当前位置： SCI文献检索 > GENOMICS期刊下所有文献 > Genome-based analysis reveals a novel SNMP group of the Coleoptera and chemosensory receptors in Rhaphuma horsfieldi.

Genome-based analysis reveals a novel SNMP group of the Coleoptera and chemosensory receptors in Rhaphuma horsfieldi.

Abstract：

:Through an exhaustive homology-based approach, coupled with manual efforts, we annotated and characterized 128 sensory neuron membrane proteins (SNMPs) from genomes and transcriptomes of 22 coleopteran species, with 107 novel candidates. Remarkably, we discovered, for the first time, a novel SNMP group, defined as Group 4 based on the phylogeny, sequence characteristics, gene structure and organization. The lineage-specific expansions in SNMPs occurred mainly in the family Scarabaeidae, harboring 12 representatives in Onthophagus taurus as a typical gene duplication and the most massive set of SNMPs in insects to date. Transcriptome sequencing of Rhaphuma horsfieldi resulted in the yields of approximately 611.9 million clean reads that were further assembled into 543,841 transcripts and 327,550 unigenes, respectively. From the transcriptome, 177 transcripts encoding 84 odorant (ORs), 62 gustatory (GRs), 20 ionotropic (IRs), and 11 ionotropic glutamate (iGluRs) receptors were identified. Phylogenetic analysis classified RhorORs into six groups, RhorGRs into four subfamilies, and RhorIRs into 10 conserved antennal IRs and one divergent IRs. Expression profiles revealed that over 80% of chemosensory genes were specifically or highly transcribed in antennae or tarsi, suggestive of their olfactory and/or gustatory roles. This study has greatly complemented the resources for chemosensory genes in the cerambycid beetles, and most importantly, identifies a novel group of SNMPs in Coleoptera.

journal_name

Genomics

journal_title

Genomics

authors

Zhao YJ,Li GC,Zhu JY,Liu NY

doi

10.1016/j.ygeno.2020.03.005

subject

Has Abstract

pub_date

2020-07-01 00:00:00

pages

2713-2728

issue

4

eissn

0888-7543

issn

1089-8646

pii

S0888-7543(19)31077-8

journal_volume

112

pub_type

杂志文章

相关文献

GENOMICS文献大全
  • Gene-dosage mapping of 30 DNA markers on chromosome 21.

    abstract：:Using a slot-blot method for the dosage of single-copy sequences, the copy numbers of 30 chromosome 21 markers were assessed in the blood DNA of 11 patients with partial trisomy or monosomy 21 and in the DNA of a patient-derived human-hamster hybrid cell line carrying a microduplication of chromosome 21. The physical ...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/0888-7543(92)90177-t

    authors： Delabar JM,Chettouh Z,Rahmani Z,Theophile D,Blouin JL,Bono R,Kraus J,Barton J,Patterson D,Sinet PM

    更新日期：1992-07-01 00:00:00

  • Wdr12, a mouse gene encoding a novel WD-Repeat Protein with a notchless-like amino-terminal domain.

    abstract：:The WD-repeat protein family consists of a large group of structurally related yet functionally diverse proteins found predominantly in eukaryotic cells. These factors contain several (4-16) copies of a recognizable amino-acid sequence motif (the WD unit) thought to be organized into a "propeller-like" structure invol...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.2001.6682

    authors： Nal B,Mohr E,Silva MI,Tagett R,Navarro C,Carroll P,Depetris D,Verthuy C,Jordan BR,Ferrier P

    更新日期：2002-01-01 00:00:00

  • Random forests for genomic data analysis.

    abstract：:Random forests (RF) is a popular tree-based ensemble machine learning tool that is highly data adaptive, applies to "large p, small n" problems, and is able to account for correlation as well as interactions among features. This makes RF particularly appealing for high-dimensional genomic data analysis. In this articl...

    journal_title：Genomics

    pub_type： 杂志文章,评审

    doi：10.1016/j.ygeno.2012.04.003

    authors： Chen X,Ishwaran H

    更新日期：2012-06-01 00:00:00

  • Localization of the gene coding for ventricular myosin regulatory light chain (MYL2) to human chromosome 12q23-q24.3.

    abstract：:Human myosin light chain-2 (MYL2) is an important protein involved in the regulation of myosin ATPase activity in smooth muscle. In cardiac muscle, the precise role of MYL2 is not well understood; however, an increase in ventricular MYL2 is observed during myocardial hypertrophy in cardiac patients with valve stenosis...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/0888-7543(92)90161-k

    authors： Macera MJ,Szabo P,Wadgaonkar R,Siddiqui MA,Verma RS

    更新日期：1992-07-01 00:00:00

  • Fine-mapping, genomic organization, and transcript analysis of the human ubiquitin-conjugating enzyme gene UBE2L3.

    abstract：:The human UBE2L3 gene encodes the ubiquitin-conjugating enzyme UbcH7, demonstrated to participate in the ubiquitination of p53, c-Fos, and NF-kappaB in vitro. We report the fine-mapping of this four-exon gene to chromosome 22q11.2. We have constructed a comprehensive genomic clone contig across this gene, demonstratin...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.1998.5257

    authors： Moynihan TP,Cole CG,Dunham I,O'Neil L,Markham AF,Robinson PA

    更新日期：1998-07-01 00:00:00

  • Human uroporphyrinogen-III synthase: genomic organization, alternative promoters, and erythroid-specific expression.

    abstract：:Uroporphyrinogen-III (URO) synthase is the heme biosynthetic enzyme defective in congenital erythropoietic porphyria. The approximately 34-kb human URO-synthase gene (UROS) was isolated, and its organization and tissue-specific expression were determined. The gene had two promoters that generated housekeeping and eryt...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.2000.6373

    authors： Aizencang G,Solis C,Bishop DF,Warner C,Desnick RJ

    更新日期：2000-12-01 00:00:00

  • Transcriptome profiling of different developmental stages of corpus luteum during the estrous cycle in pigs.

    abstract：:To better understand the molecular basis of corpus luteum (CL) development and function RNA-Seq was utilized to identify differentially expressed genes (DEGs) in porcine CL during different physiological stages of the estrous cycle viz. early (EL), mid (ML), late (LL) and regressed (R) luteal. Stage wise comparisons o...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/j.ygeno.2020.12.008

    authors： Bharati J,Mohan NH,Kumar S,Gogoi J,Kumar S,Jose B,Punetha M,Borah S,Kumar A,Sarkar M

    更新日期：2021-01-01 00:00:00

  • A genetic map of mouse chromosome 1 near the Lsh-Ity-Bcg disease resistance locus.

    abstract：:Isozyme and restriction fragment length polymorphism (RFLP) analyses of backcross progeny, recombinant inbred strains, and congenic strains of mice positioned eight genetic markers with respect to the Lsh-Ity-Bcg disease resistance locus. Allelic isoforms of Idh-1 and Pep-3 and RFLPs detected by Southern hybridization...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/0888-7543(90)90518-y

    authors： Mock B,Krall M,Blackwell J,O'Brien A,Schurr E,Gros P,Skamene E,Potter M

    更新日期：1990-05-01 00:00:00

  • Improved gene targeting in C. elegans using counter-selection and Flp-mediated marker excision.

    abstract：:Gene targeting is widely used for the precise manipulation of genes. However, in the model organism Caenorhabditis elegans non-transposon mediated gene targeting remains laborious, and as a result has not been widely used. One obstacle to the wider use of this approach is the difficulty of identifying homologous recom...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/j.ygeno.2009.09.001

    authors： Vázquez-Manrique RP,Legg JC,Olofsson B,Ly S,Baylis HA

    更新日期：2010-01-01 00:00:00

  • Physical and genetic mapping of a human apical epithelial Na+/H+ exchanger (NHE3) isoform to chromosome 5p15.3.

    abstract：:A gene family of Na+/H+ exchanger isoforms has been identified. Characterization of rabbit NHE3 suggests that it is the apical epithelial Na+/H+ exchanger isoform responsible for transepithelial, electroneutral Na+ absorption in intestinal and renal epithelial cells. We have previously isolated from a human kidney cor...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.1993.1122

    authors： Brant SR,Bernstein M,Wasmuth JJ,Taylor EW,McPherson JD,Li X,Walker S,Pouyssegur J,Donowitz M,Tse CM

    更新日期：1993-03-01 00:00:00

  • Analysis of the human VPS13 gene family.

    abstract：:The gene mutated in chorea-acanthocytosis (CHAC; approved gene symbol VPS13A) encodes chorein, a protein similar to yeast Vps13p. We detected several similar putative human proteins by BLAST analysis of chorein. We characterized the structure of three new genes encoding these CHAC-similar proteins, located on chromoso...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/j.ygeno.2004.04.012

    authors： Velayos-Baeza A,Vettori A,Copley RR,Dobson-Stone C,Monaco AP

    更新日期：2004-09-01 00:00:00

  • Discovery of 342 putative new genes from the analysis of 5'-end-sequenced full-length-enriched cDNA human transcripts.

    abstract：:In this work we describe the process that, starting with the production of human full-length-enriched cDNA libraries using the CAP-Trapper method, led us to the discovery of 342 putative new human genes. Twenty-three thousand full-length-enriched clones, obtained from various cell lines and tissues in different develo...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/j.ygeno.2005.02.009

    authors： Dalla E,Mignone F,Verardo R,Marchionni L,Marzinotto S,Lazarević D,Reid JF,Marzio R,Klarić E,Licastro D,Marcuzzi G,Gambetta R,Pierotti MA,Pesole G,Schneider C

    更新日期：2005-06-01 00:00:00

  • Refined mapping of the Usher syndrome type III locus on chromosome 3, exclusion of candidate genes, and identification of the putative mouse homologous region.

    abstract：:A locus for Usher syndrome type III (USH3; MIM No. 276902) was recently assigned to a 5-cM region on chromosome 3q. We constructed a yeast artificial chromosome contig that allowed us to position novel polymorphisms in the region. These were typed in a total of 32 pedigrees from a geographically isolated Finnish found...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.1996.0626

    authors： Joensuu T,Blanco G,Pakarinen L,Sistonen P,Kääriäinen H,Brown S,Chapelle A,Sankila EM

    更新日期：1996-12-15 00:00:00

  • A radiation hybrid breakpoint map of the acute myeloid leukemia (AML) and limb-girdle muscular dystrophy 1A (LGMD1A) regions of chromosome 5q31 localizing 122 expressed sequences.

    abstract：:We have constructed a high-resolution map of a 6-Mb interval of human chromosome 5, band q31, incorporating 175 sequence tagged sites, of which 33 are genetic polymorphisms and 122 are nonredundant expressed sequences. The map was assembled initially as a YAC contig, incorporating data from radiation hybrid maps. To i...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.1999.5765

    authors： Horrigan SK,Bartoloni L,Speer MC,Fulton N,Kravarusic J,Ramesar R,Vance JM,Yamaoka LH,Westbrook CA

    更新日期：1999-04-01 00:00:00

  • Three murine cataract mutants (Cat2) are defective in different gamma-crystallin genes.

    abstract：:A number of murine cataract mutations have been localized to chromosome 1 close to the gamma-crystallin gene cluster (Cryg) (Everett et al., 1994, Genomics 20: 429-434; Löster et al., 1994, Genomics 23: 240-242). Based on the size of the mapping or allelism tests they have not been shown to be genetically distinct and...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.1998.5417

    authors： Klopp N,Favor J,Löster J,Lutz RB,Neuhäuser-Klaus A,Prescott A,Pretsch W,Quinlan RA,Sandilands A,Vrensen GF,Graw J

    更新日期：1998-09-01 00:00:00

  • Characterization of the complete mitochondrial genome of Uca lacteus and comparison with other Brachyuran crabs.

    abstract：:Brachyuran crabs comprise the most species-rich clade among the crustacean order Decapoda and are divided into several major superfamilies. However, the monophyly of the superfamilies Ocypodoidea and Grapsoidea in their current compositions within the Brachyura remains inconclusive. In this study, the complete mitocho...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/j.ygeno.2019.06.004

    authors： Wang Z,Shi X,Guo H,Tang D,Bai Y,Wang Z

    更新日期：2020-01-01 00:00:00

  • Human estrogen receptor-like 1 (ESRL1) gene: genomic organization, chromosomal localization, and promoter characterization.

    abstract：:Estrogen receptor-like 1a (ESRL1a; same as estrogen receptor-related orphan receptors, ERR1) belongs to a subfamily of the nuclear receptor superfamily. We have previously shown that human ESRL1a modulates estrogen responsiveness of the lactoferrin gene promoter in transiently transfected endometrial carcinoma RL95-2 ...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.1997.4850

    authors： Shi H,Shigeta H,Yang N,Fu K,O'Brian G,Teng CT

    更新日期：1997-08-15 00:00:00

  • Transcriptome sequencing of Chinese and Caucasian population identifies ethnic-associated differential transcript abundance of heterogeneous nuclear ribonucleoprotein K (hnRNPK).

    abstract：:Gene expression variations (GEV) among different ethnic groups have been a subject matter for extensive study. Relatively less known is the extent of alternative splicing variations (ASV) in the context of ethnicity. We conducted a transcriptome sequencing study of 20 lymphoblastoid cell lines obtained from Caucasian ...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/j.ygeno.2013.12.005

    authors： Li JW,Lai KP,Ching AK,Chan TF

    更新日期：2014-01-01 00:00:00

  • Accurate characterization of porcine bivariate flow karyotype by PCR and fluorescence in situ hybridization.

    abstract：:The 19 chromosomal pairs of the swine karyotype are resolved into 18 peaks denoted A to Q and Y by dual-beam flow cytometry. The chromosomal content of six peaks has previously been determined by analyzing male/female differences, karyotypes of animals carrying translocations, and PCR studies of genes with known assig...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.1993.1146

    authors： Yerle M,Schmitz A,Milan D,Chaput B,Monteagudo L,Vaiman M,Frelat G,Gellin J

    更新日期：1993-04-01 00:00:00

  • Phenylalanine hydroxylase gene: novel missense mutation in exon 7 causing severe phenylketonuria.

    abstract：:By direct sequence analysis of 94 mutant phenylalanine hydroxylase alleles using polymerase chain reaction-based techniques, we identified a C to T transition in exon 7 of the human phenylalanine hydroxylase gene that is associated with RFLP haplotypes 1 and 4. A leucine for proline substitution at position 281 can be...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/0888-7543(91)90238-a

    authors： Dworniczak B,Grudda K,Stümper J,Bartholomé K,Aulehla-Scholz C,Horst J

    更新日期：1991-01-01 00:00:00

  • Genomic definition of RIM proteins: evolutionary amplification of a family of synaptic regulatory proteins.

    abstract：:RIMs are synaptic proteins that are essential for normal neurotransmitter release. We now show that while invertebrates contain only a single RIM gene, vertebrates contain four: two large genes encoding RIM1alpha (0.50 Mb) or RIM2alpha, 2beta, and 2gamma (0.50-0.75 Mb) and two smaller genes encoding RIM3gamma (14 kb) ...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/s0888-7543(02)00024-1

    authors： Wang Y,Südhof TC

    更新日期：2003-02-01 00:00:00

  • The ubiquitin-homology gene PIC1: characterization of mouse (Pic1) and human (UBL1) genes and pseudogenes.

    abstract：:The human ubiquitin-homology domain protein PIC1 interacts with the acute promyelocytic leukemia protein PML, and both proteins form part of the large, nuclear, multiprotein complexes known as PML nuclear bodies. The normal punctate immunohistochemical staining pattern of these complexes is disrupted by viral infectio...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.1997.5091

    authors： Howe K,Williamson J,Boddy N,Sheer D,Freemont P,Solomon E

    更新日期：1998-01-01 00:00:00

  • Molecular cloning and characterization of a novel mouse epidermal differentiation gene and its promoter.

    abstract：:The transcription factor E2F1 is an important regulator of cell proliferation, apoptosis, and differentiation. A novel mouse gene (Eig3) was originally identified as up-regulated in E2F1-overexpressing keratinocytes by the rapid analysis of gene expression technique. An apparently full-length cDNA and a 2.8-kb genomic...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.2001.6518

    authors： Wang A,Johnson DG,MacLeod MC

    更新日期：2001-05-01 00:00:00

  • Genome-wide effects of DNA methyltransferase inhibitor on gene expression in double-stranded RNA transfected porcine PK15 cells.

    abstract：:Double-stranded RNA (dsRNA) is produced in host cells during viral replication. The effects of DNA demethylation on gene expression in dsRNA transfected swine cells are unclear. The study aims to profile the transcriptome changes which are induced by DNA methyltransferase inhibitor (Aza-CdR) in porcine PK15 cells tran...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/j.ygeno.2013.10.005

    authors： Wang X,Ao H,Zhai L,Bai L,He W,Yu Y,Wang C

    更新日期：2014-05-01 00:00:00

  • Molecular cloning of the critical region for glomerulopathy with fibronectin deposits (GFND) and evaluation of candidate genes.

    abstract：:Glomerulopathy with fibronectin deposits (GFND, MIM 601894) is an autosomal dominant kidney disease that leads to terminal renal failure at a median age of 47 years. It represents a distinct entity of membranoproliferative glomerulonephritis (MPGN) type III and is characterized by the unique feature of massive glomeru...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.2000.6292

    authors： Vollmer M,Kremer M,Ruf R,Miot S,Nothwang HG,Wirth J,Otto E,Krapf R,Hildebrandt F

    更新日期：2000-09-01 00:00:00

  • The mouse biliary glycoprotein gene (Bgp): partial nucleotide sequence, expression, and chromosomal assignment.

    abstract：:Transcripts related to the human carcinoembryonic antigen were found in mRNA isolated from both dimethylbenzanthracene-induced and mouse mammary tumor virus-induced mammary tumors. A cDNA library was prepared from a dimethylbenzanthracene-induced tumor, and a clone was isolated by hybridization with a human carcinoemb...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/0888-7543(91)90439-l

    authors： Robbins J,Robbins PF,Kozak CA,Callahan R

    更新日期：1991-07-01 00:00:00

  • The X chromosome of marsupials shares a highly conserved region with eutherians.

    abstract：:Ten genes, located on the long arm of the human X chromosome, were mapped in several marsupial species by somatic cell analysis and in situ hybridization. All were located on the X chromosome in each species. We conclude that the long arm of the human X chromosome represents a highly conserved region that formed part ...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/0888-7543(91)90352-f

    authors： Spencer JA,Watson JM,Graves JA

    更新日期：1991-04-01 00:00:00

  • Localization of the human UBA52 ubiquitin fusion gene to chromosome band 19p13.1-p12.

    abstract：:Because of the conservation of the ubiquitin coding sequence and the number of transcriptionally active genes and reverse-transcribed pseudogenes, it has not been possible to use ubiquitin cDNA clones to map the functional ubiquitin genes. The UBB and UBC polyubiquitin genes have previously been mapped by the use of s...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.1994.1108

    authors： Webb GC,Baker RT,Coggan M,Board PG

    更新日期：1994-02-01 00:00:00

  • Chromosome 17 markers and von Recklinghausen neurofibromatosis: a genetic linkage study in a British population.

    abstract：:A genetic linkage study of the RFLPs identified by nine DNA probes localized to the pericentromeric region and long arm of chromosome 17 has been undertaken in 16 families with von Recklinghausen neurofibromatosis (NF1). Close linkage has been shown with the markers CRI-L946 (D17S36), CRI-L581 (D17S37), p17H8 (D17Z1),...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1016/0888-7543(87)90038-3

    authors： Upadhyaya M,Sarfarazi M,Huson SM,Stephens K,Broadhead W,Harper PS

    更新日期：1987-12-01 00:00:00

  • Regional assignment of 30 expressed sequence tags on human chromosome 7 using a somatic cell hybrid panel.

    abstract：:The regional assignments of 30 expressed sequence tags (ESTs) on human chromosome 7 were determined by studying the segregation of their PCR-amplified products in a panel of mouse somatic cell hybrids. ESTs are important molecular landmarks for physical mapping and can be considered as tags to candidate genes for gene...

    journal_title：Genomics

    pub_type： 杂志文章

    doi：10.1006/geno.1995.0021

    authors： Patel RJ,Keen TJ,Grzeschik KH,Nierman WC,Hayes P,Bhattacharya SS,Inglehearn CF

    更新日期：1995-11-01 00:00:00