Four ubiquitously expressed genes, RD (D6S45)-SKI2W (SKIV2L)-DOM3Z-RP1 (D6S60E), are present between complement component genes factor B and C4 in the class III region of the HLA.

Abstract:

:The association of the HLA class III region with many diseases motivates the investigation of unidentified genes in the 30-kb segment between complement component genes Bf and C4. RD, which codes for a putative RNA binding protein, is 205 bp downstream of Bf. SKI2W (HGMW-approved symbol SKIV2L), a DEVH-box gene probably involved in RNA turnover, is 171 bp downstream of RD (HGMW-approved symbol D6S45). RP1 (HGMW-approved symbol D6S60E) is located 611 bp upstream of C4. The DNA sequence between human RD and RP1 was determined and the exon-intron structure of SKI2W elucidated. SKI2W consists of 28 exons. The putative RNA helicase domain of Ski2w is encoded by 9 exons. Further analysis of the 2.5-kb intergenic sequence between SKI2W and RP1 led to the discovery of DOM3Z. The full-length cDNA sequence of DOM3Z encodes 396 amino acids with a leucine zipper motif. Dom3z-related proteins are present in simple and complex eukaryotes. In Caenorhabditis elegans, Dom3z-related protein could be involved in the development of germ cells. Human RD-SKI2W and DOM3Z-RP1 are arranged as two head-to-head oriented gene pairs with unmethylated CpG sequences at the common 5' regulatory region of each gene pair. The ubiquitous expression pattern suggests that these four genes are probably housekeeping genes.

journal_name

Genomics

journal_title

Genomics

authors

Yang Z,Shen L,Dangel AW,Wu LC,Yu CY

doi

10.1006/geno.1998.5499

subject

Has Abstract

pub_date

1998-11-01 00:00:00

pages

338-47

issue

3

eissn

0888-7543

issn

1089-8646

pii

S0888-7543(98)95499-4

journal_volume

53

pub_type

杂志文章

相关文献

GENOMICS文献大全
  • Elucidation of the minimal sequence required to imprint H19 transgenes.

    abstract::The imprinted mouse H19 gene exhibits maternal allele-specific expression and paternal allele-specific hypermethylation. We previously demonstrated that a 14-kb H19 minitransgene possessing 5' differentially methylated sequence recapitulates the endogenous H19 imprinting pattern when present as high-copy arrays. To in...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2001.6514

    authors: Cranston MJ,Spinka TL,Elson DA,Bartolomei MS

    更新日期:2001-04-01 00:00:00

  • Homologies between human and marmoset (Callithrix jacchus) chromosomes revealed by comparative chromosome painting.

    abstract::Regions of DNA homology between human and marmoset (Callithrix jacchus) chromosomes have been demonstrated using fluorescence in situ hybridization. All 24 chromosome paints and two centromere repeat sequences from Homo sapiens (HSA) have been annealed to previously G-banded metaphase spreads of Callithrix jacchus. Al...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.0186

    authors: Sherlock JK,Griffin DK,Delhanty JD,Parrington JM

    更新日期:1996-04-15 00:00:00

  • Cloning and characterization of a novel human clathrin heavy chain gene (CLTCL).

    abstract::An exon representing a novel clathrin heavy chain gene (CLTCL) was isolated during gene identification studies and transcription mapping of human chromosome 22. Isolation and sequencing of cDNA clones corresponding to this exon revealed extensive similarity of the predicted amino acid sequence of this gene product to ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.0386

    authors: Long KR,Trofatter JA,Ramesh V,McCormick MK,Buckler AJ

    更新日期:1996-08-01 00:00:00

  • Relationship of the genes for Chediak-Higashi syndrome (beige) and the T-cell receptor gamma chain in mouse and man.

    abstract::The genetic linkage of Chediak-Higashi syndrome and its murine analog, beige (bg), to the T-cell receptor (TCR-gamma) gamma chain gene is further defined. Previous studies using recombinant inbred strains of mice demonstrated that the murine bg gene is genetically linked to a murine TCR-gamma gene. We report that in t...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(87)90058-9

    authors: Holcombe RF,Strauss W,Owen FL,Boxer LA,Warren RW,Conley ME,Ferrara J,Leavitt RY,Fauci AS,Taylor BA

    更新日期:1987-11-01 00:00:00

  • Refinement of the DNA marker maps of mouse chromosome 12.

    abstract::To refine the linkage map of mouse Chromosome (Chr) 12 and to define better the homology relationships between it and human chrs 2p and 14q, nine new anonymous DNA markers of Chr 12 were identified, and mouse loci homologous to the human D14S17, CHGA, HSPA2, RRM2, TPO, and ZFP50 ("KUP") genes were defined. The inherit...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1994.1234

    authors: Khan F,Clarke V,D'Eustachio P

    更新日期:1994-05-01 00:00:00

  • Pseudomonas putida modulates the expression of miRNAs and their target genes in response to drought and salt stresses in chickpea (Cicer arietinum L.).

    abstract::MicroRNAs are small non-coding regulatory RNA molecules that play an important role in the modulation of gene expression during various environmental stresses. Pseudomonas putida RA, a plant growth promoting rhizobacteria (PGPR) colonizes the root surface of plants improving their growth and development during abiotic...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2018.01.007

    authors: Jatan R,Chauhan PS,Lata C

    更新日期:2019-07-01 00:00:00

  • Identification of a doublet missense substitution in the bovine LRP4 gene as a candidate causal mutation for syndactyly in Holstein cattle.

    abstract::Syndactyly in Holstein cattle is an autosomal recessive abnormality characterized by the fusion of the functional digits. This disorder has been previously mapped to the telomeric part of bovine chromosome 15. Here, we describe the fine-mapping of syndactyly in Holstein cattle to a 3.5-Mb critical interval using a com...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2006.05.007

    authors: Duchesne A,Gautier M,Chadi S,Grohs C,Floriot S,Gallard Y,Caste G,Ducos A,Eggen A

    更新日期:2006-11-01 00:00:00

  • Ancient repeated DNA elements and the regulation of the human frataxin promoter.

    abstract::Friedreich ataxia results from frataxin insufficiency caused by repeat expansion in intron 1 of the frataxin gene. Since the coding sequence is unchanged, the potential exists to ameliorate symptoms by increasing frataxin promoter activity. We therefore defined the minimal frataxin promoter in humans. Despite the fact...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2004.10.013

    authors: Greene E,Entezam A,Kumari D,Usdin K

    更新日期:2005-02-01 00:00:00

  • Mapping of genes for the human C5a receptor (C5AR), human FMLP receptor (FPR), and two FMLP receptor homologue orphan receptors (FPRH1, FPRH2) to chromosome 19.

    abstract::The genes encoding receptors for the chemotactic ligands C5a (C5AR) and FMLP (FPR) were mapped using a panel of somatic cell hybrids to chromosome 19. Because the hybridization pattern on Southern analysis suggested an intron structure or related genes in the case of FPR, genomic clones were characterized. Two structu...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(92)90265-t

    authors: Bao L,Gerard NP,Eddy RL Jr,Shows TB,Gerard C

    更新日期:1992-06-01 00:00:00

  • Physical mapping of a 950-kb region surrounding a locus (D10S102) tightly linked to the MEN2A gene.

    abstract::We have constructed a long-range contig of cosmid and YAC clones around D10S102, a locus that is tightly linked to the gene responsible for multiple endocrine neoplasia type 2A (MEN2A). With D10S102 as a starting point, a 360-kb cosmid contig was constructed by bidirectional genomic walking, and at least six fragments...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(92)90390-e

    authors: Tokino T,Imai T,Tanigami A,Takiguchi S,Nakamura Y

    更新日期:1992-02-01 00:00:00

  • Retroposon compensatory mechanism hypothesis not supported: Zfa knockout mice are fertile.

    abstract::It is hypothesized that autosomal retroposons compensate for the loss of their inactivated essential X-chromosome progenitors during spermatogenesis. Here we test this Retroposon Compensatory Mechanism (RCM) hypothesis using the Zfy gene family. The mouse autosomal retroposon Zfa is expressed in testes at the same dev...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/s0888-7543(03)00155-1

    authors: Banks KG,Johnson KA,Lerner CP,Mahaffey CL,Bronson RT,Simpson EM

    更新日期:2003-09-01 00:00:00

  • An explanation for the phenotypic differences between patients bearing partial deletions of the DMD locus.

    abstract::Deletions giving rise to Duchenne muscular dystrophy (DMD) and the less severe Becker muscular dystrophy (BMD) occur in the same large gene on the short arm of the human X chromosome. We present a molecular mechanism to explain the clinical difference in severity between DMD and BMD patients who bear partial deletions...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(88)90113-9

    authors: Monaco AP,Bertelson CJ,Liechti-Gallati S,Moser H,Kunkel LM

    更新日期:1988-01-01 00:00:00

  • Diversity analysis at MHC class II DQA locus in buffalo (Bubalus bubalis) indicates extensive duplication and trans-species evolution.

    abstract::Variation at MHC Class II-DQA locus in riverine and swamp buffaloes (Bubu) has been explored in this study. Through sequencing of buffalo DQA, 48 nucleotide variants identified from 17 individuals, reporting 42 novel alleles, including one pseudogene. Individual animal displayed two to seven variants, suggesting the p...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.07.041

    authors: Mishra SK,Niranjan SK,Singh R,Kumar P,Kumar SL,Banerjee B,Kataria RS

    更新日期:2020-11-01 00:00:00

  • The human lamin B receptor/sterol reductase multigene family.

    abstract::LBR (lamin B receptor) is an integral protein of the inner nuclear membrane encoded by a gene on human chromosome 1q42.1. LBR has a nucleoplasmic, amino-terminal domain of approximately 200 amino acids followed by a carboxyl-terminal domain similar in sequence to yeast and plant sterol reductases. We have determined t...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5615

    authors: Holmer L,Pezhman A,Worman HJ

    更新日期:1998-12-15 00:00:00

  • Characterization of a human homologue of the Saccharomyces cerevisiae transcription factor spt3 (SUPT3H).

    abstract::Spt3 is a Saccharomyces cerevisiae transcription factor that is required in vivo for the transcription of a number of RNA polymerase II-transcribed genes. We report the cloning of the gene encoding the human homologue of Spt3, SUPT3H, and its initial functional analysis. The human and yeast Spt3 homologues share an ov...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5500

    authors: Yu J,Madison JM,Mundlos S,Winston F,Olsen BR

    更新日期:1998-10-01 00:00:00

  • Identification and characterization of an Xq26-q27 duplication in a family with spina bifida and panhypopituitarism suggests the involvement of two distinct genes.

    abstract::We investigated a family with a duplication, dup(X)q26-q27, that was present in two brothers, their mother, and their maternal grandmother. The brothers carrying the duplication displayed spina bifida and panhypopituitarism, whereas a third healthy brother inherited the normal X chromosome. Preferential inactivation o...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2000.6327

    authors: Hol FA,Schepens MT,van Beersum SE,Redolfi E,Affer M,Vezzoni P,Hamel BC,Karnes PS,Mariman EC,Zucchi I

    更新日期:2000-10-15 00:00:00

  • Waisman syndrome, a human X-linked recessive basal ganglia disorder with mental retardation: localization to Xq27.3-qter.

    abstract::Linkage of the gene responsible for an X-linked early onset parkinsonism disorder with mental retardation (McKusick 311510) to DNA probes that detect restriction fragment length polymorphisms is described. The disease gene is linked to the F8C gene, and to DNA probes detecting polymorphic loci DXS52, DXS15, DXS134, an...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90363-j

    authors: Gregg RG,Metzenberg AB,Hogan K,Sekhon G,Laxova R

    更新日期:1991-04-01 00:00:00

  • CancerEnD: A database of cancer associated enhancers.

    abstract::CancerEnD is an integrated resource developed for annotating 8524 unique expressed enhancers, associated genes, somatic mutations and copy number variations of 8063 cancer samples from 18 cancer types of TCGA. Somatic mutation data was taken from the COSMIC repository. To delineate the relationship of change in copy n...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.04.028

    authors: Kumar R,Lathwal A,Kumar V,Patiyal S,Raghav PK,Raghava GPS

    更新日期:2020-09-01 00:00:00

  • The generation of a library of PCR-analyzed microsatellite variants for genetic mapping of the mouse genome.

    abstract::Forty-three sequences containing simple sequence repeats or microsatellites were generated from an M13 library of total genomic mouse DNA. These sequences were analyzed for size variation using the polymerase chain reaction and gel electrophoresis without the need for radiolabeling. Seventy-two percent of the sequence...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90175-e

    authors: Cornall RJ,Aitman TJ,Hearne CM,Todd JA

    更新日期:1991-08-01 00:00:00

  • Genomic mapping by anchoring random clones: a mathematical analysis.

    abstract::A complete physical map of the DNA of an organism, consisting of overlapping clones spanning the genome, is an extremely useful tool for genomic analysis. Various methods for the construction of such physical maps are available. One approach is to assemble the physical map by "fingerprinting" a large number of random ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90004-x

    authors: Arratia R,Lander ES,Tavaré S,Waterman MS

    更新日期:1991-12-01 00:00:00

  • Core proteome mediated therapeutic target mining and multi-epitope vaccine design for Helicobacter pylori.

    abstract::Helicobacter pylori is a Gram-negative spiral-shaped bacterium that infects half of the human population worldwide and causes chronic inflammation. In the present study, we used the art of computational biology for therapeutic drug targets identification and a multi-epitope vaccine against multi-strains of H. pylori. ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.06.026

    authors: Rahman N,Ajmal A,Ali F,Rastrelli L

    更新日期:2020-09-01 00:00:00

  • Amplification of the E2F1 transcription factor gene in the HEL erythroleukemia cell line.

    abstract::The E2F transcription factor plays an important regulatory role in cell proliferation, mediating the expression of genes whose products are essential for inducing resting cells to enter the cell cycle and synthesize DNA. To investigate the possible involvement of E2F in hematopoietic malignancies, we isolated genomic ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(95)80118-6

    authors: Saito M,Helin K,Valentine MB,Griffith BB,Willman CL,Harlow E,Look AT

    更新日期:1995-01-01 00:00:00

  • Chromosomal mapping of the human Mu class glutathione S-transferases to 1p13.

    abstract::The chromosomal localization of the human Mu class glutathione S-transferase (GST) genes has been complicated by two factors; the total number of genes is unknown and there is a polymorphism that results from the presence or absence of the GSTM1 gene. Three human Mu class glutathione S-transferase isoenzymes, GSTM1, G...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1993.1429

    authors: Ross VL,Board PG,Webb GC

    更新日期:1993-10-01 00:00:00

  • A human chromosome 11 NotI end clone library.

    abstract::A NotI end clone library has been constructed from a human-hamster hybrid cell line containing only human chromosome 11. Fifty-one NotI clones were chosen to characterize the library. The majority of NotI clones hybridize to small 15- to 200-kb fragments and have proven to be valuable for chromosome 11 physical mappin...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1993.1120

    authors: Sanford J,Kim BW,Deaven LL,Jones C,Higgins MJ,Nowak NJ,Shows TB

    更新日期:1993-03-01 00:00:00

  • Mutation identification of the DSPP in a Chinese family with DGI-II and an up-to-date bioinformatic analysis.

    abstract::In this study, through linkage analysis of a four-generation Chinese family with multiple members afflicted with DGI (type II), we identified a novel missense mutation in DSPP. The mutation was located in exon 2 at the second nucleotide position of the last codon and resulted in a substitution of a proline with a leuc...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2012.01.006

    authors: Li D,Du X,Zhang R,Shen B,Huang Y,Valenzuela RK,Wang B,Zhao H,Liu Z,Li J,Xu Z,Gao L,Ma J

    更新日期:2012-04-01 00:00:00

  • Identification of INSL5, a new member of the insulin superfamily.

    abstract::A new member of the insulin gene superfamily (INSL5) was identified by searching EST databases for the presence of the conserved insulin B-chain cysteine motif. Human and murine INSL5 are both polypeptides of 135 amino acids, matching the classical signature of the insulin superfamily. Through the B- and A-chain regio...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1999.5899

    authors: Conklin D,Lofton-Day CE,Haldeman BA,Ching A,Whitmore TE,Lok S,Jaspers S

    更新日期:1999-08-15 00:00:00

  • Polymorphisms in lipogenic genes and milk fatty acid composition in Holstein dairy cattle.

    abstract::Changing bovine milk fatty acid (FA) composition through selection can decrease saturated FA (SFA) consumption, improve human health and provide a means for manipulating processing properties of milk. Our study determined associations between milk FA composition and genes from triacylglycerol (TAG) biosynthesis pathwa...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2014.10.001

    authors: Nafikov RA,Schoonmaker JP,Korn KT,Noack K,Garrick DJ,Koehler KJ,Minick-Bormann J,Reecy JM,Spurlock DE,Beitz DC

    更新日期:2014-12-01 00:00:00

  • Genome multiplication as adaptation to tissue survival: evidence from gene expression in mammalian heart and liver.

    abstract::To elucidate the functional significance of genome multiplication in somatic tissues, we performed a large-scale analysis of ploidy-associated changes in expression of non-tissue-specific (i.e., broadly expressed) genes in the heart and liver of human and mouse (6585 homologous genes were analyzed). These species have...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2006.08.014

    authors: Anatskaya OV,Vinogradov AE

    更新日期:2007-01-01 00:00:00

  • Transcriptome profiling of different developmental stages of corpus luteum during the estrous cycle in pigs.

    abstract::To better understand the molecular basis of corpus luteum (CL) development and function RNA-Seq was utilized to identify differentially expressed genes (DEGs) in porcine CL during different physiological stages of the estrous cycle viz. early (EL), mid (ML), late (LL) and regressed (R) luteal. Stage wise comparisons o...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.12.008

    authors: Bharati J,Mohan NH,Kumar S,Gogoi J,Kumar S,Jose B,Punetha M,Borah S,Kumar A,Sarkar M

    更新日期:2021-01-01 00:00:00

  • Fructose-1,6-bisphosphatase: genetic and physical mapping to human chromosome 9q22.3 and evaluation in non-insulin-dependent diabetes mellitus.

    abstract::PCR primers specific to the human liver fructose-1,6-bisphosphatase (FBP) gene were designed and used to isolate a cosmid clone. Physical mapping of the FBP cosmid by FISH, and genetic mapping of an associated GA repeat polymorphism (PIC = 0.35), located the liver FBP gene to chromosome 9q22.3 with no recombination be...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.1230

    authors: Rothschild CB,Freedman BI,Hodge R,Rao PN,Pettenati MJ,Anderson RA,Akots G,Qadri A,Roh B,Fajans SS

    更新日期:1995-09-01 00:00:00