Reevaluation of interaction of cis-dichloro(ethylenediamine)platinum(II) with DNA.

Abstract:

:Intrastrand cross-links represent the majority of modifications in DNA resulting from interaction with the cancer chemotherapeutic drug cis-diamminedichloroplatinum(II) (cis-DDP). These adducts were recently characterized although several discrepancies remained to be resolved. In these studies, [3H]-cis-dichloro(ethylenediamine)platinum(II) (cis-DEP) was used because of the convenience of the radiolabel; this analogue produces adducts at identical sites in DNA as cis-DDP. Both drugs platinate the following sequences in DNA: GG, 65%; AG, 25%; GNG, 6%. The adduct at AG sequences invariably has adenine on the 5'-terminus of the dimer. The present enzyme digestion protocol included P1 nuclease, which produced complete digestion rather than as previously reported. The frequency of platination at GG was too high to be explained by an initial monofunctional platination at any guanine. However, direct bifunctional attack preferentially at GG was obviated because monofunctional adducts could be trapped with thiourea at short time periods. After short incubations, with cis-DEP and removal of unreacted drug, the monofunctional adducts slowly rearranged to bifunctional adducts. It is suggested that this evolution of adducts may result from the drug "walking" along the double helix, a phenomenon that does not appear to occur in single-stranded DNA.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Eastman A

doi

10.1021/bi00361a026

subject

Has Abstract

pub_date

1986-07-01 00:00:00

pages

3912-5

issue

13

eissn

0006-2960

issn

1520-4995

journal_volume

25

pub_type

杂志文章
  • Sugars Require Rigid Multivalent Displays for Activation of Mouse Sperm Acrosomal Exocytosis.

    abstract::As a prerequisite to mammalian fertilization, the sperm acrosomal vesicle fuses with the plasma membrane and the acrosome contents are exocytosed. Induction occurs through engagement of the sperm receptors by multiple sugar residues. Multivalent polymers displaying mannose, fucose, or GlcNAc are effective synthetic in...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00166

    authors: Huang H,Rodolis MT,Bhatia SR,Sampson NS

    更新日期:2017-06-06 00:00:00

  • Kinetics and mechanism of transitions involving the lamellar, cubic, inverted hexagonal, and fluid isotropic phases of hydrated monoacylglycerides monitored by time-resolved X-ray diffraction.

    abstract::A study of the dynamics and mechanism of the various thermotropic phase transitions undergone by the hydrated monoacylglycerides monoolein and monoelaidin, in the temperature range of 20-120 degrees C and from 0 to 5 M NaCl, has been undertaken. Measurements were made by using time-resolved X-ray diffraction at the Co...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00394a008

    authors: Caffrey M

    更新日期:1987-10-06 00:00:00

  • Cyclopiazonic acid biosynthesis in Aspergillus sp.: characterization of a reductase-like R* domain in cyclopiazonate synthetase that forms and releases cyclo-acetoacetyl-L-tryptophan.

    abstract::The fungal neurotoxin alpha-cyclopiazonic acid (CPA), a nanomolar inhibitor of Ca2+-ATPase, has a pentacyclic indole tetramic acid scaffold that arises from one molecule of tryptophan, acetyl-CoA, malonyl-CoA, and dimethylallyl pyrophosphate by consecutive action of three enzymes, CpaS, CpaD, and CpaO. CpaS is a hybri...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901123r

    authors: Liu X,Walsh CT

    更新日期:2009-09-15 00:00:00

  • Primary structure of Escherichia coli ribosomal protein L31.

    abstract::Protein L31 from the 50S ribosomal subunit of Escherichia coli was manually sequenced by the dansyl-Edman method. Owing to the availability of only small quantities of purified L31, sequencing methods were scaled down such that the entire primary structure could be determined with 700 microgram of protein. The techniq...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00596a020

    authors: Brosius J

    更新日期:1978-02-07 00:00:00

  • Structure of the major carbohydrate fragment of the Leishmania donovani lipophosphoglycan.

    abstract::The major carbohydrate fragment from the lipophosphoglycan of Leishmania donovani was generated by mild acid hydrolysis (0.02 N HCl, 5 min, 100 degrees C) and purified by chromatography on DE-52 cellulose and thin layer. By a combination of analyses including gas-liquid chromatography-mass spectrometry and 1H NMR, the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00393a042

    authors: Turco SJ,Hull SR,Orlandi PA Jr,Shepherd SD,Homans SW,Dwek RA,Rademacher TW

    更新日期:1987-09-22 00:00:00

  • Purification and characterization of the chaperonin 10 and chaperonin 60 proteins from Rhodobacter sphaeroides.

    abstract::Two heat-shock proteins that show high identity with the Escherichia coli chaperonin 60 (groEL) and chaperonin 10 (groES) chaperonin proteins were purified and characterized from photolithoautotrophically grown Rhodobacter sphaeroides. The proteins were purified by using sucrose density gradient centrifugation and Mon...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00247a013

    authors: Terlesky KC,Tabita FR

    更新日期:1991-08-20 00:00:00

  • Solution structure of reduced monomeric Q133M2 copper, zinc superoxide dismutase (SOD). Why is SOD a dimeric enzyme?.

    abstract::Copper, zinc superoxide dismutase is a dimeric enzyme, and it has been shown that no cooperativity between the two subunits of the dimer is operative. The substitution of two hydrophobic residues, Phe 50 and Gly 51, with two Glu's at the interface region has disrupted the quaternary structure of the protein, thus prod...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9803473

    authors: Banci L,Benedetto M,Bertini I,Del Conte R,Piccioli M,Viezzoli MS

    更新日期:1998-08-25 00:00:00

  • Kinetic consequences of introducing a proximal selenocysteine ligand into cytochrome P450cam.

    abstract::The structural, electronic, and catalytic properties of cytochrome P450cam are subtly altered when the cysteine that coordinates to the heme iron is replaced with a selenocysteine. To map the effects of the sulfur-to-selenium substitution on the individual steps of the catalytic cycle, we conducted a comparative kinet...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00939

    authors: Vandemeulebroucke A,Aldag C,Stiebritz MT,Reiher M,Hilvert D

    更新日期:2015-11-10 00:00:00

  • Role of metals in the reaction catalyzed by protein farnesyltransferase.

    abstract::Protein farnesyltransferase catalyzes the posttranslational farnesylation of several proteins involved in signal transduction, including Ras, and is a target enzyme for antitumor therapies. Efficient product formation catalyzed by protein farnesyltransferase requires an enzyme-bound zinc cation and high concentrations...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0011781

    authors: Saderholm MJ,Hightower KE,Fierke CA

    更新日期:2000-10-10 00:00:00

  • Comparison of Alicyclobacillus acidocaldarius o-Succinylbenzoate Synthase to Its Promiscuous N-Succinylamino Acid Racemase/ o-Succinylbenzoate Synthase Relatives.

    abstract::Studying the evolution of catalytically promiscuous enzymes like those from the N-succinylamino acid racemase/ o-succinylbenzoate synthase (NSAR/OSBS) subfamily can reveal mechanisms by which new functions evolve. Some enzymes in this subfamily have only OSBS activity, while others catalyze OSBS and NSAR reactions. We...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00088

    authors: Odokonyero D,McMillan AW,Ramagopal UA,Toro R,Truong DP,Zhu M,Lopez MS,Somiari B,Herman M,Aziz A,Bonanno JB,Hull KG,Burley SK,Romo D,Almo SC,Glasner ME

    更新日期:2018-07-03 00:00:00

  • Binding kinetics of glucose and allosteric activators to human glucokinase reveal multiple conformational states.

    abstract::Slow conformational changes have been proposed to be responsible for the kinetic positive cooperativity of glucokinase (GK) with glucose. Induced-fit and preexisting equilibrium kinetic models have been previously suggested. In the present study, equilibrium and pre-steady-state fluorescence spectroscopy has been used...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900374c

    authors: Antoine M,Boutin JA,Ferry G

    更新日期:2009-06-16 00:00:00

  • Inversion of receptor binding preferences by mutagenesis: free energy thermodynamic integration studies on sugar binding to L-arabinose binding proteins.

    abstract::The Escherichia coli L-arabinose-binding protein (ABP) participates as a specific receptor in the transport of L-arabinose, D-fucose, and D-galactose through the periplasmic space. The wild-type protein binds L-arabinose about 40 times more strongly than D-fucose. A mutation of the protein at position 108 (Met-->Leu) ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00080a013

    authors: Zacharias M,Straatsma TP,McCammon JA,Quiocho FA

    更新日期:1993-07-27 00:00:00

  • The deazapurine biosynthetic pathway revealed: in vitro enzymatic synthesis of PreQ(0) from guanosine 5'-triphosphate in four steps.

    abstract::Deazapurine-containing secondary metabolites comprise a broad range of structurally diverse nucleoside analogues found throughout biology, including various antibiotics produced by species of Streptomyces bacteria and the hypermodified tRNA bases queuosine and archaeosine. Despite early interest in deazapurines as ant...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900400e

    authors: McCarty RM,Somogyi A,Lin G,Jacobsen NE,Bandarian V

    更新日期:2009-05-12 00:00:00

  • Nuclear overhauser studies of CCGGAp, ACCGGp, and ACCGGUp.

    abstract::Nuclear Overhauser effect (NOE) measurements are reported for the nonexchangeable base and ribose 1' proton resonances of CCGGAp, ACCGGp, and ACCGGUp. The results permit assignment of these resonances to particular nucleotides in the sequences. The NOE data rule out conformations containing syn glycosidic linkages and...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00271a005

    authors: Petersheim M,Turner DH

    更新日期:1983-01-18 00:00:00

  • Iron regulatory element and internal loop/bulge structure for ferritin mRNA studied by cobalt(III) hexammine binding, molecular modeling, and NMR spectroscopy.

    abstract::The ferritin IRE, a highly conserved (96-99% in vertebrates) mRNA translation regulatory element in animal mRNA, was studied by molecular modeling (using MC-SYM and DOCKING) and by NMR spectroscopy. Cobalt(III) hexammine was used to model hydrated Mg2+. IRE isoforms in other mRNAs regulate mRNA translation or stabilit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9719814

    authors: Gdaniec Z,Sierzputowska-Gracz H,Theil EC

    更新日期:1998-02-10 00:00:00

  • "Molecular switches" on mGluR allosteric ligands that modulate modes of pharmacology.

    abstract::G-protein-coupled receptors (GPCRs) represent the largest class of drug targets, accounting for more than 40% of marketed drugs; however, discovery efforts for many GPCRs have failed to provide viable drug candidates. Historically, drug discovery efforts have focused on developing ligands that act at the orthosteric s...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi200129s

    authors: Wood MR,Hopkins CR,Brogan JT,Conn PJ,Lindsley CW

    更新日期:2011-04-05 00:00:00

  • Subunit interactions of tryptophan synthase from Escherichia coli as revealed by binding studies with pyridoxal phosphate analogues.

    abstract::An improved purification procedure for the alpha 2 beta 2 complex of tryptophan synthase from Escherichia coli has been developed. It consists of DEAE-Sephacel chromatography, followed by hydrophobic chromatography on Sepharose CL 4B, and leads to material with a higher specific activity than reported previously. Inhi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00560a020

    authors: Tschopp J,Kirschner K

    更新日期:1980-09-16 00:00:00

  • The structural basis for pseudoreversion of the E165D lesion by the secondary S96P mutation in triosephosphate isomerase depends on the positions of active site water molecules.

    abstract::The structural basis for the improvement in catalytic efficiency of the mutant E165D chicken triosephosphate isomerase by the secondary mutation, S96P, has been analyzed using a combination of X-ray crystallography and Fourier transform infrared spectroscopy. All X-ray structures were of the complex of phosphoglycoloh...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00041a041

    authors: Komives EA,Lougheed JC,Liu K,Sugio S,Zhang Z,Petsko GA,Ringe D

    更新日期:1995-10-17 00:00:00

  • Normal modes of prion proteins: from native to infectious particle.

    abstract::Prion proteins (PrP) are the infectious agent in transmissible spongiform encephalopathies (i.e., mad cow disease). To be infectious, prion proteins must undergo a conformational change involving a decrease in α-helical content along with an increase in β-strand content. This conformational change was evaluated by mea...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1010514

    authors: Samson AO,Levitt M

    更新日期:2011-03-29 00:00:00

  • Common chelatase design in the branched tetrapyrrole pathways of heme and anaerobic cobalamin synthesis.

    abstract::Prosthetic groups such as heme, chlorophyll, and cobalamin (vitamin B(12)) are characterized by their branched biosynthetic pathway and unique metal insertion steps. The metal ion chelatases can be broadly classed either as single-subunit ATP-independent enzymes, such as the anaerobic cobalt chelatase and the protopor...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9906773

    authors: Schubert HL,Raux E,Wilson KS,Warren MJ

    更新日期:1999-08-17 00:00:00

  • Multiple conformations of NAD and NADH when bound to human cytosolic and mitochondrial aldehyde dehydrogenase.

    abstract::Crystallographic analysis revealed that the nicotinamide ring of NAD can bind with multiconformations to aldehyde dehydrogenase (ALDH) (Ni, L., Zhou, J., Hurley, T. D., and Weiner, H. (1999) Protein Sci. 8, 2784-2790). Electron densities can be defined for two conformations, neither of which appears to be compatible w...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi012197t

    authors: Hammen PK,Allali-Hassani A,Hallenga K,Hurley TD,Weiner H

    更新日期:2002-06-04 00:00:00

  • Purification and characterization of a cathepsin D protease from bovine chromaffin granules.

    abstract::Purification and potential tachykinin and enkephalin precursor cleaving enzymes from bovine chromaffin granules was undertaken using as substrates the model precursors 35S-(Met)-beta-preprotachykinin [35S-(Met)-beta-PPT] and 35S-(Met)-preproenkephalin [35S-(Met)-PPE]. Purification by concanavalin A-Sepharose, Sephacry...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00132a011

    authors: Krieger TJ,Hook VY

    更新日期:1992-05-05 00:00:00

  • Heterologous expression of photoreceptor peripherin/rds and Rom-1 in COS-1 cells: assembly, interactions, and localization of multisubunit complexes.

    abstract::Peripherin/rds is a 39 kDa integral membrane glycoprotein essential for normal photoreceptor cell development in vertebrates. It has been implicated in several human retinal degenerative diseases including retinitis pigmentosa and macular degeneration and is thought to play a structural role at photoreceptor outer seg...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00043a028

    authors: Goldberg AF,Moritz OL,Molday RS

    更新日期:1995-10-31 00:00:00

  • Site-directed mutagenesis of highly conserved residues in helix VIII of subunit I of the cytochrome bo ubiquinol oxidase from Escherichia coli: an amphipathic transmembrane helix that may be important in conveying protons to the binuclear center.

    abstract::Cytochrome bo from Escherichia coli is a ubiquinol oxidase which is a member of the superfamily of heme-copper respiratory oxidases. This superfamily, which includes the eukaryotic cytochrome c oxidases, has in common a bimetallic center consisting of a high-spin heme component and a copper atom (CuB) which is the sit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00092a029

    authors: Thomas JW,Lemieux LJ,Alben JO,Gennis RB

    更新日期:1993-10-19 00:00:00

  • Phosphatidylinositol 4,5-bisphosphate alters synaptotagmin 1 membrane docking and drives opposing bilayers closer together.

    abstract::Synaptotagmin 1 (syt1) is a synaptic vesicle-anchored membrane protein that acts as the calcium sensor for the synchronous component of neuronal exocytosis. Using site-directed spin labeling, the position and membrane interactions of a fragment of syt1 containing its two C2 domains (syt1C2AB) were assessed in bilayers...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200049c

    authors: Kuo W,Herrick DZ,Cafiso DS

    更新日期:2011-04-05 00:00:00

  • Role of the cochaperone Tpr2 in Hsp90 chaperoning.

    abstract::The molecular chaperones Hsp90 and Hsp70 are highly regulated by various cochaperones that participate in the activation of steroid receptors. Here we study Tpr2 (also called DjC7), a TPR domain-containing type III J protein implicated in steroid receptor chaperoning. We propose that Tpr2 plays a role in the Hsp90-dep...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi800770g

    authors: Moffatt NS,Bruinsma E,Uhl C,Obermann WM,Toft D

    更新日期:2008-08-05 00:00:00

  • Jeltraxin, a frog egg jelly glycoprotein, has calcium-dependent lectin properties and is related to human serum pentraxins CRP and SAP.

    abstract::The egg jelly that encapsulates amphibian eggs is essential for fertilization, but its molecular composition and roles remain largely unknown. We identified a calcium-dependent lectin from the pentraxin superfamily in the egg jelly coat from the South American burrowing frog, Lepidobatrachus laevis. This lectin, jeltr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035314o

    authors: Peavy TR,Hernandez C,Carroll EJ Jr

    更新日期:2003-11-11 00:00:00

  • Assessment of the number of free cysteines and isolation and identification of cystine-containing peptides from acetylcholine receptor.

    abstract::The number of free cysteines in each polypeptide of acetylcholine receptor from the electric organ of Torpedo californica has been assessed by alkylating the native protein with N-ethylmaleimide and iodoacetamide during homogenization of the tissue and alkylating the polypeptides with N-ethylmaleimide as they were unf...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00434a048

    authors: Kellaris KV,Ware DK,Smith S,Kyte J

    更新日期:1989-04-18 00:00:00

  • Relaxing the nicotinamide cofactor specificity of phosphite dehydrogenase by rational design.

    abstract::Homology modeling was used to identify two particular residues, Glu175 and Ala176, in Pseudomonas stutzeri phosphite dehydrogenase (PTDH) as the principal determinants of nicotinamide cofactor (NAD(+) and NADP(+)) specificity. Replacement of these two residues by site-directed mutagenesis with Ala175 and Arg176 both s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035018b

    authors: Woodyer R,van der Donk WA,Zhao H

    更新日期:2003-10-14 00:00:00

  • Tertiary and quaternary allostery in tetrameric hemoglobin from Scapharca inaequivalvis.

    abstract::The clam Scapharca inaequivalvis possesses two cooperative oxygen binding hemoglobins in its red cells: a homodimeric HbI and a heterotetrameric A2B2 HbII. Each AB dimeric half of HbII is assembled in a manner very similar to that of the well-studied HbI. This study presents crystal structures of HbII along with oxyge...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi301620x

    authors: Ronda L,Bettati S,Henry ER,Kashav T,Sanders JM,Royer WE,Mozzarelli A

    更新日期:2013-03-26 00:00:00