3' RACE walking along a large cDNA employing tiered suppression PCR.

Abstract:

:Large genes present particular cloning difficulties, especially when expressed at relatively low levels. We describe a novel method, termed 3' rapid amplification of cDNA ends (RACE) walking, for the rapid determination of unknown 3' flanking sequence of a large cDNA. The technique is a derivative of the anchored PCR 5' RACE procedure but includes a specific and limited second-strand cDNA synthesis and a tiered "panhandle" suppression of nonspecific products. The method generated 900 bp of new sequence for the large tammar wallaby ATRY gene in two easy steps, in which standard 3' RACE and PCR-based cDNA library walking proved unsuccessful. This robust approach represents a new tool for isolating unknown sequence under challenging cloning scenarios such as poor library representation, long coding regions, long 3' untranslated regions, and difficult template regions.

journal_name

Biotechniques

journal_title

BioTechniques

authors

Park DJ,Pask AJ,Renfree MB,Graves JA

doi

10.2144/03344st04

subject

Has Abstract

pub_date

2003-04-01 00:00:00

pages

750-2, 754-6

issue

4

eissn

0736-6205

issn

1940-9818

journal_volume

34

pub_type

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