Suppressor U1 snRNAs in Drosophila.

Abstract:

:Although the role of U1 small nuclear RNAs (snRNAs) in 5' splice site recognition is well established, suppressor U1 snRNAs active in intact multicellular animals have been lacking. Here we describe suppression of a 5' splice site mutation in the Drosophila melanogaster white gene (wDR18) by compensatory changes in U1 snRNA. Mutation of positions -1 and +6 of the 5' splice site of the second intron (ACG[GTGAGT to ACC]GTGAGC) results in the accumulation of RNA retaining this 74-nucleotide intron in both transfected cells and transgenic flies. U1-3G, a suppressor U1 snRNA which restores base-pairing at position +6 of the mutant intron, increases the ratio of spliced to unspliced wDR18 RNA up to fivefold in transfected Schneider cells and increases eye pigmentation in wDR18 flies. U1-9G, which targets position -1, suppresses wDR18 in transfected cells less well. U1-3G,9G has the same effect as U1-3G although it accumulates to lower levels. Suppression of wDR18 has revealed that the U1b embryonic variant (G134 to U) is active in Schneider cells and pupal eye discs. However, the combination of 9G with 134U leads to reduced accumulation of both U1b-9G and U1b-3G,9G, possibly because nucleotides 9 and 134 both participate in a potential long-range intramolecular base-pairing interaction. High levels of functional U1-3G suppressor reduce both viability and fertility in transformed flies. These results show that, despite the difficulties inherent in stably altering splice site selection in multicellular organisms, it is possible to obtain suppressor U1 snRNAs in flies.

journal_name

Genetics

journal_title

Genetics

authors

Lo PC,Roy D,Mount SM

subject

Has Abstract

pub_date

1994-10-01 00:00:00

pages

365-78

issue

2

eissn

0016-6731

issn

1943-2631

journal_volume

138

pub_type

杂志文章

相关文献

GENETICS文献大全
  • The neutral coalescent process for recent gene duplications and copy-number variants.

    abstract::I describe a method for simulating samples from gene families of size two under a neutral coalescent process, for the case where the duplicate gene either has fixed recently in the population or is still segregating. When a duplicate locus has recently fixed by genetic drift, diversity in the new gene is expected to b...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.074948

    authors: Thornton KR

    更新日期:2007-10-01 00:00:00

  • The putative RNA helicase Dbp6p functionally interacts with Rpl3p, Nop8p and the novel trans-acting Factor Rsa3p during biogenesis of 60S ribosomal subunits in Saccharomyces cerevisiae.

    abstract::Ribosome biogenesis requires at least 18 putative ATP-dependent RNA helicases in Saccharomyces cerevisiae. To explore the functional environment of one of these putative RNA helicases, Dbp6p, we have performed a synthetic lethal screen with dbp6 alleles. We have previously characterized the nonessential Rsa1p, whose n...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.166.4.1687

    authors: de la Cruz J,Lacombe T,Deloche O,Linder P,Kressler D

    更新日期:2004-04-01 00:00:00

  • Synaptic adjustment of inversion loops in Neurospora crassa.

    abstract::Heterozygotes for three long inversions on chromosome 1 were analyzed by serial reconstruction from electron micrographs. Measurements of loop lengths at different meiotic prophase substages revealed that the homologous synapsis of the inverted region was gradually replaced by nonhomologous synapsis as loops were elim...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Bojko M

    更新日期:1990-03-01 00:00:00

  • Nonlinear tests for genomewide association studies.

    abstract::As millions of single-nucleotide polymorphisms (SNPs) have been identified and high-throughput genotyping technologies have been rapidly developed, large-scale genomewide association studies are soon within reach. However, since a genomewide association study involves a large number of SNPs it is therefore nearly impo...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.106.060491

    authors: Zhao J,Jin L,Xiong M

    更新日期:2006-11-01 00:00:00

  • Implicating SCF complexes in organogenesis in Caenorhabditis elegans.

    abstract::Development of the Caenorhabditis elegans foregut (pharynx) is regulated by a network of proteins that includes the Retinoblastoma protein (pRb) ortholog LIN-35; the ubiquitin pathway components UBC-18 and ARI-1; and PHA-1, a cytoplasmic protein. Loss of pha-1 activity impairs pharyngeal development and body morphogen...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.113.158485

    authors: Polley SR,Kuzmanov A,Kuang J,Karpel J,Lažetić V,Karina EI,Veo BL,Fay DS

    更新日期:2014-01-01 00:00:00

  • Assessing dissimilarity of genes by comparing their RNAse A mismatch cleavage patterns.

    abstract::We propose a simple algorithm for estimating the number of nucleotide differences between a pair of RNA or DNA sequences through comparison of their RNAse A mismatch cleavage patterns. In the RNAse A mismatch cleavage technique two or more sample sequences are hybridized to the same RNA probe, the hybrids are partiall...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Rzhetsky A,Dopazo J,Snyder E,Dangler CA,Ayala FJ

    更新日期:1996-12-01 00:00:00

  • The cytoplasmic end of transmembrane domain 3 regulates the activity of the Saccharomyces cerevisiae G-protein-coupled alpha-factor receptor.

    abstract::The binding of alpha-factor to its receptor (Ste2p) activates a G-protein-signaling pathway leading to conjugation of MATa cells of the budding yeast S. cerevisiae. We conducted a genetic screen to identify constitutively activating mutations in the N-terminal region of the alpha-factor receptor that includes transmem...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Parrish W,Eilers M,Ying W,Konopka JB

    更新日期:2002-02-01 00:00:00

  • Los1p, involved in yeast pre-tRNA splicing, positively regulates members of the SOL gene family.

    abstract::To understand the role of Los1p in pre-tRNA splicing, we sought los1 multicopy suppressors. We found SOL1 that suppresses both point and null LOS1 mutations. Since, when fused to the Ga14p DNA-binding domain, Los1p activates transcription, we tested whether Los1p regulates SOL1. We found that las1 mutants have deplete...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Shen WC,Stanford DR,Hopper AK

    更新日期:1996-06-01 00:00:00

  • Empirical evaluation reveals best fit of a logistic mutation model for human Y-chromosomal microsatellites.

    abstract::The rate of microsatellite mutation is dependent upon both the allele length and the repeat motif, but the exact nature of this relationship is still unknown. We analyzed data on the inheritance of human Y-chromosomal microsatellites in father-son duos, taken from 24 published reports and comprising 15,285 directly ob...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.111.132308

    authors: Jochens A,Caliebe A,Rösler U,Krawczak M

    更新日期:2011-12-01 00:00:00

  • On the overdispersed molecular clock.

    abstract::Rates of molecular evolution at some loci are more irregular than described by simple Poisson processes. Three situations under which molecular evolution would not follow simple Poisson processes are reevaluated from the viewpoint of the neutrality hypothesis: concomitant or multiple substitutions in a gene, fluctuati...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Takahata N

    更新日期:1987-05-01 00:00:00

  • Multi-trait Genomic Selection Methods for Crop Improvement.

    abstract::Plant breeders make selection decisions based on multiple traits, such as yield, plant height, flowering time, and disease resistance. A commonly used approach in multi-trait genomic selection is index selection, which assigns weights to different traits relative to their economic importance. However, classical index ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.120.303305

    authors: Moeinizade S,Kusmec A,Hu G,Wang L,Schnable PS

    更新日期:2020-08-01 00:00:00

  • The genic nature of gamete eliminator in rice.

    abstract::The two cultivated rice species, Oryza sativa and Oryza glaberrima, are morphologically alike but are reproductively isolated from each other by hybrid sterility. The hybrid is male sterile but partially female fertile. Backcross experiments were conducted to introduce an alien factor controlling hybrid sterility from...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Sano Y

    更新日期:1990-05-01 00:00:00

  • Smg1 nonsense mutations do not abolish nonsense-mediated mRNA decay in Drosophila melanogaster.

    abstract::Smg1 is a key component of nonsense-mediated decay (NMD) in Caenorhabditis elegans and mammals. Here we report that two nonsense alleles of the ortholog of Smg1 do not affect NMD in Drosophila melanogaster. ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.105.045674

    authors: Chen Z,Smith KR,Batterham P,Robin C

    更新日期:2005-09-01 00:00:00

  • Molecular variation in chloroplast DNA regions in ancestral species of wheat.

    abstract::Restriction map variation in two 5-6-kb chloroplast DNA regions of five diploid Aegilops species in the section Sitopsis and two wild tetraploid wheats, Triticum dicoccoides and Triticum araraticum, was investigated with a battery of four-cutter restriction enzymes. A single accession each of Triticum durum, Triticum ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Miyashita NT,Mori N,Tsunewaki K

    更新日期:1994-07-01 00:00:00

  • Morphometric Differentiation among Experimental Lines of the Housefly in Relation to a Bottleneck.

    abstract::Differentiation in morphometric traits among experimental populations of the housefly subjected to an experimental bottleneck was examined for replicate lines founded with one, four or 16 pairs of flies. Differentiation among lines within a bottleneck size was significantly greater than predicted by drift in relation ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Bryant EH,Combs LM,McCommas SA

    更新日期:1986-12-01 00:00:00

  • Palindromy and the location of deletion endpoints in Escherichia coli.

    abstract::The contributions of direct and inverted repeats to deletion formation were studied by characterizing Ampr revertants of plasmids with a series of insertion mutations at a specific site in the pBR322 ampicillin resistance (amp) gene. The inserts at this site are palindromic, variable in length, and bracketed by 9- or ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Weston-Hafer K,Berg DE

    更新日期:1989-04-01 00:00:00

  • Unexpected function of the glucanosyltransferase Gas1 in the DNA damage response linked to histone H3 acetyltransferases in Saccharomyces cerevisiae.

    abstract::Chromatin organization and structure are crucial for transcriptional regulation, DNA replication, and damage repair. Although initially characterized in remodeling cell wall glucans, the β-1,3-glucanosyltransferase Gas1 was recently discovered to regulate transcriptional silencing in a manner separable from its activi...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.113.158824

    authors: Eustice M,Pillus L

    更新日期:2014-04-01 00:00:00

  • Use of high and low level overexpression plasmids to test mutant alleles of the recF gene of Escherichia coli K-12 for partial activity.

    abstract::We showed that sufficient overexpression of the wild-type recF gene interfered with three normal cell functions: (1) UV induction of transcription from the LexA-protein-repressed sulA promoter, (2) UV resistance and (3) cell viability at 42 degrees. To show this, we altered a low-level overexpressing recF+ plasmid wit...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Sandler SJ,Clark AJ

    更新日期:1993-11-01 00:00:00

  • Selection at the amino acid level can influence synonymous codon usage: implications for the study of codon adaptation in plastid genes.

    abstract::A previously employed method that uses the composition of noncoding DNA as the basis of a test for selection between synonymous codons in plastid genes is reevaluated. The test requires the assumption that in the absence of selective differences between synonymous codons the composition of silent sites in coding seque...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Morton BR

    更新日期:2001-09-01 00:00:00

  • Testing neutrality in subdivided populations.

    abstract::Statistical tests of the neutrality hypothesis that are based on the sampling theory of Ewens (1972) require the assumption of panmixia. It is proposed that for a population comprising numerous local populations with weak gene flow among them, tests based on Ewens' theory can be applied separately to samples from each...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Slatkin M

    更新日期:1982-03-01 00:00:00

  • Estimation of deleterious genomic mutation parameters in natural populations by accounting for variable mutation effects across loci.

    abstract::The genomes of all organisms are subject to continuous bombardment of deleterious genomic mutations (DGM). Our ability to accurately estimate various parameters of DGM has profound significance in population and evolutionary genetics. The Deng-Lynch method can estimate the parameters of DGM in natural selfing and outc...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Deng HW,Gao G,Li JL

    更新日期:2002-11-01 00:00:00

  • Assessing the relative rate of (mitochondrial) genomic change.

    abstract::I report a framework for assessing whether one mitochondrial genome is significantly more rearranged than another. This relative rate of gene rearrangement test (RGR) behaves according to expectation, distinguishing between highly rearranged and mildly rearranged insect mitochondrial genomes. It may be more broadly ap...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.103.024885

    authors: Dowton M

    更新日期:2004-06-01 00:00:00

  • Lack of underdominance in a naturally occurring pericentric inversion in Drosophila melanogaster and its implications for chromosome evolution.

    abstract::In(2LR)PL is a large pericentric inversion polymorphic in populations of Drosophila melanogaster on two Indian Ocean islands. This polymorphism is puzzling: because crossing over in female heterokaryotypes produces inviable zygotes, such inversions are thought to be underdominant and should be quickly eliminated from ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Coyne JA,Aulard S,Berry A

    更新日期:1991-11-01 00:00:00

  • A heritable structural alteration of the yeast mitochondrion.

    abstract::Prions have revived interest in hereditary change that is due to change in cellular structure. How pervasive is structural inheritance and what are its mechanisms? Described here is the initial characterization of [Leu(P)], a heritable structural change of the mitochondrion of Saccharomyces cerevisiae that often but n...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Lockshon D

    更新日期:2002-08-01 00:00:00

  • Aspects of the ultraviolet photobiology of some T-even bacteriophages.

    abstract::Bacteriophage T4 DNA metabolism is largely insulated from that of its host, although some host functions assist in the repair of T4 DNA damage. Environmental factors sometimes affect survival and mutagenesis after ultraviolet (UV) irradiation of T4, and can affect mutagenesis in many organisms. We therefore tested the...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Smith LA,Drake JW

    更新日期:1998-04-01 00:00:00

  • Evolution of the RECQ family of helicases: A drosophila homolog, Dmblm, is similar to the human bloom syndrome gene.

    abstract::Several eukaryotic homologs of the Escherichia coli RecQ DNA helicase have been found. These include the human BLM gene, whose mutation results in Bloom syndrome, and the human WRN gene, whose mutation leads to Werner syndrome resembling premature aging. We cloned a Drosophila melanogaster homolog of the RECQ helicase...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Kusano K,Berres ME,Engels WR

    更新日期:1999-03-01 00:00:00

  • The hitchhiking effect of an autosomal meiotic drive gene.

    abstract::Transmission-ratio distortion is a departure from a 1:1 segregation of alleles in the gametes of a heterozygous individual. The so-called driving allele is strongly selected regardless of its effect on the fitness of the carrying individual. It may then have an important impact on neutral polymorphism due to the genet...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.105.052977

    authors: Chevin LM,Hospital F

    更新日期:2006-07-01 00:00:00

  • Mosaicism of Solid Gold supports the causality of a noncoding A-to-G transition in the determinism of the callipyge phenotype.

    abstract::To identify the callipyge mutation, we have resequenced 184 kb spanning the DLK1-, GTL2-, PEG11-, and MEG8-imprinted domain and have identified an A-to-G transition in a highly conserved dodecamer motif between DLK1 and GTL2. This was the only difference found between the callipyge (CLPG) allele and a phylogenetically...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Smit M,Segers K,Carrascosa LG,Shay T,Baraldi F,Gyapay G,Snowder G,Georges M,Cockett N,Charlier C

    更新日期:2003-01-01 00:00:00

  • The Evolution of Polymorphic Hybrid Incompatibilities in House Mice.

    abstract::Resolving the mechanistic and genetic bases of reproductive barriers between species is essential to understanding the evolutionary forces that shape speciation. Intrinsic hybrid incompatibilities are often treated as fixed between species, yet there can be considerable variation in the strength of reproductive isolat...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.118.300840

    authors: Larson EL,Vanderpool D,Sarver BAJ,Callahan C,Keeble S,Provencio LL,Kessler MD,Stewart V,Nordquist E,Dean MD,Good JM

    更新日期:2018-07-01 00:00:00

  • The Y chromosome of Drosophila melanogaster exhibits chromosome-wide imprinting.

    abstract::Genomic imprinting is well known as a regulatory property of a few specific chromosomal regions and leads to differential behavior of maternally and paternally inherited alleles. We surveyed the activity of two reporter genes in 23 independent P-element insertions on the heterochromatic Y chromosome of Drosophila mela...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Maggert KA,Golic KG

    更新日期:2002-11-01 00:00:00