Human estrogen receptor-like 1 (ESRL1) gene: genomic organization, chromosomal localization, and promoter characterization.

Abstract:

:Estrogen receptor-like 1a (ESRL1a; same as estrogen receptor-related orphan receptors, ERR1) belongs to a subfamily of the nuclear receptor superfamily. We have previously shown that human ESRL1a modulates estrogen responsiveness of the lactoferrin gene promoter in transiently transfected endometrial carcinoma RL95-2 cells. In this study, we cloned and characterized the human ESRL1 gene. Through the fluorescence in situ hybridization method, the ESRL1 gene was localized to the centromere region of chromosome 11q12. Partial sequencing, restriction mapping, and PCR analysis revealed that the ESRL1 gene consists of seven exons and is approximately 20 kb in length. We found that the smallest exon (exon 3) contains 117 bp and the largest exon (exon 7) has 1032 bp. The smallest intron (intron 5) is only 88 bp long and the largest intron (intron 2) is 8 kb long. All introns have the conserved GT and AG dinucleotides present at the donor and acceptor sites, respectively. Like the estrogen receptor, the highly conserved DNA-binding domain of hESRL1a is encoded by exon 2 and exon 3, and the intron/exon junctions (2 and 3) are well conserved between the two genes. Primer extension analysis revealed multiple transcription initiation start sites in human uterine (HeLa, HEC, and RL95-2) cell lines. However, one major initiation start site was found by RNase protection assay. The hESRL1a mRNA is differentially expressed in various human tissues. The nucleotide sequence adjacent to the transcription start sites of the ESRL1 lacks the typical TATA and CAAT boxes but is GC rich and contains 10 consensus Sp1-binding elements and two E boxes. The region that contains these transcription factor-binding elements showed a high level of promoter activity when transiently transfected into RL95-2 cells.

journal_name

Genomics

journal_title

Genomics

authors

Shi H,Shigeta H,Yang N,Fu K,O'Brian G,Teng CT

doi

10.1006/geno.1997.4850

subject

Has Abstract

pub_date

1997-08-15 00:00:00

pages

52-60

issue

1

eissn

0888-7543

issn

1089-8646

pii

S0888-7543(97)94850-3

journal_volume

44

pub_type

杂志文章

相关文献

GENOMICS文献大全
  • Morquio A syndrome: cloning, sequence, and structure of the human N-acetylgalactosamine 6-sulfatase (GALNS) gene.

    abstract::Deficiency of the lysosomal enzyme, N-acetylgalactosamine 6-sulfatase (GALNS;EC 3.1.6.4), results in the storage of the glycosaminoglycans, keratan sulfate and chondroitin 6-sulfate, which leads to the lysosomal storage disorder Morquio A syndrome. Four overlapping genomic clones derived from a chromosome 16-specific ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1994.1443

    authors: Morris CP,Guo XH,Apostolou S,Hopwood JJ,Scott HS

    更新日期:1994-08-01 00:00:00

  • Differential transcriptional modulation of biological processes in adipocyte triglyceride lipase and hormone-sensitive lipase-deficient mice.

    abstract::Adipocyte triglyceride lipase (ATGL) and hormone-sensitive lipase (HSL) are intracellular lipases that mobilize triglycerides, the main energy source in mammals. Deletion of genes encoding ATGL (Pnpla2) or HSL (Lipe) in mice results in striking phenotypic differences, suggesting distinct roles for these lipases. The g...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2008.03.010

    authors: Pinent M,Hackl H,Burkard TR,Prokesch A,Papak C,Scheideler M,Hämmerle G,Zechner R,Trajanoski Z,Strauss JG

    更新日期:2008-07-01 00:00:00

  • The gene for the muscle-specific enolase is on the short arm of human chromosome 17.

    abstract::The human gene encoding the muscle-specific beta-enolase has been isolated. The beta-enolase gene was mapped to chromosome 17 by analysis of a panel of rodent-human somatic cell hybrids. The gene was further localized to the short arm and tentatively to the region 17pter-p11 by analysis of cell hybrids and transfectan...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(90)90467-9

    authors: Feo S,Oliva D,Barbieri G,Xu WM,Fried M,Giallongo A

    更新日期:1990-01-01 00:00:00

  • Molecular characterization of human neogenin, a DCC-related protein, and the mapping of its gene (NEO1) to chromosomal position 15q22.3-q23.

    abstract::Neogenin was first identified in the chick embryo, and like a number of cell surface proteins of the immunoglobulin (Ig) superfamily, including N-CAM and L1 (generally called cell adhesion molecules or CAMs), it is expressed on growing nerve cells in the developing nervous system of vertebrate embryos. Neogenin is als...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1997.4688

    authors: Vielmetter J,Chen XN,Miskevich F,Lane RP,Yamakawa K,Korenberg JR,Dreyer WJ

    更新日期:1997-05-01 00:00:00

  • Organization and evolutionary relatedness of OR37 olfactory receptor genes in mouse and human.

    abstract::We report a comprehensive comparative analysis of human and mouse olfactory receptor (OR) genes encoding OR37 subtypes to determine the repertoire, chromosomal organization, and relatedness of these genes. Two OR37 clusters were found in both mouse (chromosome 4) and human (chromosome 9); with five genes in cluster I ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/s0888-7543(03)00116-2

    authors: Hoppe R,Breer H,Strotmann J

    更新日期:2003-09-01 00:00:00

  • Complete structural organization of the human alpha 1 (V) collagen gene (COL5A1): divergence from the conserved organization of other characterized fibrillar collagen genes.

    abstract::Genes that encode the vertebrate fibrillar collagen types I-III have previously been shown to share a highly conserved intron/exon organization, thought to reflect common ancestry and evolutionary pressures at the protein level. We report here the complete intron/exon organization of COL5A1, the human gene that encode...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.9961

    authors: Takahara K,Hoffman GG,Greenspan DS

    更新日期:1995-10-10 00:00:00

  • Point mutation in the human dystrophin gene: identification through western blot analysis.

    abstract::Using antibodies directed against the amino-terminus of dystrophin, we identified a truncated protein in a Duchenne muscular dystrophy patient. Antibodies directed against the carboxy-terminus failed to identify any cross-reactive material, a result consistent with premature termination of dystrophin translation. The ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90332-9

    authors: Bulman DE,Gangopadhyay SB,Bebchuck KG,Worton RG,Ray PN

    更新日期:1991-06-01 00:00:00

  • A draft gene regulatory network for cellular totipotency reprogramming during plant somatic embryogenesis.

    abstract::The complexity of the somatic embryogenesis (SE) transcriptome suggests that numerous molecules are involved. To understand better the functional genomics of complex molecular systems during this important reprogramming process, we used bioinformatics and a pathway database to construct a draft network based on transc...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2007.07.007

    authors: Zeng F,Zhang X,Cheng L,Hu L,Zhu L,Cao J,Guo X

    更新日期:2007-11-01 00:00:00

  • Bilateral congenital cataracts result from a gain-of-function mutation in the gene for aquaporin-0 in mice.

    abstract::Cataract Tohoku (Cat(Tohm)) is a dominant cataract mutation that leads to severe degeneration of lens fiber cells. Linkage analysis showed that the Cat(Tohm) mutation is located on mouse chromosome 10, close to the gene for aquaporin-0 (Aqp0), which encodes a membrane protein that is expressed specifically in lens fib...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/s0888-7543(03)00029-6

    authors: Okamura T,Miyoshi I,Takahashi K,Mototani Y,Ishigaki S,Kon Y,Kasai N

    更新日期:2003-04-01 00:00:00

  • iDNA6mA-PseKNC: Identifying DNA N6-methyladenosine sites by incorporating nucleotide physicochemical properties into PseKNC.

    abstract::N6-methyladenine (6mA) is one kind of post-replication modification (PTM or PTRM) occurring in a wide range of DNA sequences. Accurate identification of its sites will be very helpful for revealing the biological functions of 6mA, but it is time-consuming and expensive to determine them by experiments alone. Unfortuna...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2018.01.005

    authors: Feng P,Yang H,Ding H,Lin H,Chen W,Chou KC

    更新日期:2019-01-01 00:00:00

  • Analysis of the human VPS13 gene family.

    abstract::The gene mutated in chorea-acanthocytosis (CHAC; approved gene symbol VPS13A) encodes chorein, a protein similar to yeast Vps13p. We detected several similar putative human proteins by BLAST analysis of chorein. We characterized the structure of three new genes encoding these CHAC-similar proteins, located on chromoso...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2004.04.012

    authors: Velayos-Baeza A,Vettori A,Copley RR,Dobson-Stone C,Monaco AP

    更新日期:2004-09-01 00:00:00

  • Prioritizing drug targets in Clostridium botulinum with a computational systems biology approach.

    abstract::A computational and in silico system level framework was developed to identify and prioritize the antibacterial drug targets in Clostridium botulinum (Clb), the causative agent of flaccid paralysis in humans that can be fatal in 5 to 10% of cases. This disease is difficult to control due to the emergence of drug-resis...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2014.05.002

    authors: Muhammad SA,Ahmed S,Ali A,Huang H,Wu X,Yang XF,Naz A,Chen J

    更新日期:2014-07-01 00:00:00

  • Beware of using small statistical samples when assessing the quality of a DNA library.

    abstract::DNA libraries often contain very large numbers of clones (from 1000 up to 700,000). Since at present it is impossible to analyze all of these clones, usually statistical samples comprising less than 100 clones are tested. The quality of the library is then assessed by linear extrapolation. Occasionally, full coverage ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1994.1476

    authors: Köllner M,Greulich KO

    更新日期:1994-09-01 00:00:00

  • An extended genetic linkage map and an "index" map for human chromosome 17.

    abstract::Our previous genetic map for chromosome 17 has been expanded to include 72 loci defined by 90 RFLP markers and four microsatellite markers assayed by the polymerase chain reaction. Forty-one of these loci were ordered with odds greater than 1000:1 against local inversion, and the other 31 were ordered within 95% confi...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1993.1007

    authors: O'Connell P,Plaetke R,Matsunami N,Odelberg S,Jorde L,Chance P,Leppert M,Lalouel JM,White R

    更新日期:1993-01-01 00:00:00

  • Genomic mapping by end-characterized random clones: a mathematical analysis.

    abstract::Physical maps can be constructed by "fingerprinting" a large number of random clones and inferring overlap between clones when the fingerprints are sufficiently similar. E. Lander and M. Waterman (Genomics 2: 231-239, 1988) gave a mathematical analysis of such mapping strategies. The analysis is useful for comparing v...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(95)80086-2

    authors: Port E,Sun F,Martin D,Waterman MS

    更新日期:1995-03-01 00:00:00

  • HERV-K-T47D-Related long terminal repeats mediate polyadenylation of cellular transcripts.

    abstract::The human genome harbors thousands of long terminal repeats (LTRs) that are derived from endogenous retroviruses and contain elements able to regulate the expression of neighboring cellular genes. We have investigated the ability of human endogenous retroviral (HERV)-K LTRs to provide transcriptional processing signal...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2000.6175

    authors: Baust C,Seifarth W,Germaier H,Hehlmann R,Leib-Mösch C

    更新日期:2000-05-15 00:00:00

  • Identification and characterization of an Xq26-q27 duplication in a family with spina bifida and panhypopituitarism suggests the involvement of two distinct genes.

    abstract::We investigated a family with a duplication, dup(X)q26-q27, that was present in two brothers, their mother, and their maternal grandmother. The brothers carrying the duplication displayed spina bifida and panhypopituitarism, whereas a third healthy brother inherited the normal X chromosome. Preferential inactivation o...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2000.6327

    authors: Hol FA,Schepens MT,van Beersum SE,Redolfi E,Affer M,Vezzoni P,Hamel BC,Karnes PS,Mariman EC,Zucchi I

    更新日期:2000-10-15 00:00:00

  • Yeast artificial chromosome cloning of 3.2 megabases within chromosomal band 11q24 closely linking c-ets 1 and Fli-1 and encompassing the Ewing sarcoma breakpoint.

    abstract::Human chromosome 11 harbors many genes of medical significance and cancer-related rearrangements. The availability of cloned DNA in cosmids and in yeast artificial chromosomes (YACs), combined with fluorescence in situ hybridization analysis, has led to the cloning of genes at sites of chromosomal breakpoints in acute...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1994.1354

    authors: Selleri L,Giovannini M,Hermanson GG,Romo A,Quackenbush J,Penny L,Khristich JV,Evans GA

    更新日期:1994-07-01 00:00:00

  • Chromosomal localization of the gastric and brain receptors for cholecystokinin (CCKAR and CCKBR) in human and mouse.

    abstract::Receptors for cholcystokinin (CCK) can be pharmacologically classified into at least two distinct subtypes, CCKAR and CCKBR. In an effort to determine whether the CCKA and CCKB receptors may be associated with certain CNS or gastrointestinal diseases, we have localized and compared the human and mouse chromosomal loci...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(95)80018-h

    authors: Huppi K,Siwarski D,Pisegna JR,Wank S

    更新日期:1995-02-10 00:00:00

  • The genetic equidistance phenomenon at the proteomic level.

    abstract::The field of molecular evolution started with the alignment of a few protein sequences in the early 1960s. Among the first results found, the genetic equidistance result has turned out to be the most unexpected. It directly inspired the ad hoc universal molecular clock hypothesis that in turn inspired the neutral theo...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2016.03.002

    authors: Luo D,Huang S

    更新日期:2016-07-01 00:00:00

  • XY sex reversal associated with a nonsense mutation in SRY.

    abstract::Sex determination in humans is mediated through the expression of a testis-determining gene on the Y chromosome. In humans, a candidate gene for the testis-determining factor (TDF) that encodes a protein with a putative DNA-binding motif and has been isolated is termed SRY. Here we describe an XY sex-reversed female w...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(92)90164-n

    authors: McElreavey KD,Vilain E,Boucekkine C,Vidaud M,Jaubert F,Richaud F,Fellous M

    更新日期:1992-07-01 00:00:00

  • Bisulfite genomic sequencing-derived methylation profile of the xist gene throughout early mouse development.

    abstract::Differential epigenetic modification by methylation of CpG dinucleotides is a candidate mechanism that may identify the alleles of imprinted genes and result in monoallelic expression of either the maternal or the paternal allele. Determination of the allelic methylation status of imprinted genes in the gametes and du...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5570

    authors: McDonald LE,Paterson CA,Kay GF

    更新日期:1998-12-15 00:00:00

  • Identification of eight genes encoding chemokine-like factor superfamily members 1-8 (CKLFSF1-8) by in silico cloning and experimental validation.

    abstract::TM4SF11 is only 102 kb from the chemokine gene cluster composed of SCYA22, SCYD1, and SCYA17 on chromosome 16q13. CKLF maps on chromosome 16q22. CKLFs have some characteristics associated with the CCL22/MDC, CX3CL1/fractalkine, CCL17/TARC, and TM4SF proteins. Bioinformatics based on CKLF2 cDNA and protein sequences in...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/s0888-7543(03)00095-8

    authors: Han W,Ding P,Xu M,Wang L,Rui M,Shi S,Liu Y,Zheng Y,Chen Y,Yang T,Ma D

    更新日期:2003-06-01 00:00:00

  • Mutation identification of the DSPP in a Chinese family with DGI-II and an up-to-date bioinformatic analysis.

    abstract::In this study, through linkage analysis of a four-generation Chinese family with multiple members afflicted with DGI (type II), we identified a novel missense mutation in DSPP. The mutation was located in exon 2 at the second nucleotide position of the last codon and resulted in a substitution of a proline with a leuc...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2012.01.006

    authors: Li D,Du X,Zhang R,Shen B,Huang Y,Valenzuela RK,Wang B,Zhao H,Liu Z,Li J,Xu Z,Gao L,Ma J

    更新日期:2012-04-01 00:00:00

  • Structure and polymorphism of the mouse myelin/oligodendrocyte glycoprotein gene.

    abstract::We have isolated and characterized genomic clones containing the mouse myelin/oligodendrocyte glycoprotein (MOG) gene. It spans a region of 12.5 kb and consists of eight exons. Its exon-intron structure differs from that of classical MHC-class I genes, with which it is linked in the mouse genome. Nucleotide sequencing...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1994.1456

    authors: Daubas P,Pham-Dinh D,Dautigny A

    更新日期:1994-09-01 00:00:00

  • The imprinted oedematous-small mutation on mouse chromosome 2 identifies new roles for Gnas and Gnasxl in development.

    abstract::The Gnas locus is highly complex and encodes several oppositely imprinted and alternatively spliced transcripts. Gnas itself encodes Gsalpha, which is involved in endocrine function and bone development, but the roles for the other transcripts have not been established. Here we describe a mouse mutation that provides ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2002.6842

    authors: Skinner JA,Cattanach BM,Peters J

    更新日期:2002-10-01 00:00:00

  • Analyses of circRNA and mRNA profiles in the submandibular gland in hypertension.

    abstract::The aim of this study was to elucidate the roles played by circular RNAs (circRNAs) in the mechanism underlying submandibular gland (SMG) dysfunction in hypertension. We employed RNA-seq to analyze the circRNA and mRNA expression profiles of SMGs. Seventy-five differentially expressed (DE) circRNAs and 691 DE mRNAs we...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.11.016

    authors: Shen ZJ,Han YC,Nie MW,Xiang RL,Xie HZ

    更新日期:2021-01-01 00:00:00

  • Systems-level analysis identifies key regulators driving epileptogenesis in temporal lobe epilepsy.

    abstract::Temporal lobe epilepsy (TLE) is the most prevalent and often devastating form of epilepsy. The molecular mechanism underlying the development of TLE remains largely unclear, which hinders the discovery of effective antiepileptogenic drugs. Here we adopted a systems-level approach integrating transcriptomic profiles of...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2019.09.020

    authors: Fu Y,Wu Z,Guo Z,Chen L,Ma Y,Wang Z,Xiao W,Wang Y

    更新日期:2020-03-01 00:00:00

  • Construction, database integration, and application of an Oenothera EST library.

    abstract::Coevolution of cellular genetic compartments is a fundamental aspect in eukaryotic genome evolution that becomes apparent in serious developmental disturbances after interspecific organelle exchanges. The genus Oenothera represents a unique, at present the only available, resource to study the role of the compartmenta...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2006.05.010

    authors: Mrácek J,Greiner S,Cho WK,Rauwolf U,Braun M,Umate P,Altstätter J,Stoppel R,Mlcochová L,Silber MV,Volz SM,White S,Selmeier R,Rudd S,Herrmann RG,Meurer J

    更新日期:2006-09-01 00:00:00

  • Solh, the mouse homologue of the Drosophila melanogaster small optic lobes gene: organization, chromosomal mapping, and localization of gene product to the olfactory bulb.

    abstract::The Drosophila melanogaster small optic lobes gene (sol) is required for normal development of the neuropiles of the medulla and lobula complexes of the adult optic lobes. The predicted protein products of sol and its human homologue SOLH contain zinc-finger-like repeats, a calpain-like protease domain, and a C-termin...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1999.6098

    authors: Kamei M,Webb GC,Heydon K,Hendry IA,Young IG,Campbell HD

    更新日期:2000-02-15 00:00:00