PPARγ is a nexus controlling alternative activation of macrophages via glutamine metabolism.

Abstract:

:The nuclear receptor peroxisome proliferator-activated receptor γ (PPARγ) is known to regulate lipid metabolism in many tissues, including macrophages. Here we report that peritoneal macrophage respiration is enhanced by rosiglitazone, an activating PPARγ ligand, in a PPARγ-dependent manner. Moreover, PPARγ is required for macrophage respiration even in the absence of exogenous ligand. Unexpectedly, the absence of PPARγ dramatically affects the oxidation of glutamine. Both glutamine and PPARγ have been implicated in alternative activation (AA) of macrophages, and PPARγ was required for interleukin 4 (IL4)-dependent gene expression and stimulation of macrophage respiration. Indeed, unstimulated macrophages lacking PPARγ contained elevated levels of the inflammation-associated metabolite itaconate and express a proinflammatory transcriptome that, remarkably, phenocopied that of macrophages depleted of glutamine. Thus, PPARγ functions as a checkpoint, guarding against inflammation, and is permissive for AA by facilitating glutamine metabolism. However, PPARγ expression is itself markedly increased by IL4. This suggests that PPARγ functions at the center of a feed-forward loop that is central to AA of macrophages.

journal_name

Genes Dev

journal_title

Genes & development

authors

Nelson VL,Nguyen HCB,Garcìa-Cañaveras JC,Briggs ER,Ho WY,DiSpirito JR,Marinis JM,Hill DA,Lazar MA

doi

10.1101/gad.312355.118

subject

Has Abstract

pub_date

2018-08-01 00:00:00

pages

1035-1044

issue

15-16

eissn

0890-9369

issn

1549-5477

pii

gad.312355.118

journal_volume

32

pub_type

杂志文章
  • WD40 protein FBW5 promotes ubiquitination of tumor suppressor TSC2 by DDB1-CUL4-ROC1 ligase.

    abstract::Tuberous sclerosis (TSC) is an autosomal dominant disease characterized by hamartoma formation in various organs and is caused by mutations targeting either the TSC1 or TSC2 genes. TSC1 and TSC2 proteins form a functionally interdependent dimeric complex. Phosphorylation of either TSC subunit by different kinases regu...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1624008

    authors: Hu J,Zacharek S,He YJ,Lee H,Shumway S,Duronio RJ,Xiong Y

    更新日期:2008-04-01 00:00:00

  • Migrations of the Caenorhabditis elegans HSNs are regulated by egl-43, a gene encoding two zinc finger proteins.

    abstract::During embryonic development, the two Caenorhabditis elegans HSN motor neurons migrate from their birthplace in the tail to positions near the middle of the embryo. Here, we demonstrate that of all cells that undergo long-range migrations, only the HSNs are affected in animals that lack function of the egl-43 gene. We...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.7.11.2097

    authors: Garriga G,Guenther C,Horvitz HR

    更新日期:1993-11-01 00:00:00

  • Characterization of a murine homeo box gene, Hox-2.6, related to the Drosophila Deformed gene.

    abstract::The Hox-2 locus on chromosome 11 represents one of the major clusters of homeo-box-containing genes in the mouse. We have identified two new members (Hox-2.6 and Hox-2.7), which form part of this cluster of seven linked genes, and it appears that the Hox-2 locus is related by duplication and divergence to at least one...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.2.11.1424

    authors: Graham A,Papalopulu N,Lorimer J,McVey JH,Tuddenham EG,Krumlauf R

    更新日期:1988-11-01 00:00:00

  • Cooperative recruitment of Yan via a high-affinity ETS supersite organizes repression to confer specificity and robustness to cardiac cell fate specification.

    abstract::Cis-regulatory modules (CRMs) are defined by unique combinations of transcription factor-binding sites. Emerging evidence suggests that the number, affinity, and organization of sites play important roles in regulating enhancer output and, ultimately, gene expression. Here, we investigate how the cis-regulatory logic ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.307132.117

    authors: Boisclair Lachance JF,Webber JL,Hong L,Dinner AR,Rebay I

    更新日期:2018-03-01 00:00:00

  • Sarkosyl defines three intermediate steps in transcription initiation by RNA polymerase III: application to stimulation of transcription by E1A.

    abstract::We used Sarkosyl to analyze steps along the pathway of transcription initiation by RNA polymerase III. Sarkosyl (0.015%) inhibited transcription when present prior to incubation of RNA polymerase III, TFIIIB, and TFIIIC with the VAI gene, whereas it had no detectable effect on initiation or reinitiation of transcripti...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.4.4.646

    authors: Kovelman R,Roeder RG

    更新日期:1990-04-01 00:00:00

  • miR-424(322)/503 is a breast cancer tumor suppressor whose loss promotes resistance to chemotherapy.

    abstract::The female mammary gland is a very dynamic organ that undergoes continuous tissue remodeling during adulthood. Although it is well established that the number of menstrual cycles and pregnancy (in this case transiently) increase the risk of breast cancer, the reasons are unclear. Growing clinical and experimental evid...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.292318.116

    authors: Rodriguez-Barrueco R,Nekritz EA,Bertucci F,Yu J,Sanchez-Garcia F,Zeleke TZ,Gorbatenko A,Birnbaum D,Ezhkova E,Cordon-Cardo C,Finetti P,Llobet-Navas D,Silva JM

    更新日期:2017-03-15 00:00:00

  • Nascent-seq indicates widespread cotranscriptional pre-mRNA splicing in Drosophila.

    abstract::To determine the prevalence of cotranscriptional splicing in Drosophila, we sequenced nascent RNA transcripts from Drosophila S2 cells as well as from Drosophila heads. Eighty-seven percent of the introns assayed manifest >50% cotranscriptional splicing. The remaining 13% are cotranscriptionally spliced poorly or slow...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.178962.111

    authors: Khodor YL,Rodriguez J,Abruzzi KC,Tang CH,Marr MT 2nd,Rosbash M

    更新日期:2011-12-01 00:00:00

  • Rev-erbα and Rev-erbβ coordinately protect the circadian clock and normal metabolic function.

    abstract::The nuclear receptor Rev-erbα regulates circadian rhythm and metabolism, but its effects are modest and it has been considered to be a secondary regulator of the cell-autonomous clock. Here we report that depletion of Rev-erbα together with closely related Rev-erbβ has dramatic effects on the cell-autonomous clock as ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.186858.112

    authors: Bugge A,Feng D,Everett LJ,Briggs ER,Mullican SE,Wang F,Jager J,Lazar MA

    更新日期:2012-04-01 00:00:00

  • Molecular genetics of aristaless, a prd-type homeo box gene involved in the morphogenesis of proximal and distal pattern elements in a subset of appendages in Drosophila.

    abstract::Viable aristaless (al) mutations of Drosophila affect pattern elements at both ends of the proximodistal axis in a subset of adult appendages. The al gene has been cloned and identified by P-element-mediated germ-line transformation with a genomic DNA fragment, which rescues a lethal mutation of al as well as aspects ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.7.1.114

    authors: Schneitz K,Spielmann P,Noll M

    更新日期:1993-01-01 00:00:00

  • Binding sites for transcription factor NTF-1/Elf-1 contribute to the ventral repression of decapentaplegic.

    abstract::The Dorsal morphogen is a transcription factor that activates some genes and represses others to establish multiple domains of gene expression along the dorsal/ventral axis of the early Drosophila embryo. Repression by Dorsal appears to require accessory proteins that bind to corepression elements in Dorsal-dependent ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.9.24.3177

    authors: Huang JD,Dubnicoff T,Liaw GJ,Bai Y,Valentine SA,Shirokawa JM,Lengyel JA,Courey AJ

    更新日期:1995-12-15 00:00:00

  • Caenorhabditis elegans sex-determining protein FEM-2 is a protein phosphatase that promotes male development and interacts directly with FEM-3.

    abstract::Male sexual development in the nematode Caenorhabditis elegans requires the genes fem-1, fem-2, and fem-3. The current model of sex determination portrays the FEM proteins as components of a novel signal transduction pathway, but the mechanisms involved in signaling through the pathway are not understood. We report th...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.10.18.2314

    authors: Chin-Sang ID,Spence AM

    更新日期:1996-09-15 00:00:00

  • The Rho-linked mental retardation protein oligophrenin-1 controls synapse maturation and plasticity by stabilizing AMPA receptors.

    abstract::Oligophrenin-1 (OPHN1) encodes a Rho-GTPase-activating protein (Rho-GAP) whose loss of function has been associated with X-linked mental retardation (MR). The pathophysiological role of OPHN1, however, remains poorly understood. Here we show that OPHN1 through its Rho-GAP activity plays a critical role in the activity...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1783809

    authors: Nadif Kasri N,Nakano-Kobayashi A,Malinow R,Li B,Van Aelst L

    更新日期:2009-06-01 00:00:00

  • Psidin, a conserved protein that regulates protrusion dynamics and cell migration.

    abstract::Dynamic assembly and disassembly of actin filaments is a major driving force for cell movements. Border cells in the Drosophila ovary provide a simple and genetically tractable model to study the mechanisms regulating cell migration. To identify new genes that regulate cell movement in vivo, we screened lethal mutatio...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.2028611

    authors: Kim JH,Cho A,Yin H,Schafer DA,Mouneimne G,Simpson KJ,Nguyen KV,Brugge JS,Montell DJ

    更新日期:2011-04-01 00:00:00

  • p53 domains: identification and characterization of two autonomous DNA-binding regions.

    abstract::We have investigated the DNA-binding, oligomerization, and trans-activation functions of isolated segments of murine p53. We find that p53 has two autonomous DNA-binding regions. One domain, from amino acid 280 to 390, forms stable tetramers and binds DNA nonspecifically. The biological significance, if any, of this D...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.7.12b.2575

    authors: Wang Y,Reed M,Wang P,Stenger JE,Mayr G,Anderson ME,Schwedes JF,Tegtmeyer P

    更新日期:1993-12-01 00:00:00

  • Nucleocytoplasmic transport: the influenza virus NS1 protein regulates the transport of spliced NS2 mRNA and its precursor NS1 mRNA.

    abstract::Influenza virus unspliced NS1 mRNA, like retroviral pre-mRNAs, is efficiently exported from the nucleus and translated in the cytoplasm of infected cells. With human immunodeficiency virus (HIV), the transport of viral pre-mRNAs is facilitated by the viral Rev protein. We tested the possibility that the influenza viru...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.6.2.255

    authors: Alonso-Caplen FV,Nemeroff ME,Qiu Y,Krug RM

    更新日期:1992-02-01 00:00:00

  • HBP1: a HMG box transcriptional repressor that is targeted by the retinoblastoma family.

    abstract::A prominent feature of cell differentiation is the initiation and maintenance of an irreversible cell cycle arrest with the complex involvement of the retinoblastoma (RB) family (RB, p130, p107). We have isolated the HBP1 transcriptional repressor as a potential target of the RB family in differentiated cells. By homo...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.11.3.383

    authors: Tevosian SG,Shih HH,Mendelson KG,Sheppard KA,Paulson KE,Yee AS

    更新日期:1997-02-01 00:00:00

  • miR760 regulates ATXN1 levels via interaction with its 5' untranslated region.

    abstract::Identifying modifiers of dosage-sensitive genes involved in neurodegenerative disorders is imperative to discover novel genetic risk factors and potential therapeutic entry points. In this study, we focus on Ataxin-1 (ATXN1), a dosage-sensitive gene involved in the neurodegenerative disease spinocerebellar ataxia type...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.339317.120

    authors: Nitschke L,Tewari A,Coffin SL,Xhako E,Pang K,Gennarino VA,Johnson JL,Blanco FA,Liu Z,Zoghbi HY

    更新日期:2020-09-01 00:00:00

  • Ovarian follicle cell enhancers from the Drosophila yolk protein genes: different segments of one enhancer have different cell-type specificities that interact to give normal expression.

    abstract::This paper examines ovarian transcription of the divergently oriented yolk protein genes 1 and 2 (yp1 and yp2) of Drosophila melanogaster. We report germ line transformation results demonstrating that yp1 and yp2 are transcribed in the same subpopulations of ovarian follicle cells. Our results show that this expressio...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.4.4.613

    authors: Logan SK,Wensink PC

    更新日期:1990-04-01 00:00:00

  • Genomic instability and endoreduplication triggered by RAD17 deletion.

    abstract::Cell cycle checkpoints are critical for genomic stability. Rad17, a component of the checkpoint clamp loader complex (Rad17/Rfc2-5), is required for the response to DNA damage and replication stress. To explore the role of Rad17 in the maintenance of genomic integrity, we established somatic conditional alleles of RAD...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1065103

    authors: Wang X,Zou L,Zheng H,Wei Q,Elledge SJ,Li L

    更新日期:2003-04-15 00:00:00

  • A protein that shuttles between the nucleus and the cytoplasm is an important mediator of RNA export.

    abstract::The connection between RNA and protein export from the nucleus was examined in the budding yeast Saccharomyces cerevisiae. NPL3 encodes an RNA-binding protein that shuttles in and out of the nucleus. Export of poly(A)+ RNA has been shown previously to be blocked in np13-1 mutants. To understand the role of Np13p in RN...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.10.10.1233

    authors: Lee MS,Henry M,Silver PA

    更新日期:1996-05-15 00:00:00

  • SMG6 interacts with the exon junction complex via two conserved EJC-binding motifs (EBMs) required for nonsense-mediated mRNA decay.

    abstract::Nonsense-mediated mRNA decay (NMD) is a quality control mechanism that detects and degrades mRNAs containing premature stop codons (PTCs). In vertebrates, PTCs trigger efficient NMD when located upstream of an exon junction complex (EJC). Degradation of PTC-containing mRNAs requires the endonucleolytic activity of SMG...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.604610

    authors: Kashima I,Jonas S,Jayachandran U,Buchwald G,Conti E,Lupas AN,Izaurralde E

    更新日期:2010-11-01 00:00:00

  • Specificity of single LIM motifs in targeting and LIM/LIM interactions in situ.

    abstract::The LIM motif defines a double zinc finger structure found in proteins involved in cell fate determination and growth control. LIM proteins, which include LIM homeo domain, LIM kinase, focal adhesion, and LIM-only proteins, usually contain two or more LIM motifs clustered at their amino- or carboxy-terminal end. At pr...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.10.3.289

    authors: Arber S,Caroni P

    更新日期:1996-02-01 00:00:00

  • Differential requirements for cell-specific elastase I enhancer domains in transfected cells and transgenic mice.

    abstract::The 134-bp enhancer region of the pancreatic elastase I gene is sufficient to direct pancreatic acinar cell-specific transcription in transgenic mice and in transfected cells in culture. Ten-base-pair scanner mutations in three separate enhancer domains that inactivate enhancer function in transfected pancreatic cells...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.3.5.687

    authors: Swift GH,Kruse F,MacDonald RJ,Hammer RE

    更新日期:1989-05-01 00:00:00

  • Drosophila lacking microRNA miR-278 are defective in energy homeostasis.

    abstract::The mechanisms that control energy homeostasis and tissue growth during development are closely linked through the insulin signal transduction pathway. Changes in the level of insulin and other hormones reflect the nutritional status of the animal to control circulating sugar levels and fat metabolism. Systemic defect...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.374406

    authors: Teleman AA,Maitra S,Cohen SM

    更新日期:2006-02-15 00:00:00

  • The Drosophila neurogenic locus mastermind encodes a nuclear protein unusually rich in amino acid homopolymers.

    abstract::The neurogenic loci of Drosophila are required for proper partitioning of ectodermal cells into epidermal versus neural lineages. The loci appear to encode components of a developmental pathway involving cellular communication. In an effort to understand the role of the neurogenic locus mastermind in these processes, ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.4.10.1688

    authors: Smoller D,Friedel C,Schmid A,Bettler D,Lam L,Yedvobnick B

    更新日期:1990-10-01 00:00:00

  • Hap2-Ino80-facilitated transcription promotes de novo establishment of CENP-A chromatin.

    abstract::Centromeres are maintained epigenetically by the presence of CENP-A, an evolutionarily conserved histone H3 variant, which directs kinetochore assembly and hence centromere function. To identify factors that promote assembly of CENP-A chromatin, we affinity-selected solubilized fission yeast CENP-ACnp1 chromatin. All ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.332536.119

    authors: Singh PP,Shukla M,White SA,Lafos M,Tong P,Auchynnikava T,Spanos C,Rappsilber J,Pidoux AL,Allshire RC

    更新日期:2020-02-01 00:00:00

  • Molecular insights into plant cell proliferation disturbance by Agrobacterium protein 6b.

    abstract::The Agrobacterium Ti plasmid (T-DNA) 6b proteins interact with many different host proteins implicated in plant cell proliferation. Here, we show that Arabidopsis plants overexpressing 6b display microRNA (miRNA) deficiency by directly targeting SERRATE and AGO1 via a specific loop fragment (residues 40-55). In additi...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1985511

    authors: Wang M,Soyano T,Machida S,Yang JY,Jung C,Chua NH,Yuan YA

    更新日期:2011-01-01 00:00:00

  • Dynamic SpoIIIE assembly mediates septal membrane fission during Bacillus subtilis sporulation.

    abstract::SpoIIIE is an FtsK-related protein that transports the forespore chromosome across the Bacillus subtilis sporulation septum. We use membrane photobleaching and protoplast assays to demonstrate that SpoIIIE is required for septal membrane fission in the presence of trapped DNA, and that DNA is transported across separa...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1925210

    authors: Fleming TC,Shin JY,Lee SH,Becker E,Huang KC,Bustamante C,Pogliano K

    更新日期:2010-06-01 00:00:00

  • MicroRNAs regulate the expression of the alternative splicing factor nPTB during muscle development.

    abstract::Alternative pre-mRNA splicing determines many changes in gene expression during development. Two regulators known to control splicing patterns during neuron and muscle differentiation are the polypyrimidine tract-binding protein (PTB) and its neuronal homolog nPTB. These proteins repress certain exons in early myoblas...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1500707

    authors: Boutz PL,Chawla G,Stoilov P,Black DL

    更新日期:2007-01-01 00:00:00

  • Nuclear receptor ERR alpha and coactivator PGC-1 beta are effectors of IFN-gamma-induced host defense.

    abstract::Macrophage activation by the proinflammatory cytokine interferon-gamma (IFN-gamma) is a critical component of the host innate response to bacterial pathogenesis. However, the precise nature of the IFN-gamma-induced activation pathway is not known. Here we show using genome-wide expression and chromatin-binding profili...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1553007

    authors: Sonoda J,Laganière J,Mehl IR,Barish GD,Chong LW,Li X,Scheffler IE,Mock DC,Bataille AR,Robert F,Lee CH,Giguère V,Evans RM

    更新日期:2007-08-01 00:00:00