Identification of a localized nonsense-mediated decay pathway at the endoplasmic reticulum.

Abstract:

:Nonsense-mediated decay (NMD) is a translation-dependent RNA quality control mechanism that occurs in the cytoplasm. However, it is unknown how NMD regulates the stability of RNAs translated at the endoplasmic reticulum (ER). Here, we identify a localized NMD pathway dedicated to ER-translated mRNAs. We previously identified NBAS, a component of the Syntaxin 18 complex involved in Golgi-to-ER trafficking, as a novel NMD factor. Furthermore, we show that NBAS fulfills an independent function in NMD. This ER-NMD pathway requires the interaction of NBAS with the core NMD factor UPF1, which is partially localized at the ER in the proximity of the translocon. NBAS and UPF1 coregulate the stability of ER-associated transcripts, in particular those associated with the cellular stress response. We propose a model where NBAS recruits UPF1 to the membrane of the ER and activates an ER-dedicated NMD pathway, thus providing an ER-protective function by ensuring quality control of ER-translated mRNAs.

journal_name

Genes Dev

journal_title

Genes & development

authors

Longman D,Jackson-Jones KA,Maslon MM,Murphy LC,Young RS,Stoddart JJ,Hug N,Taylor MS,Papadopoulos DK,Cáceres JF

doi

10.1101/gad.338061.120

subject

Has Abstract

pub_date

2020-08-01 00:00:00

pages

1075-1088

issue

15-16

eissn

0890-9369

issn

1549-5477

pii

gad.338061.120

journal_volume

34

pub_type

杂志文章
  • MASTR directs MyoD-dependent satellite cell differentiation during skeletal muscle regeneration.

    abstract::In response to skeletal muscle injury, satellite cells, which function as a myogenic stem cell population, become activated, expand through proliferation, and ultimately fuse with each other and with damaged myofibers to promote muscle regeneration. Here, we show that members of the Myocardin family of transcriptional...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.179663.111

    authors: Mokalled MH,Johnson AN,Creemers EE,Olson EN

    更新日期:2012-01-15 00:00:00

  • Dual mechanisms prevent premature chromosome segregation during meiosis.

    abstract::In meiosis I, homologous chromosomes pair and then attach to the spindle so that the homologs can be pulled apart at anaphase I. The segregation of homologs before pairing would be catastrophic. We describe two mechanisms that prevent this. First, in early meiosis, Ipl1, the budding yeast homolog of the mammalian Auro...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.227454.113

    authors: Kim S,Meyer R,Chuong H,Dawson DS

    更新日期:2013-10-01 00:00:00

  • Myc family oncoproteins function through a common pathway to transform normal cells in culture: cross-interference by Max and trans-acting dominant mutants.

    abstract::The myc family of cellular oncogenes encodes three highly related nuclear phosphoproteins (c-Myc, N-Myc, and L-Myc) that are believed to function as sequence-specific transcription factors capable of regulating genes important in cellular growth and differentiation. Current evidence indicates that Myc family proteins ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.6.8.1480

    authors: Mukherjee B,Morgenbesser SD,DePinho RA

    更新日期:1992-08-01 00:00:00

  • Uniform gene expression in embryos is achieved by temporal averaging of transcription noise.

    abstract::Transcription is often stochastic. This is seemingly incompatible with the importance of gene expression during development. Here we show that during zebrafish embryogenesis, transcription activation is stochastic due to (1) genes acquiring transcriptional competence at different times in different cells, (2) differen...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.302935.117

    authors: Stapel LC,Zechner C,Vastenhouw NL

    更新日期:2017-08-15 00:00:00

  • Cellular projections from sensory hair cells form polarity-specific scaffolds during synaptogenesis.

    abstract::The assembly of a nervous system requires the extension of axons and dendrites to specific regions where they are matched with appropriate synaptic targets. Although the cues that guide long-range outgrowth have been characterized extensively, additional mechanisms are required to explain short-range guidance in neura...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.259838.115

    authors: Dow E,Siletti K,Hudspeth AJ

    更新日期:2015-05-15 00:00:00

  • Identification of cis-acting sites for condensin loading onto budding yeast chromosomes.

    abstract::Eukaryotic chromosomes reach their stable rod-shaped appearance in mitosis in a reaction dependent on the evolutionarily conserved condensin complex. Little is known about how and where condensin associates with chromosomes. Here, we analyze condensin binding to budding yeast chromosomes using high-resolution oligonuc...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1675708

    authors: D'Ambrosio C,Schmidt CK,Katou Y,Kelly G,Itoh T,Shirahige K,Uhlmann F

    更新日期:2008-08-15 00:00:00

  • Dorsal and neural expression of a tyrosine kinase-related Drosophila gene during embryonic development.

    abstract::Sequence analysis of an embryonic transcript of Drosophila predicts a tyrosine protein kinase-related gene. The prediction is based on several protein domains that are homologous to the functional domains of kinase-related oncogenes and several serine, threonine, and tyrosine protein kinases. For this reason, we named...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1.8.862

    authors: Haller J,Côté S,Brönner G,Jäckle H

    更新日期:1987-10-01 00:00:00

  • The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system.

    abstract::Interruption of translation in Escherichia coli can lead to the addition of an 11-residue carboxy-terminal peptide tail to the nascent chain. This modification is mediated by SsrA RNA (also called 10Sa RNA and tmRNA) and marks the tagged polypeptide for proteolysis. Degradation in vivo of lambda repressor amino-termin...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.12.9.1338

    authors: Gottesman S,Roche E,Zhou Y,Sauer RT

    更新日期:1998-05-01 00:00:00

  • ICP27 mediates HSV RNA export by shuttling through a leucine-rich nuclear export signal and binding viral intronless RNAs through an RGG motif.

    abstract::Infection of metazoan cells with some viruses alters the balance of cellular mRNA export to favor viral RNA export and to retain cellular transcripts in the nucleus. Here, evidence is presented to show that the herpes simplex virus 1 (HSV-1) essential regulatory protein ICP27, which inhibits host cell-splicing, result...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.12.6.868

    authors: Sandri-Goldin RM

    更新日期:1998-03-15 00:00:00

  • A Drosophila rRNA gene located in euchromatin is active in transcription and nucleolus formation.

    abstract::P-element transformants of a single rRNA gene (rDNA) were used to investigate the relationship between the organization of the nucleolus organizer (NO) and rDNA function in Drosophila melanogaster. In situ hybridization to rRNA in polytene nuclei of salivary glands demonstrated that an rRNA gene can be transcribed at ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.2.12b.1745

    authors: Karpen GH,Schaefer JE,Laird CD

    更新日期:1988-12-01 00:00:00

  • Fis binding to the recombinational enhancer of the Hin DNA inversion system.

    abstract::The recombinational enhancer of the Hin inversion system in Salmonella stimulates recombination in vitro 150-fold in the presence of the Escherichia coli host factor Fis. To gain an understanding of the roles of the enhancer and Fis in stimulating the Hin-mediated inversion reaction, we have used nuclease and chemical...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1.8.762

    authors: Bruist MF,Glasgow AC,Johnson RC,Simon MI

    更新日期:1987-10-01 00:00:00

  • The Caenorhabditis elegans SOMI-1 zinc finger protein and SWI/SNF promote regulation of development by the mir-84 microRNA.

    abstract::Hundreds of microRNAs (miRNAs) have been discovered in metazoans and plants, and understanding of their biogenesis has advanced dramatically; however, relatively little is known about the cofactors necessary for miRNA regulation of target gene expression. In Caenorhabditis elegans, the conserved miRNA let-7 and its pa...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.17153811

    authors: Hayes GD,Riedel CG,Ruvkun G

    更新日期:2011-10-01 00:00:00

  • Dynamic expression and essential functions of Hes7 in somite segmentation.

    abstract::The basic helix-loop-helix (bHLH) gene Hes7, a putative Notch effector, encodes a transcriptional repressor. Here, we found that Hes7 expression oscillates in 2-h cycles in the presomitic mesoderm (PSM). In Hes7-null mice, somites are not properly segmented and their anterior-posterior polarity is disrupted. As a resu...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.930601

    authors: Bessho Y,Sakata R,Komatsu S,Shiota K,Yamada S,Kageyama R

    更新日期:2001-10-15 00:00:00

  • ZNF445 is a primary regulator of genomic imprinting.

    abstract::Genomic imprinting is an epigenetic process regulated by germline-derived DNA methylation, causing parental origin-specific monoallelic gene expression. Zinc finger protein 57 (ZFP57) is critical for maintenance of this epigenetic memory during post-fertilization reprogramming, yet incomplete penetrance of ZFP57 mutat...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.320069.118

    authors: Takahashi N,Coluccio A,Thorball CW,Planet E,Shi H,Offner S,Turelli P,Imbeault M,Ferguson-Smith AC,Trono D

    更新日期:2019-01-01 00:00:00

  • The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures.

    abstract::The mammalian high mobility group proteins HMG1 and HMG2 are abundant, chromatin-associated proteins whose cellular function is not known. In this study we show that these proteins can substitute for the prokaryotic DNA-bending protein HU in promoting the assembly of the Hin invertasome, an intermediate structure in H...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.7.8.1521

    authors: Paull TT,Haykinson MJ,Johnson RC

    更新日期:1993-08-01 00:00:00

  • On the role of homologous sequences in chromosomal rearrangements.

    abstract::Deletions and other chromosomal rearrangements can be generated by recombination between repeated sequences. It has been shown in a number of systems that the probability of exchange or gene conversion decreases with increasing distance between repeats. This paper examines the question of how repeats find each other, ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.2.12b.1800

    authors: Singer BS

    更新日期:1988-12-01 00:00:00

  • Bipartite stimulatory action of the Hop2-Mnd1 complex on the Rad51 recombinase.

    abstract::The HOP2 and MND1 genes are indispensable for meiotic recombination. The products of these genes associate to form a stable heterodimeric complex that binds DNA and stimulates the recombinase activity of Rad51 and Dmc1. Here we conduct molecular studies to delineate the action mechanism of the Hop2-Mnd1 complex. We pr...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1563007

    authors: Chi P,San Filippo J,Sehorn MG,Petukhova GV,Sung P

    更新日期:2007-07-15 00:00:00

  • The crystal structure of DR6 in complex with the amyloid precursor protein provides insight into death receptor activation.

    abstract::The amyloid precursor protein (APP) has garnered considerable attention due to its genetic links to Alzheimer's disease. Death receptor 6 (DR6) was recently shown to bind APP via the protein extracellular regions, stimulate axonal pruning, and inhibit synapse formation. Here, we report the crystal structure of the DR6...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.257675.114

    authors: Xu K,Olsen O,Tzvetkova-Robev D,Tessier-Lavigne M,Nikolov DB

    更新日期:2015-04-15 00:00:00

  • 3' end formation of pre-mRNA and phosphorylation of Ser2 on the RNA polymerase II CTD are reciprocally coupled in human cells.

    abstract::3' end formation of pre-mRNAs is coupled to their transcription via the C-terminal domain (CTD) of RNA polymerase II (Pol II). Nearly all protein-coding transcripts are matured by cleavage and polyadenylation (CPA), which is frequently misregulated in disease. Understanding how transcription is coordinated with CPA in...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.231274.113

    authors: Davidson L,Muniz L,West S

    更新日期:2014-02-15 00:00:00

  • PPARγ is a nexus controlling alternative activation of macrophages via glutamine metabolism.

    abstract::The nuclear receptor peroxisome proliferator-activated receptor γ (PPARγ) is known to regulate lipid metabolism in many tissues, including macrophages. Here we report that peritoneal macrophage respiration is enhanced by rosiglitazone, an activating PPARγ ligand, in a PPARγ-dependent manner. Moreover, PPARγ is require...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.312355.118

    authors: Nelson VL,Nguyen HCB,Garcìa-Cañaveras JC,Briggs ER,Ho WY,DiSpirito JR,Marinis JM,Hill DA,Lazar MA

    更新日期:2018-08-01 00:00:00

  • Saccharomyces cerevisiae cAMP-dependent protein kinase controls entry into stationary phase through the Rim15p protein kinase.

    abstract::The Saccharomyces cerevisiae protein kinase Rim15p was identified previously as a stimulator of meiotic gene expression. Here, we show that loss of Rim15p causes an additional pleiotropic phenotype in cells grown to stationary phase on rich medium; this phenotype includes defects in trehalose and glycogen accumulation...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.12.18.2943

    authors: Reinders A,Bürckert N,Boller T,Wiemken A,De Virgilio C

    更新日期:1998-09-15 00:00:00

  • The mouse homolog of Drosophila Vasa is required for the development of male germ cells.

    abstract::Restricted expression of a mouse Vasa homolog gene (Mvh) expression is first detected in primordial germ cells (PGCs) after colonization of the genital ridges. Subsequently, Mvh is maintained until postmeiotic germ cells are formed. Here, we demonstrate that male mice homozygous for a targeted mutation of Mvh exhibit ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:

    authors: Tanaka SS,Toyooka Y,Akasu R,Katoh-Fukui Y,Nakahara Y,Suzuki R,Yokoyama M,Noce T

    更新日期:2000-04-01 00:00:00

  • TopBP1 activates ATR through ATRIP and a PIKK regulatory domain.

    abstract::The ATR (ATM and Rad3-related) kinase and its regulatory partner ATRIP (ATR-interacting protein) coordinate checkpoint responses to DNA damage and replication stress. TopBP1 functions as a general activator of ATR. However, the mechanism by which TopBP1 activates ATR is unknown. Here, we show that ATRIP contains a Top...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1666208

    authors: Mordes DA,Glick GG,Zhao R,Cortez D

    更新日期:2008-06-01 00:00:00

  • Restriction of the activity of the recombination site dif to a small zone of the Escherichia coli chromosome.

    abstract::The recombination site dif is the target on the Escherichia coli chromosome of the site-specific recombinases XerC and XerD. The dif/XerC-D system plays a role during the cell cycle, probably by favoring sister chromosome monomerization or separation. A phenomenon of regional control over dif activity, also analyzed i...

    journal_title:Genes & development

    pub_type: 评论,杂志文章

    doi:10.1101/gad.10.9.1152

    authors: Cornet F,Louarn J,Patte J,Louarn JM

    更新日期:1996-05-01 00:00:00

  • Homozygosity for prion protein alleles encoding glutamine-171 renders sheep susceptible to natural scrapie.

    abstract::Natural scrapie has been viewed both as a recessive trait and as a contagious disease modulated by a host locus. To address this conundrum, we determined the structure of the sheep prion protein (PrP) gene, which contains three exons and extends over 20 kb of DNA. In the United States 86.4% of scrapie cases occur in S...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.8.8.959

    authors: Westaway D,Zuliani V,Cooper CM,Da Costa M,Neuman S,Jenny AL,Detwiler L,Prusiner SB

    更新日期:1994-04-15 00:00:00

  • Null mutation of the prolactin receptor gene produces multiple reproductive defects in the mouse.

    abstract::Mice carrying a germ-line null mutation of the prolactin receptor gene have been produced by gene targeting in embryonic stem cells. Heterozygous females showed almost complete failure of lactation attributable to greatly reduced mammary gland development after their first, but not subsequent, pregnancies. Homozygous ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.11.2.167

    authors: Ormandy CJ,Camus A,Barra J,Damotte D,Lucas B,Buteau H,Edery M,Brousse N,Babinet C,Binart N,Kelly PA

    更新日期:1997-01-15 00:00:00

  • An ERK2 docking site in the Pointed domain distinguishes a subset of ETS transcription factors.

    abstract::The ETS transcription factors perform distinct biological functions despite conserving a highly similar DNA-binding domain. One distinguishing property of a subset of ETS proteins is a conserved region of 80 amino acids termed the Pointed (PNT) domain. Using enzyme kinetics we determined that the Ets-1 PNT domain cont...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.950902

    authors: Seidel JJ,Graves BJ

    更新日期:2002-01-01 00:00:00

  • Identification and molecular characterization of cellular factors required for glucocorticoid receptor-mediated mRNA decay.

    abstract::Glucocorticoid (GC) receptor (GR) has been shown recently to bind a subset of mRNAs and elicit rapid mRNA degradation. However, the molecular details of GR-mediated mRNA decay (GMD) remain unclear. Here, we demonstrate that GMD triggers rapid degradation of target mRNAs in a translation-independent and exon junction c...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.286484.116

    authors: Park OH,Park J,Yu M,An HT,Ko J,Kim YK

    更新日期:2016-09-15 00:00:00

  • Fission yeast genes that confer resistance to staurosporine encode an AP-1-like transcription factor and a protein kinase related to the mammalian ERK1/MAP2 and budding yeast FUS3 and KSS1 kinases.

    abstract::Staurosporine, a potent inhibitor of protein kinase C, arrests fission yeast cell elongation specifically at a stage immediately after cell division. We isolated two genes, which, when carried on multicopy plasmids, confer drug resistance in fission yeast. One, spk1+, encodes a protein kinase highly similar (54% ident...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.5.1.60

    authors: Toda T,Shimanuki M,Yanagida M

    更新日期:1991-01-01 00:00:00

  • Loss of Apc in vivo immediately perturbs Wnt signaling, differentiation, and migration.

    abstract::Although Apc is well characterized as a tumor-suppressor gene in the intestine, the precise mechanism of this suppression remains to be defined. Using a novel inducible Ahcre transgenic line in conjunction with a loxP-flanked Apc allele we, show that loss of Apc acutely activates Wnt signaling through the nuclear accu...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.287404

    authors: Sansom OJ,Reed KR,Hayes AJ,Ireland H,Brinkmann H,Newton IP,Batlle E,Simon-Assmann P,Clevers H,Nathke IS,Clarke AR,Winton DJ

    更新日期:2004-06-15 00:00:00