Metabolic engineering of Escherichia coli for production of L-aspartate and its derivative β-alanine with high stoichiometric yield.

Abstract:

:L-aspartate is an important 4-carbon platform compound that can be used as the precursor of numerous chemical products. The bioproduction of L-aspartate directly from biomass resources is expected to provide a more cost-competitive technique route. Yet little metabolic engineering work on this matter has been carried out. In this study, we designed a shortcut pathway of L-aspartate biosynthesis in Escherichia coli, with a maximized stoichiometric yield of 2 mol/mol glucose. L-aspartate aminotransferase (AspC) was overexpressed for producing L-aspartate and coexpressed with L-aspartate-a-decarboxylase (PanD) for producing L-aspartate's derivative β-alanine. L-aspartate could only be detected after directing carbon flux towards oxaloacetate and blocking the "futile cycle" with TCA cycle. A cofactor self-sufficient system successfully improved the efficiency of AspC-catalyzing L-aspartate biosynthesis reaction, and the glucose uptake remolding capably decreased byproducts from pyruvate. More targets were modified for relieving the bottleneck during fed-batch bioconversion. As a result, 1.01 mol L-aspartate/mol glucose and 1.52 mol β-alanine/mol glucose were produced in corresponding strains respectively. Fed-batch bioconversion allowed 249 mM (33.1 g/L) L-aspartate or 424 mM (37.7 g/L) β-alanine production, respectively. The study provides a novel promising metabolic engineering route for the production of L-aspartate and its derivate chemicals using biomass resources. These results also represent the first report of the efficient bioproduction of L-aspartate directly from glucose in E. coli and the highest yield of β-alanine reported so far.

journal_name

Metab Eng

journal_title

Metabolic engineering

authors

Piao X,Wang L,Lin B,Chen H,Liu W,Tao Y

doi

10.1016/j.ymben.2019.04.012

subject

Has Abstract

pub_date

2019-07-01 00:00:00

pages

244-254

eissn

1096-7176

issn

1096-7184

pii

S1096-7176(19)30110-7

journal_volume

54

pub_type

杂志文章
  • Metabolic engineering of Amycolatopsis japonicum for optimized production of [S,S]-EDDS, a biodegradable chelator.

    abstract::The actinomycete Amycolatopsis japonicum is the producer of the chelating compound [S,S]-ethylenediamine-disuccinc acid (EDDS). [S,S]-EDDS is an isomer of ethylenediamine-tetraacetic acid (EDTA), an economically important chelating compound that suffers from an extremely poor degradability. Frequent use of the persist...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2020.04.003

    authors: Edenhart S,Denneler M,Spohn M,Doskocil E,Kavšček M,Amon T,Kosec G,Smole J,Bardl B,Biermann M,Roth M,Wohlleben W,Stegmann E

    更新日期:2020-07-01 00:00:00

  • A dynamic metabolite valve for the control of central carbon metabolism.

    abstract::Successful redirection of endogenous resources into heterologous pathways is a central tenet in the creation of efficient microbial cell factories. This redirection, however, may come at a price of poor biomass accumulation, reduced cofactor regeneration and low recombinant enzyme expression. In this study, we propose...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2012.08.006

    authors: Solomon KV,Sanders TM,Prather KL

    更新日期:2012-11-01 00:00:00

  • Down-regulation of cold-inducible RNA-binding protein does not improve hypothermic growth of Chinese hamster ovary cells producing erythropoietin.

    abstract::Discovery of the cold-inducible RNA-binding protein (CIRP) in mouse fibroblasts suggests that growth suppression at hypothermic conditions is due to an active response by the cell rather than due to passive thermal effects. To determine the effect of down-regulated CIRP expression on cell growth and erythropoietin (EP...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2006.11.003

    authors: Hong JK,Kim YG,Yoon SK,Lee GM

    更新日期:2007-03-01 00:00:00

  • Metabolic fluxes and metabolic engineering.

    abstract::Metabolic engineering is the directed improvement of cellular properties through the modification of specific biochemical reactions or the introduction of new ones, with the use of recombinant DNA technology. As such, metabolic engineering emphasizes metabolic pathway integration and relies on metabolic fluxes as dete...

    journal_title:Metabolic engineering

    pub_type: 杂志文章,评审

    doi:10.1006/mben.1998.0101

    authors: Stephanopoulos G

    更新日期:1999-01-01 00:00:00

  • Bio-based succinate from sucrose: High-resolution 13C metabolic flux analysis and metabolic engineering of the rumen bacterium Basfia succiniciproducens.

    abstract::Succinic acid is a platform chemical of recognized industrial value and accordingly faces a continuous challenge to enable manufacturing from most attractive raw materials. It is mainly produced from glucose, using microbial fermentation. Here, we explore and optimize succinate production from sucrose, a globally appl...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2017.10.003

    authors: Lange A,Becker J,Schulze D,Cahoreau E,Portais JC,Haefner S,Schröder H,Krawczyk J,Zelder O,Wittmann C

    更新日期:2017-11-01 00:00:00

  • Reversal of β-oxidative pathways for the microbial production of chemicals and polymer building blocks.

    abstract::β-Oxidation is the ubiquitous metabolic strategy to break down fatty acids. In the course of this four-step process, two carbon atoms are liberated per cycle from the fatty acid chain in the form of acetyl-CoA. However, typical β-oxidative strategies are not restricted to monocarboxylic (fatty) acid degradation only, ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章,评审

    doi:10.1016/j.ymben.2017.05.004

    authors: Kallscheuer N,Polen T,Bott M,Marienhagen J

    更新日期:2017-07-01 00:00:00

  • Enhancement of acetyl-CoA flux for photosynthetic chemical production by pyruvate dehydrogenase complex overexpression in Synechococcus elongatus PCC 7942.

    abstract::Genetic manipulation in cyanobacteria enables the direct production of valuable chemicals from carbon dioxide. However, there are still very few reports of the production of highly effective photosynthetic chemicals. Several synthetic metabolic pathways (e.g., isopropanol, acetone, isoprene, and fatty acids) have been...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2019.07.012

    authors: Hirokawa Y,Kubo T,Soma Y,Saruta F,Hanai T

    更新日期:2020-01-01 00:00:00

  • Engineering precursor flow for increased erythromycin production in Aeromicrobium erythreum.

    abstract::Metabolic engineering technology for industrial microorganisms is under development to create rational, more reliable, and more cost-effective approaches to strain improvement. Strain improvement is a critical component of the drug development process, yet the genetic basis for high production by industrial microorgan...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2004.03.003

    authors: Reeves AR,Cernota WH,Brikun IA,Wesley RK,Weber JM

    更新日期:2004-10-01 00:00:00

  • Application of 2D-TOCSY NMR to the measurement of specific(13C-enrichments in complex mixtures of 13C-labeled metabolites.

    abstract::A 2D-NMR method based on zero-quantum filtered (ZQF-) TOtal Correlation SpectroscopY (TOCSY) was applied to measure 13C-enrichments in complex mixtures of 13C-labeled metabolites generated in carbon-labeling experiments. Using ZQF-TOCSY, more than 30 13C-enrichments could be potentially measured from the analysis of a...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2007.03.001

    authors: Massou S,Nicolas C,Letisse F,Portais JC

    更新日期:2007-05-01 00:00:00

  • Physiological and genetic engineering of cytosolic redox metabolism in Saccharomyces cerevisiae for improved glycerol production.

    abstract::Previous metabolic engineering strategies for improving glycerol production by Saccharomyces cerevisiae were constrained to a maximum theoretical glycerol yield of 1 mol.(molglucose)(-1) due to the introduction of rigid carbon, ATP or redox stoichiometries. In the present study, we sought to circumvent these constrain...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2006.06.004

    authors: Geertman JM,van Maris AJ,van Dijken JP,Pronk JT

    更新日期:2006-11-01 00:00:00

  • Expanding the chemical palate of cells by combining systems biology and metabolic engineering.

    abstract::The field of Metabolic Engineering has recently undergone a transformation that has led to a rapid expansion of the chemical palate of cells. Now, it is conceivable to produce nearly any organic molecule of interest using a cellular host. Significant advances have been made in the production of biofuels, biopolymers a...

    journal_title:Metabolic engineering

    pub_type: 杂志文章,评审

    doi:10.1016/j.ymben.2012.04.006

    authors: Curran KA,Alper HS

    更新日期:2012-07-01 00:00:00

  • Deciphering flux adjustments of engineered E. coli cells during fermentation with changing growth conditions.

    abstract::Microbial fermentation conditions are dynamic, due to transcriptional induction, nutrient consumption, or changes to incubation conditions. In this study, 13C-metabolic flux analysis was used to characterize two violacein-producing E. coli strains with vastly different productivities, and to profile their metabolic ad...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2016.12.008

    authors: He L,Xiu Y,Jones JA,Baidoo EEK,Keasling JD,Tang YJ,Koffas MAG

    更新日期:2017-01-01 00:00:00

  • An engineered E.coli strain for the production of glycoglycerolipids.

    abstract::The glycolipid synthase MG517 from Mycoplasma genitalium catalyzes the glucosyl transfer from UDPGlc to diacylglycerol producing glycoglycerolipids (GGL) (Andrés et al., 2011). The enzyme was functional in E. coli accumulating GGL in the plasma membrane. A metabolic engineering strategy for GGL production was evaluate...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2012.06.001

    authors: Mora-Buyé N,Faijes M,Planas A

    更新日期:2012-09-01 00:00:00

  • Dynamic control of toxic natural product biosynthesis by an artificial regulatory circuit.

    abstract::To mimic the delicately regulated metabolism in nature for improved efficiency, artificial and customized regulatory components for dynamically controlling metabolic networks in multiple layers are essential in laboratory engineering. For this purpose, a novel regulatory component for controlling vanillin biosynthetic...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2019.12.002

    authors: Liang C,Zhang X,Wu J,Mu S,Wu Z,Jin JM,Tang SY

    更新日期:2020-01-01 00:00:00

  • Biotin-independent strains of Escherichia coli for enhanced streptavidin production.

    abstract::Biotin is an archetypal vitamin used as cofactor for carboxylation reactions found in all forms of life. However, biotin biosynthesis is an elaborate multi-enzymatic process and metabolically costly. Moreover, many industrially relevant organisms are incapable of biotin synthesis resulting in the requirement to supple...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2016.12.013

    authors: Jeschek M,Bahls MO,Schneider V,Marlière P,Ward TR,Panke S

    更新日期:2017-03-01 00:00:00

  • Metabolic engineering of Escherichia coli for the production of 5-aminovalerate and glutarate as C5 platform chemicals.

    abstract::5-Aminovalerate (5AVA) is the precursor of valerolactam, a potential building block for producing nylon 5, and is a C5 platform chemical for synthesizing 5-hydroxyvalerate, glutarate, and 1,5-pentanediol. Escherichia coli was metabolically engineered for the production of 5-aminovalerate (5AVA) and glutarate. When the...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2012.11.011

    authors: Park SJ,Kim EY,Noh W,Park HM,Oh YH,Lee SH,Song BK,Jegal J,Lee SY

    更新日期:2013-03-01 00:00:00

  • Metabolic flux rearrangement in the amino acid metabolism reduces ammonia stress in the α1-antitrypsin producing human AGE1.HN cell line.

    abstract::This study focused on metabolic changes in the neuronal human cell line AGE1.HN upon increased ammonia stress. Batch cultivations of α(1)-antitrypsin (A1AT) producing AGE1.HN cells were carried out in media with initial ammonia concentrations ranging from 0mM to 5mM. Growth, A1AT production, metabolite dynamics and fi...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2012.01.001

    authors: Priesnitz C,Niklas J,Rose T,Sandig V,Heinzle E

    更新日期:2012-03-01 00:00:00

  • Metabolic engineering of ammonium release for nitrogen-fixing multispecies microbial cell-factories.

    abstract::The biological nitrogen fixation carried out by some Bacteria and Archaea is one of the most attractive alternatives to synthetic nitrogen fertilizers. In this study we compared the effect of controlling the maximum activation state of the Azotobacter vinelandii glutamine synthase by a point mutation at the active sit...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2014.03.002

    authors: Ortiz-Marquez JC,Do Nascimento M,Curatti L

    更新日期:2014-05-01 00:00:00

  • Engineering microbes for isoprene production.

    abstract::Isoprene is facing a growing global market due to its wide industrial applications. Current industrial production of isoprene is almost entirely petroleum-based, which is influenced by the shrinking C5 supply, while the natural emission of isoprene is predominantly contributed by plants. To bridge the need gap, a high...

    journal_title:Metabolic engineering

    pub_type: 杂志文章,评审

    doi:10.1016/j.ymben.2016.07.005

    authors: Ye L,Lv X,Yu H

    更新日期:2016-11-01 00:00:00

  • Metabolic flux analysis of hepatocyte function in hormone- and amino acid-supplemented plasma.

    abstract::Understanding the metabolic and regulatory pathways of hepatocytes is important for biotechnological applications involving liver cells. Previous attempts to culture hepatocytes in plasma yielded poor functional results. Recently we reported that hormone (insulin and hydrocortisone) and amino acid supplementation redu...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/s1096-7176(02)00011-3

    authors: Chan C,Berthiaume F,Lee K,Yarmush ML

    更新日期:2003-01-01 00:00:00

  • Understanding carotenoid metabolism as a necessity for genetic engineering of crop plants.

    abstract::As a proof of concept, the qualitative and quantitative engineering of carotenoid formation has been achieved in crop plants. Successful reports in tomato, potato, rice, and canola all describe the enhancement of carotenoid with nutritional value, while in model systems such as tobacco and Arabidopsis the engineering ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章,评审

    doi:10.1016/j.ymben.2006.01.005

    authors: Sandmann G,Römer S,Fraser PD

    更新日期:2006-07-01 00:00:00

  • Consolidated conversion of protein waste into biofuels and ammonia using Bacillus subtilis.

    abstract::The non-recyclable use of nitrogen fertilizers in microbial production of fuels and chemicals remains environmentally detrimental. Conversion of protein wastes into biofuels and ammonia by engineering nitrogen flux in Escherichia coli has been demonstrated as a method to reclaim reduced-nitrogen and curb its environme...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2014.02.007

    authors: Choi KY,Wernick DG,Tat CA,Liao JC

    更新日期:2014-05-01 00:00:00

  • Engineered citrate synthase alters Acetate Accumulation in Escherichia coli.

    abstract::Metabolic engineering is used to improve titers, yields and generation rates for biochemical products in host microbes such as Escherichia coli. A wide range of biochemicals are derived from the central carbon metabolite acetyl-CoA, and the largest native drain of acetyl-CoA in most microbes including E. coli is entry...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2020.06.006

    authors: Tovilla-Coutiño DB,Momany C,Eiteman MA

    更新日期:2020-09-01 00:00:00

  • Review of methods to probe single cell metabolism and bioenergetics.

    abstract::Single cell investigations have enabled unexpected discoveries, such as the existence of biological noise and phenotypic switching in infection, metabolism and treatment. Herein, we review methods that enable such single cell investigations specific to metabolism and bioenergetics. Firstly, we discuss how to isolate a...

    journal_title:Metabolic engineering

    pub_type: 杂志文章,评审

    doi:10.1016/j.ymben.2014.09.007

    authors: Vasdekis AE,Stephanopoulos G

    更新日期:2015-01-01 00:00:00

  • Metabolic flux analysis in Synechocystis using isotope distribution from 13C-labeled glucose.

    abstract::Using the carbon isotope labeling technique, the response of cyanobacterial central carbon metabolism to the change in environmental conditions was investigated. Synechocystis was grown in the heterotrophic and mixotrophic cultures fed with 13C-labeled glucose. The labeling patterns of the amino acids in biomass hydro...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1006/mben.2002.0226

    authors: Yang C,Hua Q,Shimizu K

    更新日期:2002-07-01 00:00:00

  • Machine learning for metabolic engineering: A review.

    abstract::Machine learning provides researchers a unique opportunity to make metabolic engineering more predictable. In this review, we offer an introduction to this discipline in terms that are relatable to metabolic engineers, as well as providing in-depth illustrative examples leveraging omics data and improving production. ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章,评审

    doi:10.1016/j.ymben.2020.10.005

    authors: Lawson CE,Martí JM,Radivojevic T,Jonnalagadda SVR,Gentz R,Hillson NJ,Peisert S,Kim J,Simmons BA,Petzold CJ,Singer SW,Mukhopadhyay A,Tanjore D,Dunn JG,Garcia Martin H

    更新日期:2021-01-01 00:00:00

  • Design and application of genetically-encoded malonyl-CoA biosensors for metabolic engineering of microbial cell factories.

    abstract::Malonyl-CoA is the basic building block for synthesizing a range of important compounds including fatty acids, phenylpropanoids, flavonoids and non-ribosomal polyketides. Centering around malonyl-CoA, we summarized here the various metabolic engineering strategies employed recently to regulate and control malonyl-CoA ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章,评审

    doi:10.1016/j.ymben.2017.10.011

    authors: Johnson AO,Gonzalez-Villanueva M,Wong L,Steinbüchel A,Tee KL,Xu P,Wong TS

    更新日期:2017-11-01 00:00:00

  • Metabolic engineering of isoprenoids.

    abstract::The metabolic engineering of natural products has begun to prosper in the past few years due to genomic research and the discovery of biosynthetic genes. While the biosynthetic pathways and genes for some isoprenoids have been known for many years, new pathways have been found and known pathways have been further inve...

    journal_title:Metabolic engineering

    pub_type: 杂志文章,评审

    doi:10.1006/mben.2000.0168

    authors: Barkovich R,Liao JC

    更新日期:2001-01-01 00:00:00

  • Determining contributions of exogenous glucose and fructose to de novo fatty acid and glycerol synthesis in liver and adipose tissue.

    abstract::The de novo synthesis of triglyceride (TG) fatty acids (FA) and glycerol can be measured with stable isotope tracers. However, these methods typically do not inform the contribution of a given substrate to specific pathways on these synthetic processes. We integrated deuterated water (2H2O) measurement of de novo lipo...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2019.08.018

    authors: Silva JCP,Marques C,Martins FO,Viegas I,Tavares L,Macedo MP,Jones JG

    更新日期:2019-12-01 00:00:00

  • A metabolic network analysis & NMR experiment design tool with user interface-driven model construction for depth-first search analysis.

    abstract::A Windows program for metabolic engineering analysis and experimental design has been developed. A graphical user interface enables the pictorial, "on-screen" construction of a metabolic network. Once a model is composed, balance equations are automatically generated. Model construction, modification and information e...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/s1096-7176(03)00023-5

    authors: Zhu T,Phalakornkule C,Ghosh S,Grossmann IE,Koepsel RR,Ataai MM,Domach MM

    更新日期:2003-04-01 00:00:00