Fine-mapping, genomic organization, and transcript analysis of the human ubiquitin-conjugating enzyme gene UBE2L3.

Abstract:

:The human UBE2L3 gene encodes the ubiquitin-conjugating enzyme UbcH7, demonstrated to participate in the ubiquitination of p53, c-Fos, and NF-kappaB in vitro. We report the fine-mapping of this four-exon gene to chromosome 22q11.2. We have constructed a comprehensive genomic clone contig across this gene, demonstrating that the gene lies adjacent to the microsatellite marker D22S446 and spans approximately 57 kb. Four mRNA species are transcribed from this gene, differing in the length of their 3' UTR. Sequence comparison of the UBE2L3 cDNA with its murine homologue reveals a remarkably high degree of sequence conservation within the 3'UTR.

journal_name

Genomics

journal_title

Genomics

authors

Moynihan TP,Cole CG,Dunham I,O'Neil L,Markham AF,Robinson PA

doi

10.1006/geno.1998.5257

subject

Has Abstract

pub_date

1998-07-01 00:00:00

pages

124-7

issue

1

eissn

0888-7543

issn

1089-8646

pii

S0888-7543(98)95257-0

journal_volume

51

pub_type

杂志文章

相关文献

GENOMICS文献大全
  • Work efficiency: a new criterion for comprehensive comparison and evaluation of statistical methods in large-scale identification of differentially expressed genes.

    abstract::Receiver operating characteristic (ROC) has been widely used to evaluate statistical methods, but a fatal problem is that ROC cannot evaluate estimation of the false discovery rate (FDR) of a statistical method and hence the area under of curve as a criterion cannot tell us if a statistical method is conservative. To ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2011.05.006

    authors: Tan YD

    更新日期:2011-11-01 00:00:00

  • Regional assignment of the human homeobox-containing gene EN1 to chromosome 2q13-q21.

    abstract::The human homeobox-containing genes EN1 and EN2 are closely related to the Drosophila pattern formation gene engrailed (en), which may be important in brain development, as shown by gene expression studies during mouse embryogenesis. Here, we have refined the localization of EN1 to human chromosome 2q13-q21 using a ma...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1993.1045

    authors: Köhler A,Logan C,Joyner AL,Muenke M

    更新日期:1993-01-01 00:00:00

  • DXS165 detects a translocation breakpoint in a woman with choroideremia and a de novo X; 13 translocation.

    abstract::The search for the gene for choroideremia (MIM 30310), a rare retinal dystrophy, has been of great interest due to the existence of several choroideremia patients with well-defined structural chromosome aberrations, thus providing the basis for a reverse genetics approach to the isolation of this disease gene. This re...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(90)90494-f

    authors: Merry DE,Lesko JG,Siu V,Flintoff WF,Collins F,Lewis RA,Nussbaum RL

    更新日期:1990-04-01 00:00:00

  • Genetic basis of neural tube defects: the mouse gene loop-tail maps to a region of chromosome 1 syntenic with human 1q21-q23.

    abstract::A genetic basis for neural tube defects (NTD) is rarely doubted, but the genes involved have not yet been identified. This is partly due to a lack of suitable families on which to perform linkage analysis. An alternative approach is to use the many mouse genes that cause NTD as a means of isolating their human homolog...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(95)80165-i

    authors: Stanier P,Henson JN,Eddleston J,Moore GE,Copp AJ

    更新日期:1995-04-10 00:00:00

  • Transcriptional and epigenetic status of protamine 1 and 2 genes following round spermatids injection into mouse oocytes.

    abstract::The use of round spermatids that are fully active at the transcriptional level to create zygotes (i.e. round spermatid injection; ROSI) raises the question regarding the downregulation of all specific genes that are transcribed from the paternal genome at fertilization. In this study, we show that protamine 1 and 2 mR...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2007.12.004

    authors: Borghol N,Blachère T,Lefèvre A

    更新日期:2008-05-01 00:00:00

  • A refined physical map of the long arm of human chromosome 16.

    abstract::Mapping of 33 anonymous DNA probes and 12 genes to the long arm of chromosome 16 was achieved by the use of 14 mouse/human hybrid cell lines and the fragile site FRA16B. Two of the hybrid cell lines contained overlapping interstitial deletions in bands q21 and q22.1. The localization of the 12 genes has been refined. ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90313-4

    authors: Chen LZ,Harris PC,Apostolou S,Baker E,Holman K,Lane SA,Nancarrow JK,Whitmore SA,Stallings RL,Hildebrand CE

    更新日期:1991-06-01 00:00:00

  • Isolation and fine mapping of 16 novel human zinc finger-encoding cDNAs identify putative candidate genes for developmental and malignant disorders.

    abstract::We have isolated and chromosomally fine-mapped 16 novel genes belonging to the human zinc finger Krüppel family (ZNF131-140, 142, 143, 148, 151, 154, and 155), including 1 of the GLI type (ZNF143) and 3 containing a KRAB (Krüppel-associated box) segment (ZNF133, 136, and 140). Based on their map position, several of t...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.1040

    authors: Tommerup N,Vissing H

    更新日期:1995-05-20 00:00:00

  • Ancient repeated DNA elements and the regulation of the human frataxin promoter.

    abstract::Friedreich ataxia results from frataxin insufficiency caused by repeat expansion in intron 1 of the frataxin gene. Since the coding sequence is unchanged, the potential exists to ameliorate symptoms by increasing frataxin promoter activity. We therefore defined the minimal frataxin promoter in humans. Despite the fact...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2004.10.013

    authors: Greene E,Entezam A,Kumari D,Usdin K

    更新日期:2005-02-01 00:00:00

  • Differential expansion of the N-formylpeptide receptor gene cluster in human and mouse.

    abstract::The human formylpeptide receptor (FPR) gene cluster has three members: FPR1 and FPRL1, which are expressed in neutrophils and monocytes and encode seven-transmembrane-domain chemotactic receptors specific for N-formylpeptides, and FPRL2, whose function is unknown. The FPRL1 receptor is also a lipoxin A4 receptor. Usin...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5376

    authors: Gao JL,Chen H,Filie JD,Kozak CA,Murphy PM

    更新日期:1998-07-15 00:00:00

  • Human SLUG gene organization, expression, and chromosome map location on 8q.

    abstract::SLUG is a member of the snail family of zinc finger proteins. It is involved in epithelial to mesenchyme cell transition during neurulation and plays a role in limb bud development. We have isolated and described the human SLUG gene by sequencing a region spanning 4034 bp. The human SLUG gene contains three exons. The...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5367

    authors: Cohen ME,Yin M,Paznekas WA,Schertzer M,Wood S,Jabs EW

    更新日期:1998-08-01 00:00:00

  • The human immediate early gene BRF1 maps to chromosome 14q22-q24.

    abstract::BRF1 (Butyrate response factor 1) is a member of an immediate early gene family specifying putative nuclear transcription factors. A repeat motif incorporating two Cys and two His is highly conserved between family members identified from yeast, Drosophila, mouse, rat, and human. The chromosome localization of none of...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.0014

    authors: Maclean KN,See CG,McKay IA,Bustin SA

    更新日期:1995-11-01 00:00:00

  • Cloning and chromosomal mapping of three novel genes, GPR9, GPR10, and GPR14, encoding receptors related to interleukin 8, neuropeptide Y, and somatostatin receptors.

    abstract::We employed the polymerase chain reaction and genomic DNA library screening to clone novel human genes, GPR9 and GPR10, and a rat gene, GPR14. GPR9, GPR10, and GPR14 each encode G protein-coupled receptors. GPR10 and GPR14 are intronless within their coding regions, while GPR9 contains at least one intron. The recepto...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.9996

    authors: Marchese A,Heiber M,Nguyen T,Heng HH,Saldivia VR,Cheng R,Murphy PM,Tsui LC,Shi X,Gregor P

    更新日期:1995-09-20 00:00:00

  • Isolation and expression of a cDNA encoding the precursor for a novel member (ACADSB) of the acyl-CoA dehydrogenase gene family.

    abstract::The acyl-CoA dehydrogenases (ACDs) are a family of mitochondrial enzymes that oxidize straight chain or branched chain acyl-CoAs in the metabolism of fatty acids or branched chain amino acids. Deficiencies in members of this gene family are important causes of human disease. A cDNA encoding the human precursor for a n...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1994.1617

    authors: Rozen R,Vockley J,Zhou L,Milos R,Willard J,Fu K,Vicanek C,Low-Nang L,Torban E,Fournier B

    更新日期:1994-11-15 00:00:00

  • A high-resolution genetic map of the nervous locus on mouse chromosome 8.

    abstract::The nervous (nr) mutant mouse displays two gross recessive traits: both an exaggeration of juvenile hyperactivity and a pronounced ataxia become apparent during the third and fourth postnatal weeks. Using an intersubspecific intercross, we have established a high-resolution map of a segment of mouse chromosome 8 that ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1997.5193

    authors: De Jager PL,Harvey D,Polydorides AD,Zuo J,Heintz N

    更新日期:1998-03-15 00:00:00

  • Characterization of the mouse apolipoprotein Apoa-1/Apoc-3 gene locus: genomic, mRNA, and protein sequences with comparisons to other species.

    abstract::In this report we present the genomic, cDNA, and predicted protein sequences for mouse apolipoproteins A-I and CIII, as well as sequence comparisons with other species. The genes for these apolipoproteins are within 2.5 kb of each other and convergently transcribed. The almost 9 kb of genomic sequence presented extend...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/s0888-7543(05)80133-8

    authors: Januzzi JL,Azrolan N,O'Connell A,Aalto-Setälä K,Breslow JL

    更新日期:1992-12-01 00:00:00

  • i6mA-stack: A stacking ensemble-based computational prediction of DNA N6-methyladenine (6mA) sites in the Rosaceae genome.

    abstract::DNA N6-methyladenine (6 mA) is an epigenetic modification that plays a vital role in a variety of cellular processes in both eukaryotes and prokaryotes. Accurate information of 6 mA sites in the Rosaceae genome may assist in understanding genomic 6 mA distributions and various biological functions such as epigenetic i...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.09.054

    authors: Khanal J,Lim DY,Tayara H,Chong KT

    更新日期:2020-10-01 00:00:00

  • Sequence analysis of 139 kb in Xp22.1 containing spermine synthase and the 5' region of PEX.

    abstract::Human Xp22.1 contains genes involved in mineral balance that are implicated in X-linked hypophosphatemia (XLH) in humans, its murine homologue (Hyp), and another distinct murine hypophosphatemic disorder (Gy). In XLH, a gene, PEX, has been found to be mutated in up to 83% of patients but the sequences of the promoter ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1997.4876

    authors: Grieff M,Whyte MP,Thakker RV,Mazzarella R

    更新日期:1997-09-01 00:00:00

  • Howard Hughes Medical Institute and its role in genomic activities.

    abstract::Through its three operating programs, the Howard Hughes Medical Institute has supported a substantial amount of basic and clinical molecular research, has acted as a facilitator in initiating and funding a number of meetings, nationally and internationally, including work groups dealing with databases, and has support...

    journal_title:Genomics

    pub_type: 历史文章,杂志文章

    doi:10.1016/0888-7543(89)90141-9

    authors: Cahill GF,Hinton DR

    更新日期:1989-11-01 00:00:00

  • Frequent appearance of novel protein-coding sequences by frameshift translation.

    abstract::Genomic duplication, followed by divergence, contributes to organismal evolution. Several mechanisms, such as exon shuffling and alternative splicing, are responsible for novel gene functions, but they generate homologous domains and do not usually lead to drastic innovation. Major novelties can potentially be introdu...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2006.06.009

    authors: Okamura K,Feuk L,Marquès-Bonet T,Navarro A,Scherer SW

    更新日期:2006-12-01 00:00:00

  • High fidelity of whole-genome amplified DNA on high-density single nucleotide polymorphism arrays.

    abstract::Current microarray technology allows researchers to genotype a large number of SNPs with relatively small amounts of DNA. Nevertheless, researchers and clinicians still frequently face the problem of acquiring enough high-quality DNA for analysis. Whole-genome amplification (WGA) methods offer a solution for this prob...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2008.08.007

    authors: Xing J,Watkins WS,Zhang Y,Witherspoon DJ,Jorde LB

    更新日期:2008-12-01 00:00:00

  • Discovery of 342 putative new genes from the analysis of 5'-end-sequenced full-length-enriched cDNA human transcripts.

    abstract::In this work we describe the process that, starting with the production of human full-length-enriched cDNA libraries using the CAP-Trapper method, led us to the discovery of 342 putative new human genes. Twenty-three thousand full-length-enriched clones, obtained from various cell lines and tissues in different develo...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2005.02.009

    authors: Dalla E,Mignone F,Verardo R,Marchionni L,Marzinotto S,Lazarević D,Reid JF,Marzio R,Klarić E,Licastro D,Marcuzzi G,Gambetta R,Pierotti MA,Pesole G,Schneider C

    更新日期:2005-06-01 00:00:00

  • A nonsense mutation in the optic atrophy 3 gene (OPA3) causes dilated cardiomyopathy in Red Holstein cattle.

    abstract::Cardiomyopathies are severe degenerative disorders of the myocardium that lead to heart failure. During the last three decades bovine dilated cardiomyopathy (BDCMP) was observed worldwide in cattle of Holstein-Friesian origin. In the Swiss cattle population BDCMP affects Fleckvieh and Red Holstein breeds. The heart of...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2010.09.005

    authors: Owczarek-Lipska M,Plattet P,Zipperle L,Drögemüller C,Posthaus H,Dolf G,Braunschweig MH

    更新日期:2011-01-01 00:00:00

  • Chromosomal assignment of 46 brain cDNAs.

    abstract::Expressed sequence tags (ESTs) have been obtained from several hundred brain cDNAs as an initial effort to characterize expressed brain genes. These ESTs will become tools for human genome mapping and they will also provide candidate causative genes for inherited disorders affecting the central nervous system. We have...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(92)90439-y

    authors: Polymeropoulos MH,Xiao H,Glodek A,Gorski M,Adams MD,Moreno RF,Fitzgerald MG,Venter JC,Merril CR

    更新日期:1992-03-01 00:00:00

  • SCOPE++: sequence classification of homoPolymer emissions.

    abstract:BACKGROUND:mRNA polyadenylation, the addition of a poly(A) tail to the 3'-end of pre-mRNA, is a process critical to gene expression and regulation in eukaryotes. To understand the molecular mechanisms governing polyadenylation and other relevant biological processes, it is important to identify these poly(A) tails accu...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2014.07.005

    authors: Morton JT,Abrudan P,Figueroa N,Liang C,Karro JE

    更新日期:2014-09-01 00:00:00

  • Linkage mapping of human chromosome 10 microsatellite polymorphisms.

    abstract::Ten microsatellite DNA polymorphisms located on human chromosome 10 were regionally mapped using subchromosomal somatic cell hybrids and linkage analysis. The resulting order of the markers from pter-qter was [D10S89, D10S111], D10S107, D10S109, [D10S91, D10S110, D10S108, D10S88, D10S168], and D10S169. Order of the ma...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(92)90455-2

    authors: Decker RA,Moore J,Ponder B,Weber JL

    更新日期:1992-03-01 00:00:00

  • Differential transcriptional modulation of biological processes in adipocyte triglyceride lipase and hormone-sensitive lipase-deficient mice.

    abstract::Adipocyte triglyceride lipase (ATGL) and hormone-sensitive lipase (HSL) are intracellular lipases that mobilize triglycerides, the main energy source in mammals. Deletion of genes encoding ATGL (Pnpla2) or HSL (Lipe) in mice results in striking phenotypic differences, suggesting distinct roles for these lipases. The g...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2008.03.010

    authors: Pinent M,Hackl H,Burkard TR,Prokesch A,Papak C,Scheideler M,Hämmerle G,Zechner R,Trajanoski Z,Strauss JG

    更新日期:2008-07-01 00:00:00

  • Fructose-1,6-bisphosphatase: genetic and physical mapping to human chromosome 9q22.3 and evaluation in non-insulin-dependent diabetes mellitus.

    abstract::PCR primers specific to the human liver fructose-1,6-bisphosphatase (FBP) gene were designed and used to isolate a cosmid clone. Physical mapping of the FBP cosmid by FISH, and genetic mapping of an associated GA repeat polymorphism (PIC = 0.35), located the liver FBP gene to chromosome 9q22.3 with no recombination be...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.1230

    authors: Rothschild CB,Freedman BI,Hodge R,Rao PN,Pettenati MJ,Anderson RA,Akots G,Qadri A,Roh B,Fajans SS

    更新日期:1995-09-01 00:00:00

  • Construction of 110 cosmid markers and a 4.5-Mb YAC contig on human chromosome 8p12-q11.

    abstract::Microcell hybrids containing various regions of human chromosome 8 were formed by microcell-mediated transfer of neo-tagged chromosome 8 into the cells derived from severe combined immunodeficiency (SCID) mouse. Thus, 110 cosmid markers were isolated from SV40-transformed SCID fibroblast cell line (SCVA) containing a ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.1125

    authors: Kurimasa A,Suzuki N,Kumano S,Li H,Wells D,Wagner MJ,Chen F,Chen DJ,Oshimura M

    更新日期:1995-07-20 00:00:00

  • Expression analysis of a panel of long non-coding RNAs (lncRNAs) revealed their potential as diagnostic biomarkers in bladder cancer.

    abstract:INTRODUCTION:Long non-coding RNAs (lncRNAs) have fundamental roles in cell migration, proliferation, invasion and metastasis. METHODS:In the current study, we evaluated expression of a panel of lncRNAs in bladder cancer tissues, adjacent non-cancerous tissues (ANCTs) and normal bladder tissues to evaluate their diagno...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2019.04.020

    authors: Abdolmaleki F,Ghafoui-Fard S,Taheri M,Mordadi A,Afsharpad M,Varmazyar S,Nazparvar B,Oskooei VK,Omrani MD

    更新日期:2020-01-01 00:00:00

  • The L19 ribosomal protein gene (RPL19): gene organization, chromosomal mapping, and novel promoter region.

    abstract::The intron-containing genes encoding rat and human ribosomal protein L19 (RPL19) have been cloned. The DNA sequences of the entire rat RPL19 gene and the 5' end of the human RPL19 gene have been determined. Sequence comparison of corresponding regions of the two genes reveals a striking interspecies homology in the 5'...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(95)80036-l

    authors: Davies B,Fried M

    更新日期:1995-01-20 00:00:00