Sequence-tagged NotI sites of human chromosome 21: sequence analysis and mapping.

Abstract:

:We isolated and analyzed 19 NotI site-containing clones specific for human chromosome 21. The overall process consisted of selective isolation of NotI site-containing clones from flow-sorted chromosome 21 libraries, selection of independent clones by their restriction patterns and nucleotide sequences, and assignment of the clones to chromosome 21. Sequence analysis showed that the regions around the NotI sites had features typical of CpG islands, such as extremely high GC content, high-frequency appearance of CpG dinucleotide sequences, and lack of methylation of these CpGs. PCR conditions for these extremely G + C-rich templates were optimized to establish these NotI sites as sequence-tagged sites.

journal_name

Genomics

journal_title

Genomics

authors

Hattori M,Toyoda A,Ichikawa H,Ito T,Ohgusu H,Oishi N,Kano T,Kuhara S,Ohki M,Sakaki Y

doi

10.1006/geno.1993.1280

subject

Has Abstract

pub_date

1993-07-01 00:00:00

pages

39-44

issue

1

eissn

0888-7543

issn

1089-8646

pii

S0888-7543(83)71280-2

journal_volume

17

pub_type

杂志文章

相关文献

GENOMICS文献大全
  • Rapid detection of mitochondrial sequence polymorphisms using multiplex solid-phase fluorescent minisequencing.

    abstract::This work describes a novel method, multiplex solid-phase fluorescent minisequencing, for the simultaneous detection of several point mutations and/or small deletions and insertions. The method is applied to the analysis of mitochondrial DNA polymorphisms for the purposes of individual identification. A database of 15...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.0247

    authors: Tully G,Sullivan KM,Nixon P,Stones RE,Gill P

    更新日期:1996-05-15 00:00:00

  • Chromosomal localization of the human heme oxygenase genes: heme oxygenase-1 (HMOX1) maps to chromosome 22q12 and heme oxygenase-2 (HMOX2) maps to chromosome 16p13.3.

    abstract::Heme oxygenase catalyzes the oxidation of heme to biliverdin, the precursor of the bile pigment bilirubin, and carbon monoxide, a putative neurotransmitter. We have employed polymerase chain reaction and fluorescence in situ hybridization to determine the chromosome localization of the genes coding for the two known h...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1994.1213

    authors: Kutty RK,Kutty G,Rodriguez IR,Chader GJ,Wiggert B

    更新日期:1994-04-01 00:00:00

  • LTW4 protein on mouse chromosome 1 is a member of a family of antioxidant proteins.

    abstract::Based on its map position, polymorphism pattern, and expression in the kidney, the gene encoding liver 20,000-30,000 MW protein 4 (LTW4) can be considered a potential candidate for the Jckm2 modifying locus, which mediates the severity of polycystic kidney disease in the juvenile cystic kidney mouse. Using two-dimensi...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1997.4762

    authors: Iakoubova OA,Pacella LA,Her H,Beier DR

    更新日期:1997-06-15 00:00:00

  • Molecular cloning and chromosomal localization of the ADH7 gene encoding human class IV (sigma) ADH.

    abstract::The ADH7 gene encoding human Class IV (sigma) alcohol dehydrogenase (ADH) was cloned from a Caucasian genomic DNA library and characterized. It has nine exons and eight introns that span about 22 kb, and its intron insertion is identical to that of the other ADH genes (ADH1 to ADH5). The nucleotide sequences of the ex...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.0040

    authors: Yokoyama H,Baraona E,Lieber CS

    更新日期:1996-01-15 00:00:00

  • Decoding complex patterns of genomic rearrangement in hepatocellular carcinoma.

    abstract::Elucidating the molecular basis of hepatocellular carcinoma (HCC) is crucial to developing targeted diagnostics and therapies for this deadly disease. The landscape of somatic genomic rearrangements (GRs), which can lead to oncogenic gene fusions, remains poorly characterized in HCC. We have predicted 4314 GRs includi...

    journal_title:Genomics

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.ygeno.2014.01.003

    authors: Fernandez-Banet J,Lee NP,Chan KT,Gao H,Liu X,Sung WK,Tan W,Fan ST,Poon RT,Li S,Ching K,Rejto PA,Mao M,Kan Z

    更新日期:2014-02-01 00:00:00

  • Comparative analysis of neurological disorders focuses genome-wide search for autism genes.

    abstract::The behaviors of autism overlap with a diverse array of other neurological disorders, suggesting common molecular mechanisms. We conducted a large comparative analysis of the network of genes linked to autism with those of 432 other neurological diseases to circumscribe a multi-disorder subcomponent of autism. We leve...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2008.09.015

    authors: Wall DP,Esteban FJ,Deluca TF,Huyck M,Monaghan T,Velez de Mendizabal N,Goñí J,Kohane IS

    更新日期:2009-02-01 00:00:00

  • Genome-based analysis reveals a novel SNMP group of the Coleoptera and chemosensory receptors in Rhaphuma horsfieldi.

    abstract::Through an exhaustive homology-based approach, coupled with manual efforts, we annotated and characterized 128 sensory neuron membrane proteins (SNMPs) from genomes and transcriptomes of 22 coleopteran species, with 107 novel candidates. Remarkably, we discovered, for the first time, a novel SNMP group, defined as Gro...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.03.005

    authors: Zhao YJ,Li GC,Zhu JY,Liu NY

    更新日期:2020-07-01 00:00:00

  • Increased CNV-region deletions in mild cognitive impairment (MCI) and Alzheimer's disease (AD) subjects in the ADNI sample.

    abstract::We investigated the genome-wide distribution of CNVs in the Alzheimer's disease (AD) Neuroimaging Initiative (ADNI) sample (146 with AD, 313 with Mild Cognitive Impairment (MCI), and 181 controls). Comparison of single CNVs between cases (MCI and AD) and controls shows overrepresentation of large heterozygous deletion...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2013.04.004

    authors: Guffanti G,Torri F,Rasmussen J,Clark AP,Lakatos A,Turner JA,Fallon JH,Saykin AJ,Weiner M,ADNI the Alzheimer's Disease Neuroimaging Initiative.,Vawter MP,Knowles JA,Potkin SG,Macciardi F

    更新日期:2013-08-01 00:00:00

  • A map of nuclear matrix attachment regions within the breast cancer loss-of-heterozygosity region on human chromosome 16q22.1.

    abstract::There is abundant evidence that the DNA in eukaryotic cells is organized into loop domains that represent basic structural and functional units of chromatin packaging. To explore the DNA domain organization of the breast cancer loss-of-heterozygosity region on human chromosome 16q22.1, we have identified a significant...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2006.11.003

    authors: Shaposhnikov SA,Akopov SB,Chernov IP,Thomsen PD,Joergensen C,Collins AR,Frengen E,Nikolaev LG

    更新日期:2007-03-01 00:00:00

  • Dysregulation in the expression of (lncRNA-TSIX, TP53INP2 mRNA, miRNA-1283) in spinal cord injury.

    abstract:AIM:The objective of this study is to examine the alterations in the levels of expression of serum lncRNA-TSIX, TP53INP2 mRNA, miRNA-1283 in spinal cord injured (SCI) patients versus healthy control. METHOD:The expression of the selected RNAs in the sera was determined in 23 patients suffering from acute spinal cord i...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.06.018

    authors: Salah SMM,Matboli M,Nasser HE,Abdelnaiem IA,Shafei AE,El-Asmer MF

    更新日期:2020-09-01 00:00:00

  • Isolation and chromosomal localization of a novel FMS-like tyrosine kinase gene.

    abstract::We have isolated and sequenced part of a new gene of the tyrosine kinase family. This gene, called FLT3, has strong sequence similarities with members of a group of genes encoding growth factor receptors: FMS, KIT, and PDGFR. We have localized the human FLT3 gene to chromosome 13, band q12, and its mouse homolog to ch...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90270-o

    authors: Rosnet O,Matteï MG,Marchetto S,Birnbaum D

    更新日期:1991-02-01 00:00:00

  • The HNF-3 gene family of transcription factors in mice: gene structure, cDNA sequence, and mRNA distribution.

    abstract::The rat HNF-3 (hepatocyte nuclear factor 3) gene family encodes three transcription factors known to be important in the regulation of gene expression in liver and lung. We have cloned and characterized the mouse genes and cDNAs for HNF-3 alpha, beta, and gamma and analyzed their expression patterns in various adult t...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1994.1191

    authors: Kaestner KH,Hiemisch H,Luckow B,Schütz G

    更新日期:1994-04-01 00:00:00

  • Genome organization and polymorphism of the murine beta-glucuronidase region.

    abstract::Thirty-eight kilobases of mouse genomic DNA which surround and include the coding sequences for beta-glucuronidase has been mapped. Intron-exon arrangements were determined by hybridization of genomic sequences with cDNA clones, and minimum estimates of gene length (11-17 kb) and intron number were obtained. Only a si...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(88)90105-x

    authors: Moore KJ,Paigen K

    更新日期:1988-01-01 00:00:00

  • Construction and characterization of a bovine bacterial artificial chromosome library.

    abstract::A bacterial artificial chromosome (BAC) library has been constructed for use in bovine genome mapping using constructed for use in bovine genome mapping using the pBeloBAC11 vector. Currently, the library consists of 23,040 clones, which achieves a 70% probability (P=0.70) of the library containing a specific unique D...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.9986

    authors: Cai L,Taylor JF,Wing RA,Gallagher DS,Woo SS,Davis SK

    更新日期:1995-09-20 00:00:00

  • Isolation and fine mapping of 16 novel human zinc finger-encoding cDNAs identify putative candidate genes for developmental and malignant disorders.

    abstract::We have isolated and chromosomally fine-mapped 16 novel genes belonging to the human zinc finger Krüppel family (ZNF131-140, 142, 143, 148, 151, 154, and 155), including 1 of the GLI type (ZNF143) and 3 containing a KRAB (Krüppel-associated box) segment (ZNF133, 136, and 140). Based on their map position, several of t...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.1040

    authors: Tommerup N,Vissing H

    更新日期:1995-05-20 00:00:00

  • Imprinted control regions include composite DNA elements consisting of the ZFP57 binding site overlapping MLL1 morphemes.

    abstract::Mammalian genomes include DNA segments that are imprinted (CpG-methylated) only on one of the two parental chromosomes, leading to parent-of-origin-specific gene expression. The process is regulated by Imprinting Control Regions (ICRs) and germline Differentially Methylated Regions (gDMRs). Previously, ZFP57 was shown...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2017.04.008

    authors: Bina M

    更新日期:2017-07-01 00:00:00

  • Comparative radiation hybrid map of canine chromosome 1 incorporating SNP and indel polymorphisms.

    abstract::We report a comparative map of canine chromosome 1 (CFA1) incorporating single nucleotide polymorphisms (SNPs) and insertion/deletion (indel) polymorphisms, developed by using cross-species primers, radiation hybrid analysis, and pool-and-sequence identification of genetic variations. Fifty-five genes were chosen with...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2004.04.001

    authors: Housley DJ,Ritzert E,Venta PJ

    更新日期:2004-08-01 00:00:00

  • The DNF15S2 locus at 3p21 is transcribed in normal lung and small cell lung cancer.

    abstract::Small cell lung cancer (SCLC) has been associated with a deletion of the short arm of chromosome 3. One SCLC cell line, H748, has an interstitial deletion of chromosome 3p and shows allele loss for the DNF15S2 locus detected by the probe lambda H3. Conservation of DNF15S2 sequences in mouse indicated that this human g...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(89)90342-x

    authors: Naylor SL,Marshall A,Hensel C,Martinez PF,Holley B,Sakaguchi AY

    更新日期:1989-04-01 00:00:00

  • Genomic characterization, localization, and functional expression of FGL2, the human gene encoding fibroleukin: a novel human procoagulant.

    abstract::For diseases in which thrombosis plays a pivotal role, such as virus-induced fulminant hepatitis, fetal loss syndrome, and xenograft rejection, the major procoagulant has remained elusive. Here we describe the isolation and functional expression of a distinct human prothrombinase, termed FGL2. The murine fgl2 gene pro...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2000.6444

    authors: Yuwaraj S,Ding J,Liu M,Marsden PA,Levy GA

    更新日期:2001-02-01 00:00:00

  • miRNA biomarkers for predicting overall survival outcomes for head and neck squamous cell carcinoma.

    abstract::Head and neck squamous cell carcinoma (HNSCC) is a malignant tumor of the upper aerodigestive tract. The loss and gain of miRNA function promote cancer development through various mechanisms. RNA sequencing (RNA-seq) and miRNAs sequencing data from the Cancer Genome Atlas (TCGA) was used to show the dysfunctional miRN...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.12.002

    authors: Wu ZH,Zhong Y,Zhou T,Xiao HJ

    更新日期:2021-01-01 00:00:00

  • Yeast artificial chromosome cloning of 3.2 megabases within chromosomal band 11q24 closely linking c-ets 1 and Fli-1 and encompassing the Ewing sarcoma breakpoint.

    abstract::Human chromosome 11 harbors many genes of medical significance and cancer-related rearrangements. The availability of cloned DNA in cosmids and in yeast artificial chromosomes (YACs), combined with fluorescence in situ hybridization analysis, has led to the cloning of genes at sites of chromosomal breakpoints in acute...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1994.1354

    authors: Selleri L,Giovannini M,Hermanson GG,Romo A,Quackenbush J,Penny L,Khristich JV,Evans GA

    更新日期:1994-07-01 00:00:00

  • Polycystin-1L2 is a novel G-protein-binding protein.

    abstract::Mutations in genes encoding polycystin-1 (PC1) and polycystin-2 cause autosomal dominant polycystic kidney disease. The polycystin protein family is composed of Ca2+-permeable pore-forming subunits and receptor-like integral membrane proteins. Here we describe a novel member of the polycystin-1-like subfamily, polycys...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2004.02.008

    authors: Yuasa T,Takakura A,Denker BM,Venugopal B,Zhou J

    更新日期:2004-07-01 00:00:00

  • Plant-pathogen interactions: MicroRNA-mediated trans-kingdom gene regulation in fungi and their host plants.

    abstract::MicroRNAs (miRNAs) have been prevalently studied in plants, animals, and viruses. However, recent studies show evidences of miRNA-like RNAs (milRNAs) in fungi as well. It is known that after successful infection, pathogens hijack the host machinery and use it for their own growth and multiplication. Alternatively, res...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.05.021

    authors: Mathur M,Nair A,Kadoo N

    更新日期:2020-09-01 00:00:00

  • Complete structure of the human Gc gene: differences and similarities between members of the albumin gene family.

    abstract::The sequence of the human Gc gene, including 4228 base pairs of the 5'-flanking region and 8514 base pairs of the 3' flanking region (55,136 in total), was determined from five overlapping lambda phage clones. The sequence spans 42,394 base pairs from the cap site to the polyadenylation site, and it reveals that the g...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1993.1258

    authors: Witke WF,Gibbs PE,Zielinski R,Yang F,Bowman BH,Dugaiczyk A

    更新日期:1993-06-01 00:00:00

  • A novel ribosomal S6-kinase (RSK4; RPS6KA6) is commonly deleted in patients with complex X-linked mental retardation.

    abstract::Large deletions in Xq21 often are associated with contiguous gene syndromes consisting of X-linked deafness type 3 (DFN3), mental retardation (MRX), and choroideremia (CHM). The identification of deletions associated with classic CHM or DFN3 facilitated the positional cloning of the underlying genes, REP-1 and POU3F4,...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1999.6004

    authors: Yntema HG,van den Helm B,Kissing J,van Duijnhoven G,Poppelaars F,Chelly J,Moraine C,Fryns JP,Hamel BC,Heilbronner H,Pander HJ,Brunner HG,Ropers HH,Cremers FP,van Bokhoven H

    更新日期:1999-12-15 00:00:00

  • Genomic structure and chromosomal localization of GML (GPI-anchored molecule-like protein), a gene induced by p53.

    abstract::Among its known functions, tumor suppressor gene p53 serves as a transcriptional regulator and mediates various signals through activation of downstream genes. We recently identified a novel gene, GML (glycosylphosphatidylinositol (GPI)-anchored molecule-like protein), whose expression is specifically induced by wildt...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1997.4680

    authors: Kimura Y,Furuhata T,Urano T,Hirata K,Nakamura Y,Tokino T

    更新日期:1997-05-01 00:00:00

  • Chromosomal mapping of five mouse G protein gamma subunits.

    abstract::Heterotrimeric G proteins, composed of alpha, beta, and gamma subunits, transduce signals from transmembrane receptors to a wide range of intracellular effectors. The G protein gamma subunits, which play an indispensible role in this communication, constitute a large and diverse multigene family. Using an interspecifi...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1999.5763

    authors: Downes GB,Gilbert DJ,Copeland NG,Gautam N,Jenkins NA

    更新日期:1999-04-01 00:00:00

  • Structural organization and complete nucleotide sequence of the gene encoding human acid sphingomyelinase (SMPD1).

    abstract::Acid sphingomyelinase (ASM; HGMW-approved symbol, SMPD1) is the lysosomal phosphodiesterase that hydrolyzes sphingomyelin to ceramide and phosphocholine. The deficient activity of this enzyme results in Types A and B Niemann-Pick disease (NPD). The full-length cDNA encoding human ASM has been isolated and characterize...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(92)90366-z

    authors: Schuchman EH,Levran O,Pereira LV,Desnick RJ

    更新日期:1992-02-01 00:00:00

  • A comparative transcriptional map of a region of 250 kb on the human and mouse X chromosome between the G6PD and the FLN1 genes.

    abstract::The transcriptional organization of the region of the mouse X chromosome between the G6pd and the Fln1 genes was studied in detail, and it was compared with the syntenic region of the human chromosome. A cosmid contig of 250 kb was constructed by screening mouse cosmid libraries with probes for human genes and with wh...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.1164

    authors: Rivella S,Tamanini F,Bione S,Mancini M,Herman G,Chatterjee A,Maestrini E,Toniolo D

    更新日期:1995-08-10 00:00:00

  • Linkage map of nine loci defined by polymorphic DNA markers assigned to rat chromosome 13.

    abstract::A genetic map of nine loci defined by polymorphic DNA markers was created using a single cross of F344/N and LEW/N rats. The markers contained polymorphic simple sequence repeats identified in five genes, renin (Ren), cardiac troponin T (Tnnt3), synaptotagmin (Syt2), Na+,K(+)-ATPase catalytic subunit (Atp1a2), and the...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1993.1466

    authors: Remmers EF,Goldmuntz EA,Zha H,Mathern P,Du Y,Crofford LJ,Wilder RL

    更新日期:1993-11-01 00:00:00