree.

    abstract::Quantitative trait loci (QTL) affecting milk production and health of dairy cattle were mapped in a very large Holstein granddaughter design. The analysis included 1794 sons of 14 sires and 206 genetic markers distributed across all 29 autosomes and flanking an estimated 2497 autosomal cM using Kosambi's mapping funct...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Zhang Q,Boichard D,Hoeschele I,Ernst C,Eggen A,Murkve B,Pfister-Genskow M,Witte LA,Grignola FE,Uimari P,Thaller G,Bishop MD

    更新日期:1998-08-01 00:00:00

  • Frequency-dependent selection and the maintenance of genetic variation: exploring the parameter space of the multiallelic pairwise interaction model.

    abstract::When individuals' fitnesses depend on the genetic composition of the population in which they are found, selection is then frequency dependent. Frequency-dependent selection (FDS) is often invoked as a heuristic explanation for the maintenance of large numbers of alleles at a locus. The pairwise interaction model is a...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.073072

    authors: Trotter MV,Spencer HG

    更新日期:2007-07-01 00:00:00

  • The Drosophila mei-S332 gene promotes sister-chromatid cohesion in meiosis following kinetochore differentiation.

    abstract::The Drosophila mei-S332 gene acts to maintain sister-chromatid cohesion before anaphase II of meiosis in both males and females. By isolating and analyzing seven new alleles and a deficiency uncovering the mei-S332 gene we have demonstrated that the onset of the requirement for mei-S332 is not until late anaphase I. A...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Kerrebrock AW,Miyazaki WY,Birnby D,Orr-Weaver TL

    更新日期:1992-04-01 00:00:00

  • Linkage disequilibrium in related breeding lines of chickens.

    abstract::High-density genotyping of single-nucleotide polymorphisms (SNPs) enables detection of quantitative trait loci (QTL) by linkage disequilibrium (LD) mapping using LD between markers and QTL and the subsequent use of this information for marker-assisted selection (MAS). The success of LD mapping and MAS depends on the e...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.082206

    authors: Andreescu C,Avendano S,Brown SR,Hassen A,Lamont SJ,Dekkers JC

    更新日期:2007-12-01 00:00:00

  • Point mutation rate of bacteriophage PhiX174.

    abstract::The point mutation rate of phage PhiX174 was determined using the fluctuation test. After identifying the genetic changes associated with the selected phenotype, we obtained an estimate of 1.0x10(-6) substitutions per base per round of copying, which is consistent with Drake's rule (0.003 mutations per genome per roun...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.109.106005

    authors: Cuevas JM,Duffy S,Sanjuán R

    更新日期:2009-10-01 00:00:00

  • Isolation and gene expression analysis of Arabidopsis thaliana mutants with constitutive expression of ATL2, an early elicitor-response RING-H2 zinc-finger gene.

    abstract::Genes with unstable transcripts often encode proteins that play important regulatory roles. ATL2 is a member of a multigene family coding highly related RING-H2 zinc-finger proteins that may function as E3 ubiquitin ligases. ATL2 mRNA accumulation occurs rapidly and transiently after incubation with elicitors of patho...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.104.028043

    authors: Serrano M,Guzmán P

    更新日期:2004-06-01 00:00:00

  • Correlation between pairing initiation sites, recombination nodules and meiotic recombination in Sordaria macrospora.

    abstract::The decrease of meiotic exchanges (crossing over and conversion) in two mutants of Sordaria macrospora correlated strongly with a reduction of chiasmata and of both types of "recombination nodules." Serial section reconstruction electron microscopy was used to compare the synapsis pattern of meiotic prophase I in wild...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Zickler D,Moreau PJ,Huynh AD,Slezec AM

    更新日期:1992-09-01 00:00:00

  • Saccharomyces cerevisiae Mer2, Mei4 and Rec114 form a complex required for meiotic double-strand break formation.

    abstract::In budding yeast, at least 10 proteins are required for formation of the double-strand breaks (DSBs) that initiate meiotic recombination. Spo11 is the enzyme responsible for cleaving DNA and is found in a complex that also contains Ski8, Rec102, and Rec104. The Mre11/Rad50/Xrs2 complex is required for both DSB formati...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.106.058768

    authors: Li J,Hooker GW,Roeder GS

    更新日期:2006-08-01 00:00:00