De novo DNA methylation at nonrandom founder sites 5' from an unmethylated minimal origin of DNA replication in latent Epstein-Barr virus genomes.

Abstract:

:Latent episomal genomes of Epstein-Barr virus, a human gammaherpesvirus, represent a suitable model system for studying replication and methylation of chromosomal DNA in mammals. We analyzed the methylation patterns of CpG dinucleotides in the latent origin of DNA replication of Epstein-Barr virus using automated fluorescent genomic sequencing of bisulfite-modified DNA samples. We observed that the minimal origin of DNA replication was unmethylated in 8 well-characterized human cell lines or clones carrying latent Epstein-Barr virus genomes as well as in a prototype virus producer marmoset cell line. This observation suggests that unmethylated DNA domains can function as initiation sites or zones of DNA replication in human cells. Furthermore, 5' from this unmethylated region we observed focal points of de novo DNA methylation in nonrandom positions in the majority of Burkitt's lymphoma cell lines and clones studied while the corresponding CpG dinucleotides in viral genomes carried by lymphoblastoid cell lines and marmoset cells were completely unmethylated. Clustering of highly methylated CpG dinucleotides suggests that de novo methylation of unmethylated double-stranded episomal viral genomes starts at discrete founder sites in vivo. This is the first comparative high-resolution methylation analysis of a latent viral origin of DNA replication in human cells.

journal_name

Biol Chem

journal_title

Biological chemistry

authors

Salamon D,Takacs M,Myöhänen S,Marcsek Z,Berencsi G,Minarovits J

doi

10.1515/BC.2000.014

keywords:

subject

Has Abstract

pub_date

2000-02-01 00:00:00

pages

95-105

issue

2

eissn

1431-6730

issn

1437-4315

journal_volume

381

pub_type

杂志文章
  • The human steroid hydroxylases CYP1B1 and CYP11B2.

    abstract::Major advances have been made during the last decade in our understanding of adrenal steroid hormone biosynthesis. Two key players in these pathways are the human mitochondrial cytochrome P450 enzymes CYP11B1 and CYP11B2, which catalyze the final steps in the biosynthesis of cortisol and aldosterone. Using data from m...

    journal_title:Biological chemistry

    pub_type: 杂志文章,评审

    doi:10.1515/BC.2002.174

    authors: Bureik M,Lisurek M,Bernhardt R

    更新日期:2002-10-01 00:00:00

  • Functional mapping of the EcoRV DNA methyltransferase by random mutagenesis and screening for catalytically inactive mutants.

    abstract::M.EcoRV is an alpha-adenine DNA methyltransferase. According to structure predictions, the enzyme consists of a catalytic domain, which has a structure similar to all other DNA-methyltransferases, and a smaller DNA-recognition domain. We have investigated this enzyme by random mutagenesis, using error-prone PCR, follo...

    journal_title:Biological chemistry

    pub_type: 杂志文章

    doi:10.1515/bchm.1998.379.4-5.475

    authors: Friedrich T,Roth M,Helm-Kruse S,Jeltsch A

    更新日期:1998-04-01 00:00:00

  • Changes of the peripheral blood mononuclear cells membrane fluidity from type 1 Gaucher disease patients: an electron paramagnetic resonance study.

    abstract::Gaucher disease (GD) is a lysosomal storage disorder, caused by an impaired function of β-glucocerebrosidase, which results in accumulation of glucocerebroside in cells, and altered membrane ordering. Using electron paramagnetic resonance spin labeling, a statistically significant difference in the order parameter bet...

    journal_title:Biological chemistry

    pub_type: 杂志文章

    doi:10.1515/hsz-2017-0241

    authors: Pavićević A,Lakočević M,Popović M,Popović-Bijelić A,Daković M,Mojović M

    更新日期:2018-04-25 00:00:00

  • Self-organization versus Watchmaker: stochastic dynamics of cellular organization.

    abstract::The cell, as a molecular system, is often interpreted in terms of complex clockworks, and the design charts of mechanical and electrical engineering are assumed to provide adequate approximations for the description of cellular organization. However, a growing body of experimental evidence obtained through the observa...

    journal_title:Biological chemistry

    pub_type: 杂志文章,评审

    doi:10.1515/BC.2005.030

    authors: Kurakin A

    更新日期:2005-03-01 00:00:00

  • Structural and mechanistic aspects of S-S bonds in the thioredoxin-like family of proteins.

    abstract::Disulfide bonds play a critical role in a variety of structural and mechanistic processes associated with proteins inside the cells and in the extracellular environment. The thioredoxin family of proteins like thioredoxin (Trx), glutaredoxin (Grx) and protein disulfide isomerase, are involved in the formation, transfe...

    journal_title:Biological chemistry

    pub_type: 杂志文章,评审

    doi:10.1515/hsz-2018-0319

    authors: Sousa SF,Neves RPP,Waheed SO,Fernandes PA,Ramos MJ

    更新日期:2019-04-24 00:00:00

  • Activation of GPR119 by fatty acid agonists augments insulin release from clonal β-cells and isolated pancreatic islets and improves glucose tolerance in mice.

    abstract::G-protein coupled receptor 119 (GPR119) is emerging as a potential target for the treatment of type 2 diabetes with beneficial effects on glucose homeostasis. This study assessed the insulin-secreting properties of various GPR119 agonists and the distribution of GPR119 in pancreatic islets. Endogenous ligands [oleoyle...

    journal_title:Biological chemistry

    pub_type: 杂志文章

    doi:10.1515/hsz-2013-0255

    authors: Moran BM,Abdel-Wahab YH,Flatt PR,McKillop AM

    更新日期:2014-04-01 00:00:00

  • Common therapeutic strategies for prion and Alzheimer's diseases.

    abstract::A number of unexpected pathophysiological connections linking different neurodegenerative diseases have emerged over the past decade. An example is provided by prion and Alzheimer's diseases. Despite being distinct pathologies, these disorders share several neurotoxic mechanisms, including accumulation of misfolded pr...

    journal_title:Biological chemistry

    pub_type: 杂志文章,评审

    doi:10.1515/hsz-2016-0190

    authors: Elezgarai SR,Biasini E

    更新日期:2016-11-01 00:00:00

  • Efficient production of native actin upon translation in a bacterial lysate supplemented with the eukaryotic chaperonin TRiC.

    abstract::Recombinant expression of actin in bacteria results in non-native species that aggregate into inclusion bodies. Actin is a folding substrate of TRiC, the chaperonin of the eukaryotic cytosol. By employing bacterial in vitro translation lysates supplemented with purified chaperones, we have found that TRiC is the only ...

    journal_title:Biological chemistry

    pub_type: 杂志文章

    doi:10.1515/BC.2005.088

    authors: Stemp MJ,Guha S,Hartl FU,Barral JM

    更新日期:2005-08-01 00:00:00

  • six-banded, a novel Drosophila gene, is expressed in 6 segmental stripes during embryonic development and in the eye imaginal disc.

    abstract::We have characterised a Drosophila P-element enhancer detector insertion F125, which is expressed in the embryonic head and CNS as well as in various third instar imaginal discs. In an attempt to identify the gene with the equivalent expression pattern, we have characterised an adjacent gene. It encodes two novel conc...

    journal_title:Biological chemistry

    pub_type: 杂志文章

    doi:10.1515/bchm.1997.378.10.1119

    authors: Zeidler MP,Mlodzik M

    更新日期:1997-10-01 00:00:00

  • The production and characterization of artificial heterodimers of the restriction endonuclease EcoRV.

    abstract::A novel approach to studying the inter- and intrasubunit communication required for the activity of homodimeric proteins is described. It was developed for the restriction endonuclease EcoRV, but should also be useful for other homodimeric enzymes. Two ecorV genes encoding different EcoRV mutants are coexpressed in th...

    journal_title:Biological chemistry

    pub_type: 杂志文章

    doi:10.1515/bchm3.1996.377.10.625

    authors: Wende W,Stahl F,Pingoud A

    更新日期:1996-10-01 00:00:00

  • [18O]-labeled singlet oxygen as a tool for mechanistic studies of 8-oxo-7,8-dihydroguanine oxidative damage: detection of spiroiminodihydantoin, imidazolone and oxazolone derivatives.

    abstract::A water-soluble [18O]-labeled endoperoxide derived from N,N'-di(2,3-dihydroxypropyl)-1,4-naphthalene-dipropanamide (DHPN18O2) has been shown to act as a clean chemical source of [18O]-labeled molecular singlet oxygen. This allows the assessment of the singlet oxygen (1O2) reactivity toward biological targets such as D...

    journal_title:Biological chemistry

    pub_type: 杂志文章

    doi:10.1515/BC.2002.063

    authors: Martinez GR,Medeiros MH,Ravanat JL,Cadet J,Di Mascio P

    更新日期:2002-03-01 00:00:00

  • Effects of short-term chemical ablation of the GIP receptor on insulin secretion, islet morphology and glucose homeostasis in mice.

    abstract::Glucose-dependent insulinotropic polypeptide (GIP) is an incretin hormone secreted by endocrine K-cells in response to nutrient absorption. In this study we have utilized a specific and enzymatically stable GIP receptor antagonist, (Pro3)GIP, to evaluate the contribution of endogenous GIP to insulin secretion and gluc...

    journal_title:Biological chemistry

    pub_type: 杂志文章

    doi:10.1515/BC.2004.110

    authors: Irwin N,Gault VA,Green BD,Greer B,McCluskey JT,Harriott P,O'Harte FP,Flatt PR

    更新日期:2004-09-01 00:00:00

  • Synthetic biology of B cell activation: understanding signal amplification at the B cell antigen receptor using a rebuilding approach.

    abstract::Upon activation of the B cell antigen receptor (BCR), the spleen tyrosine kinase (Syk) and the Src family kinase Lyn phosphorylate tyrosines of the immunoreceptor tyrosine-based activation motif (ITAM) of Igα and Igβ which further serve as binding sites for the SH2 domains of these kinases. Using a synthetic biology a...

    journal_title:Biological chemistry

    pub_type: 杂志文章

    doi:10.1515/hsz-2018-0308

    authors: Kulathu Y,Zuern C,Yang J,Reth M

    更新日期:2019-03-26 00:00:00

  • Phosphorylase and the origin of reversible protein phosphorylation.

    abstract::This article presents a historical account of the discovery of reversible protein phosphorylation. The process was uncovered in the mid-1950s in a study designed to elucidate the complex hormonal regulation of skeletal muscle glycogen phosphorylase. This enzyme was originally thought to be regulated by AMP now known t...

    journal_title:Biological chemistry

    pub_type: 杂志文章

    doi:10.1515/BC.2010.011

    authors: Fischer EH

    更新日期:2010-02-01 00:00:00

  • Mechanistic insights in light-induced cAMP production by photoactivated adenylyl cyclase alpha (PACalpha).

    abstract::The flagellate Euglena gracilis contains as photoreceptor complex a heterotetrameric light-sensitive adenylyl cyclase (AC), consisting of the flavoproteins PACalpha and PACbeta. Previously, we demonstrated the functional expression of PACalpha and PACbeta in oocytes from Xenopus laevis and of PACalpha in different ani...

    journal_title:Biological chemistry

    pub_type: 杂志文章

    doi:10.1515/BC.2009.132

    authors: Looser J,Schröder-Lang S,Hegemann P,Nagel G

    更新日期:2009-11-01 00:00:00

  • Glycine-assisted enhancement of 1,4-beta-d-xylan xylanohydrolase activity at alkaline pH with a pH optimum shift.

    abstract::This is the first report describing the enhancement of xylanase activity by the neutral amino acid glycine. Xylanase activity is increased seven-fold at alkaline pH in the presence of glycine and its pH optimum is shifted from pH 7 to 8 without using any protein engineering techniques. Analysis of the steady-state kin...

    journal_title:Biological chemistry

    pub_type: 杂志文章

    doi:10.1515/BC.2007.007

    authors: Vathipadiekal V,Verma A,Rao M

    更新日期:2007-01-01 00:00:00

  • Characterization of the nuclear import mechanisms of HSV-1 UL31.

    abstract::As an important protein, UL31 has been demonstrated to play multiple roles in herpes simplex virus 1 (HSV-1) replication. Previous studies showed that UL31 predominantly locates in the nucleus in chemical fixed cells and live cells, however, the determining mechanisms for its nuclear translocation is not clear. In the...

    journal_title:Biological chemistry

    pub_type: 杂志文章

    doi:10.1515/hsz-2015-0299

    authors: Cai M,Si J,Li X,Zeng Z,Li M

    更新日期:2016-06-01 00:00:00

  • DNA-binding specificity of PAR and C/EBP leucine zipper proteins: a single amino acid substitution in the C/EBP DNA-binding domain confers PAR-like specificity to C/EBP.

    abstract::PAR and C/EBP family proteins are liver-enriched basic leucine zipper (bZip) transcription factors that bind similar sites on the promoters of albumin and cholesterol 7 alpha hydroxylase genes. However, C/EBP proteins have a more relaxed binding specificity than PAR proteins, in that they recognize many sites within p...

    journal_title:Biological chemistry

    pub_type: 杂志文章

    doi:

    authors: Falvey E,Marcacci L,Schibler U

    更新日期:1996-12-01 00:00:00

  • Renal gene expression profiling using kinin B1 and B2 receptor knockout mice reveals comparable modulation of functionally related genes.

    abstract::The kinin B2 receptor, which is constitutively expressed in a large number of tissues, mediates most of the known effects of bradykinin (BK). Normally undetectable in healthy tissues, the B1 receptor is strongly over-expressed under pathological conditions. BK is an important mediator in renal homeostasis and is mainl...

    journal_title:Biological chemistry

    pub_type: 杂志文章

    doi:10.1515/BC.2006.004

    authors: Bachvarov D,Bachvarova M,Koumangaye R,Klein J,Pesquero JB,Neau E,Bader M,Schanstra JP,Bascands JL

    更新日期:2006-01-01 00:00:00

  • Assembly and function of small RNA - argonaute protein complexes.

    abstract::Small RNAs such as microRNAs (miRNAs), short interfering RNAs (siRNAs) or Piwi-interacting RNAs (piRNAs) are important regulators of gene expression in various organisms. Small RNAs bind to a member of the Argonaute protein family and are incorporated into larger structures that mediate diverse gene silencing events. ...

    journal_title:Biological chemistry

    pub_type: 杂志文章,评审

    doi:10.1515/hsz-2014-0116

    authors: Dueck A,Meister G

    更新日期:2014-06-01 00:00:00

  • Annexins in plasma membrane repair.

    abstract::Disruption of the plasma membrane poses deadly threat to eukaryotic cells and survival requires a rapid membrane repair system. Recent evidence reveal various plasma membrane repair mechanisms, which are required for cells to cope with membrane lesions including membrane fusion and replacement strategies, remodeling o...

    journal_title:Biological chemistry

    pub_type: 杂志文章,评审

    doi:10.1515/hsz-2016-0171

    authors: Boye TL,Nylandsted J

    更新日期:2016-10-01 00:00:00

  • Redefining proteostasis transcription factors in organismal stress responses, development, metabolism, and health.

    abstract::Eukaryotic organisms have evolved complex and robust cellular stress response pathways to ensure maintenance of proteostasis and survival during fluctuating environmental conditions. Highly conserved stress response pathways can be triggered and coordinated at the cell-autonomous and cell-nonautonomous level by proteo...

    journal_title:Biological chemistry

    pub_type: 杂志文章,评审

    doi:10.1515/hsz-2019-0385

    authors: Jones LM,Chen Y,van Oosten-Hawle P

    更新日期:2020-08-27 00:00:00

  • Novel approach to quorum quenching: rational design of antibacterials in combination with hexahistidine-tagged organophosphorus hydrolase.

    abstract::N-acyl homoserine lactones (AHLs) are quorum sensing (QS) signal molecules used by most Gram-negative pathogenic bacteria. In this article the lactonase activity of the preparations based on hexahistidine-tagged organophosphorus hydrolase (His6-OPH) towards AHLs was studied. Initially, three of the most interesting β-...

    journal_title:Biological chemistry

    pub_type: 杂志文章

    doi:10.1515/hsz-2018-0162

    authors: Aslanli A,Lyagin I,Efremenko E

    更新日期:2018-07-26 00:00:00

  • The T-knot motif revisited.

    abstract::The T-knot scaffold, a disulphide-reinforced structural motif shared by several proteins with very different biological functions, has been defined as 'a stretch of the protein chain which comprises two strands of a beta-sheet and three loops, knotted by two disulphides into the shape of the letter T'. In this communi...

    journal_title:Biological chemistry

    pub_type: 杂志文章

    doi:10.1515/BC.1999.159

    authors: Polticelli F,Pascarella S,Bordo D,Bolognesi M,Ascenzi P

    更新日期:1999-10-01 00:00:00

  • Calpain function in the differentiation of mesenchymal stem cells.

    abstract::Calpain is a calcium-activated non lysosomal neutral thiol protease (EC 3.4.22.17) present in a wide variety of eukaryotic cells. Calpain is usually present as an inactive form and is activated by calcium ions and phospholipids. The ability of calpain to alter, by limited proteolysis, the activity or function of numer...

    journal_title:Biological chemistry

    pub_type: 杂志文章,评审

    doi:10.1515/BC.2002.079

    authors: Yajima Y,Kawashima S

    更新日期:2002-05-01 00:00:00

  • Characterization of the subcellular localization and nuclear import molecular mechanisms of herpes simplex virus 1 UL2.

    abstract::As a crucial protein, the herpes simplex virus 1 (HSV-1) UL2 protein has been shown to take part in various stages of viral infection, nonetheless, its exact subcellular localization and transport molecular determinants are not well known thus far. In the present study, by using live cells fluorescent microscopy assay...

    journal_title:Biological chemistry

    pub_type: 杂志文章

    doi:10.1515/hsz-2016-0268

    authors: Cai M,Huang Z,Liao Z,Chen T,Wang P,Jiang S,Chen D,Peng T,Bian Y,Hong G,Yang H,Zeng Z,Li X,Li M

    更新日期:2017-04-01 00:00:00

  • Synthetic peptides and fluorogenic substrates related to the reactive site sequence of Kunitz-type inhibitors isolated from Bauhinia: interaction with human plasma kallikrein.

    abstract::We have previously described Kunitz-type serine proteinase inhibitors purified from Bauhinia seeds. Human plasma kallikrein shows different susceptibility to those inhibitors. In this communication, we describe the interaction of human plasma kallikrein with fluorogenic and non-fluorogenic peptides based on the Bauhin...

    journal_title:Biological chemistry

    pub_type: 杂志文章

    doi:10.1515/BC.2001.016

    authors: Oliva ML,Santomauro-Vaz EM,Andrade SA,Juliano MA,Pott VJ,Sampaio MU,Sampaio CA

    更新日期:2001-01-01 00:00:00

  • A nucleosome-free dG-dC-rich sequence element promotes constitutive transcription of the essential yeast RIO1 gene.

    abstract::RIO1 is an essential gene that encodes a protein serine kinase and is transcribed constitutively at a very low level. Transcriptional activation of RIO1 dispenses with a canonical TATA box as well as with classical transactivators or specific DNA-binding factors. Instead, a dG-dC-rich sequence element, that is located...

    journal_title:Biological chemistry

    pub_type: 杂志文章

    doi:10.1515/BC.2003.143

    authors: Angermayr M,Schwerdffeger K,Bandlow W

    更新日期:2003-09-01 00:00:00

  • Defects of corneocyte structural proteins and epidermal barrier in atopic dermatitis.

    abstract::The main function of the epidermis is to establish a vital multifunctional barrier between the body and its external environment. A defective epidermal barrier is one of the key features of atopic dermatitis (AD), a chronic and relapsing inflammatory skin disorder that affects up to 20% of children and 2-3% of adults ...

    journal_title:Biological chemistry

    pub_type: 杂志文章,评审

    doi:10.1515/hsz-2015-0141

    authors: Le Lamer M,Pellerin L,Reynier M,Cau L,Pendaries V,Leprince C,Méchin MC,Serre G,Paul C,Simon M

    更新日期:2015-11-01 00:00:00

  • Processive proteolysis by γ-secretase and the mechanism of Alzheimer's disease.

    abstract::γ-Secretase is a membrane-embedded protease complex with presenilin as the catalytic component. Cleavage within the transmembrane domain of the amyloid β-protein precursor (APP) by γ-secretase produces the C-terminus of the amyloid β-peptide (Aβ), a proteolytic product prone to aggregation and strongly linked to Alzhe...

    journal_title:Biological chemistry

    pub_type: 杂志文章,评审

    doi:10.1515/hsz-2012-0140

    authors: Wolfe MS

    更新日期:2012-09-01 00:00:00