The opossum MHC genomic region revisited.

Abstract:

:The gray short-tailed opossum Monodelphis domestica is one of the few marsupial species for which a high quality whole genome sequence is available and the major histocompatibility complex (MHC) region has been annotated. Previous analyses revealed only a single locus within the opossum MHC region, designated Modo-UA1, with the features expected for encoding a functionally classical class I α-chain. Nine other class I genes found within the MHC are highly divergent and have features usually associated with non-classical roles. The original annotation, however, was based on an early version of the opossum genome assembly. More recent analyses of allelic variation in individual opossums revealed too many Modo-UA1 sequences per individual to be accounted for by a single MHC class I locus found in the genome assembly. A reanalysis of a later generation assembly, MonDom5, revealed the presence of two additional loci, now designated Modo-UA3 and UA4, in a region that was expanded and more complete than in the earlier assembly. Modo-UA1, UA3, and UA4 are all transcribed, although Modo-UA4 transcripts are rarer. Modo-UA4 is also relatively non-polymorphic. Evidence presented support the accuracy of the later assembly and the existence of three related class I genes in the opossum, making opossums more typical of mammals and most tetrapods by having multiple apparent classical MHC class I loci.

journal_name

Immunogenetics

journal_title

Immunogenetics

authors

Krasnec KV,Sharp AR,Williams TL,Miller RD

doi

10.1007/s00251-015-0826-5

subject

Has Abstract

pub_date

2015-04-01 00:00:00

pages

259-64

issue

4

eissn

0093-7711

issn

1432-1211

journal_volume

67

pub_type

杂志文章
  • Simian immunodeficiency virus-specific CD4+ T cells from successful vaccinees target the SIV Gag capsid.

    abstract::We recently demonstrated that vaccinated rhesus macaques controlled viral replication of a heterologous SIV challenge. Here, we analyzed anamnestic SIV-specific CD4+ T-cell responses expanding immediately after challenge and show that successful vaccinees consistently targeted a short region of the Gag-p27 Capsid (ami...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-010-0473-9

    authors: Giraldo-Vela JP,Bean AT,Rudersdorf R,Wallace LT,Loffredo JT,Erickson P,Wilson NA,Watkins DI

    更新日期:2010-10-01 00:00:00

  • A revised leopard frog phylogeny allows a more detailed examination of adaptive evolution at ranatuerin-2 antimicrobial peptide loci.

    abstract::Ranatuerins are antimicrobial peptides of the innate immune system found in ranid frogs. We previously presented evidence that a positive selective sweep had fixed a single allele at the Ranatuerin2 locus in the northern leopard frog (Rana pipiens). In this paper, we further investigate the evolutionary history of ran...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-010-0430-7

    authors: Tennessen JA,Blouin MS

    更新日期:2010-05-01 00:00:00

  • Large-scale comparative mapping of the MHC class I region of predominant haplotypes in Japanese.

    abstract::In order to further our understanding of major histocompatibility complex (MHC) class I gene organization, we began a comparative analysis of the large scale organization of the class I region in diverse haplotypes. For these studies, the MHC in healthy Japanese donors who have the predominant MHC haplotypes and/or HL...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s002510050252

    authors: Watanabe Y,Tokunaga K,Geraghty DE,Tadokoro K,Juji T

    更新日期:1997-01-01 00:00:00

  • H-Y antigen in XO mice.

    abstract::We examined the expression of H-Y antigen in 14 XO female mice using three monoclonal H-Y-specific antibodies. We found that spleen and liver cells from XO mice removed the reactivity of these antibodies at the same efficacy as XY cells. However radiobinding assays on cultured XO cells suggested a qualitative or quant...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00401354

    authors: Koo GC,Reidy JA,Nagamine CM

    更新日期:1983-01-01 00:00:00

  • Genomic analysis of Ovis aries (Ovar) MHC class IIa loci.

    abstract::Determining the genomic organization of the Ovis aries (Ovar) major histocompatibility complex class IIa region is essential for future functional studies related to antigen presentation. In this study, a bacterial artificial chromosome (BAC) library of genomic DNA from peripheral blood leukocytes (PBL) of a Rambouill...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-008-0275-5

    authors: Herrmann-Hoesing LM,White SN,Kappmeyer LS,Herndon DR,Knowles DP

    更新日期:2008-04-01 00:00:00

  • DNA typing of an HLA-DR bilocus specificity by gene amplification and oligonucleotide hybridization.

    abstract::The structure of the DRB1*03 gene has been interpreted as the product of a gene conversion event involving a DRB3 gene as donor and resulting in the introduction of two short segments of the DRB3 sequence into the DRB1 locus. The serological counterpart of this double insertion is the TR81 specificity. Consequently, t...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00717905

    authors: Sorrentino R,Iannicola C,Botti S,Costanzi S,Tanigaki N,Tosi R

    更新日期:1989-01-01 00:00:00

  • A high-resolution map of the regulator of the complement activation gene cluster on 1q32 that integrates new genes and markers.

    abstract::Sixteen microsatellite markers, including two described here, were used to construct a high-resolution map of the 1q32 region encompassing the regulator of the complement activation (RCA) gene cluster. The RCA genes are a group of related genes coding for plasma and membrane associated proteins that collectively contr...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s002510050224

    authors: Heine-Suñer D,Díaz-Guillén MA,de Villena FP,Robledo M,Benítez J,Rodríguez de Córdoba S

    更新日期:1997-01-01 00:00:00

  • Preliminary characterization of the cells causing an H-2-restricted GVH reaction.

    abstract::An H-2-restricted graft-versus-host reaction can be demonstrated when irradiated bone marrow-protected recipients receive injections of cells from radiation chimeras. The cells responsible are Thy-1-positive, thymus-dependent, radiation-sensitive and pass through a nylon wool column, i.e., they are T cells. Treatment ...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00364767

    authors: Kindred B

    更新日期:1984-01-01 00:00:00

  • Immunologic significance of HLA class I genes in measles virus-specific IFN-gamma and IL-4 cytokine immune responses.

    abstract::The variability of immune responses modulated by human leukocyte antigen (HLA) genes and secreted cytokines is a significant factor in the development of a protective effect of measles vaccine. We studied the association between type 1 helper T cells (Th1)- and Th2-like cytokine immune responses and HLA class I allele...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-005-0061-6

    authors: Ovsyannikova IG,Ryan JE,Vierkant RA,Pankratz VS,Jacobson RM,Poland GA

    更新日期:2005-12-01 00:00:00

  • Evolutionary history of the Rh blood group-related genes in vertebrates.

    abstract::Rh and its homologous Rh50 gene products are considered to form heterotetramers on erythrocyte membranes. Rh protein has Rh blood group antigen sites, while Rh50 protein does not, and is more conserved than Rh protein. We previously determined both Rh and Rh50 gene cDNA coding regions from mouse and rat, and carried o...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s002510000202

    authors: Kitano T,Saitou N

    更新日期:2000-08-01 00:00:00

  • Origin and evolution of the Ig-like domains present in mammalian leukocyte receptors: insights from chicken, frog, and fish homologues.

    abstract::In mammals many natural killer (NK) cell receptors, encoded by the leukocyte receptor complex (LRC), regulate the cytotoxic activity of NK cells and provide protection against virus-infected and tumor cells. To investigate the origin of the Ig-like domains encoded by the LRC genes, a subset of C2-type Ig-like domain s...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-004-0764-0

    authors: Nikolaidis N,Klein J,Nei M

    更新日期:2005-04-01 00:00:00

  • The same ELA class II risk factors confer equine insect bite hypersensitivity in two distinct populations.

    abstract::Insect bite hypersensitivity (IBH) is a chronic allergic dermatitis common in horses. Affected horses mainly react against antigens present in the saliva from the biting midges, Culicoides ssp, and occasionally black flies, Simulium ssp. Because of this insect dependency, the disease is clearly seasonal and prevalence...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-011-0573-1

    authors: Andersson LS,Swinburne JE,Meadows JR,Broström H,Eriksson S,Fikse WF,Frey R,Sundquist M,Tseng CT,Mikko S,Lindgren G

    更新日期:2012-03-01 00:00:00

  • Rearrangement of 21-hydroxylase genes in disease-associated MHC supratypes.

    abstract::Human cDNA probes for 21-hydroxylase (21-OH) and for complement component C4 are used on restriction digests of the members of several families with interesting supratypes. The presence of two Taq I fragments of 3.7 kb and 3.2 kb in size with a 21-OH probe is confirmed in most individuals who show no evidence of C4 de...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00377968

    authors: Garlepp MJ,Wilton AN,Dawkins RL,White PC

    更新日期:1986-01-01 00:00:00

  • Qa alloantigen expression on functional T lymphocytes from spleen and thymus.

    abstract::The cell-surface expression of the class I alloantigen Qa-2 was analyzed on resting and activated spleen and thymus cells using cytotoxic elimination and immunofluorescence and flow cytometry. Spleen cells activated by mitogens or alloantigen were homogeneously positive for cell surface Qa-2, but activated splenic T c...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00377958

    authors: Rabinowitz R,Sharrow SO,Chatterjee-Das S,Rogers MJ,Sachs DH

    更新日期:1986-01-01 00:00:00

  • Killer cell immunoglobulin-like receptor (KIR) gene content variation in the HGDP-CEPH populations.

    abstract::In the present study, we investigate patterns of variation in the KIR cluster in a large and well-characterized sample of worldwide human populations in the Human Genome Diversity Project-Centre d'Etude du Polymorphisme Humain (HGDP-CEPH) panel in order to better understand the patterns of diversity in the region. Com...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-012-0629-x

    authors: Hollenbach JA,Nocedal I,Ladner MB,Single RM,Trachtenberg EA

    更新日期:2012-10-01 00:00:00

  • MICA-A5.1 allele is associated with atypical forms of celiac disease in HLA-DQ2-negative patients.

    abstract::We selected 38 consecutive celiac disease (CD) patients (from a group of 316 consecutive CD patients) and 91 healthy blood donors, all of whom were HLA-DQ2 (DQA1*0501/DQB1*0201) negative, and investigated the presence of the classically associated alleles HLA-DQ8 and HLA-DRB4. We also studied the distribution of MICA ...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-001-0413-9

    authors: Lopez-Vazquez A,Rodrigo L,Fuentes D,Riestra S,Bousoño C,Garcia-Fernandez S,Martinez-Borra J,Gonzalez S,Lopez-Larrea C

    更新日期:2002-02-01 00:00:00

  • Identification of the MHC class I B locus in cynomolgus monkeys.

    abstract::By determining the nucleotide sequences of more than 700 cDNA clones isolated from 16 cynomolgus monkeys, we identified 26 Mafa-B alleles. In addition, nine sequences with similarity to Mamu-I alleles were identified. Since multiple Mafa-B alleles were found in each individual, it was strongly suggested that the cynom...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-005-0782-6

    authors: Uda A,Tanabayashi K,Fujita O,Hotta A,Terao K,Yamada A

    更新日期:2005-05-01 00:00:00

  • Nucleotide sequence of a rabbit IgG heavy chain from the recombinant F-I haplotype.

    abstract::We report the sequence of a cDNA encoding a rabbit immunoglobulin gamma heavy chain of d12 and e14 allotypes with high homology to partial cDNA sequences from rabbits of d11 and e15 allotypes. The encoded rabbit protein shows homologies with human (68-70%) and mouse (60-63%) gamma chains. The nucleotide sequence homol...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00372471

    authors: Bernstein KE,Alexander CB,Mage RG

    更新日期:1983-01-01 00:00:00

  • Mechanisms of genetic control of immune responses. II. Nonresponsiveness in BALB/c GT-specific cell-mediated immune responses does not correlate with the absence of functional T cells or the induction of suppressor T cells.

    abstract::The mechanisms underlying Ir gene control of CMI were addressed by examining the DTH and Tprlf responses specific for the synthetic polymers GT, GAT, and GA. We show that BALB/c mice (GAT/GA responders, GT nonresponders) primed with GT fail to develop DTH and Tprlf responses specific for GT, GAT, or GA. GAT immunizati...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00398791

    authors: Kennedy MK,Jenkins MK,Miller SD

    更新日期:1986-01-01 00:00:00

  • CC-chemokine receptor 5 polymorphism and age of onset in familial multiple sclerosis. Multiple Sclerosis Genetics Group.

    abstract::Multiple sclerosis (MS) is a common disease of the central nervous system characterized by myelin loss and progressive neurological dysfunction. An underlying genetic susceptibility plays a clear role in the etiology of MS, likely acting in concert with an undefined environmental exposure. Full-genome screenings in mu...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s002510050621

    authors: Barcellos LF,Schito AM,Rimmler JB,Vittinghoff E,Shih A,Lincoln R,Callier S,Elkins MK,Goodkin DE,Haines JL,Pericak-Vance MA,Hauser SL,Oksenberg JR

    更新日期:2000-04-01 00:00:00

  • Molecular identification of human Ia antigens coded for by a gene locus closely linked to HLA-DR locus.

    abstract::Human Ia(-like) specificities controlled by gene loci other than HLA-DR were searched for at the molecular level in cells of human B-cell-type cell lines which carry two established DR specificities. Chevalier cells of DRw3 and 7 and U698M cells of DRw2 and 4 were used. Their Ia molecules were partially purified, radi...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF01561564

    authors: Tanigaki N,Tosi R,Pressman D,Ferrara GB

    更新日期:1980-01-01 00:00:00

  • Analysis of HLA class Ia transcripts in human leukaemias.

    abstract::Several leukaemia-specific antigens have been discovered in the recent past, which raised the possibility for T-cell-based immunotherapy for leukaemia. However, failure of such approaches involving interleukin-2 and/or T-cell-based immunotherapy indicated the importance of investigation of the human leucocyte antigen ...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-005-0018-9

    authors: Majumder D,Bandyopadhyay D,Chandra S,Mukhopadhayay A,Mukherjee N,Bandyopadhyay SK,Banerjee S

    更新日期:2005-09-01 00:00:00

  • Differential behavior of cytotoxic effector cells against HLA antigens in strong genetic linkage disequilibrium.

    abstract::Five sets of cytotoxic effector cells were generated, using haplo-identical, first degree relatives in five different families, against the HLA-A3; B7 serological determinants combined with different DR antigens. When tested against a panel of cells bearing combinations of the HLA-A, -B and -DR antigens it was shown t...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00364495

    authors: Kim SJ,Christiansen FT,Silver DM,Dupont B

    更新日期:1981-01-01 00:00:00

  • Evolution of Crohn's disease-associated Nod2 mutations.

    abstract::Several lines of evidence have confirmed the importance of Nod2 mutations for disease susceptibility in Crohn's disease. For tracing Nod2 evolution, exons 4a, 4e, 8, and 12 mutations were screened in a collection of 1,064 DNA samples from 52 worldwide populations. The overall allele frequency was 7.5% for single nucle...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-008-0274-6

    authors: Gasche C,Nemeth M,Grundtner P,Willheim-Polli C,Ferenci P,Schwarzenbacher R

    更新日期:2008-02-01 00:00:00

  • Physical mapping of the retinoid X receptor B gene in mouse and human.

    abstract::Retinoid X receptors (RXRs) are zinc finger-containing nuclear transcription factors. They belong to the nuclear receptor superfamily that contains retinoid receptors, vitamin D receptors, thyroid hormone receptors, and steroid hormone receptors as well as the so-called orphan receptors. We previously mapped all three...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00182317

    authors: Nagata T,Weiss EH,Abe K,Kitagawa K,Ando A,Yara-Kikuti Y,Seldin MF,Ozato K,Inoko H,Taketo M

    更新日期:1995-01-01 00:00:00

  • Analysis of three distinct Ly6-A-related cDNA sequences isolated from rat kidney.

    abstract::Mouse Ly6A and Ly6C cDNA probes were hybridized to total RNA of rat tissues and, as in mouse, the highest level of Ly6-related transcripts was detected in kidney. Therefore, Ly6-related cDNA clones were isolated from a commercial rat kidney cDNA library in lambda gt11. Four of these (RK3, RK6, RK10, and RK11) have bee...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00661220

    authors: Friedman S,Palfree RG,Sirlin S,Hämmerling U

    更新日期:1990-01-01 00:00:00

  • The production of two Th2 cytokines, interleukin-4 and interleukin-10, is controlled independently by locus Cypr1 and by loci Cypr2 and Cypr3, respectively.

    abstract::The strains BALB/cHeA (BALB/c) and STS/A (STS) differ in production of IL-4 and IL-10, two Th2 cytokines, after stimulation of spleen cells with Concanavalin A, STS being a low and BALB/c a high producer. We analyzed the genetic basis of this strain difference using the recombinant congenic (RC) strains of the BALB/c-...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s002510050472

    authors: Kosarová M,Havelková H,Krulová M,Demant P,Lipoldová M

    更新日期:1999-02-01 00:00:00

  • Two genes controlling acute phase responses by the antitumor polysacch aride, lentinan.

    abstract::Lentinan, a beta-1,6;1,3-glucan, is tumor-specific for transplantable mouse solid-type tumors and it also stimulates the production of acute phase proteins (APPs). The APP response to lentinan is of the delayed type (DT-APR) and differs from that to lipopolysaccharide, which is acute. We found that the responses were ...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00587302

    authors: Maeda YY,Takahama S,Kohara Y,Yonekawa H

    更新日期:1996-01-01 00:00:00

  • Correction to: Limited MHC class II gene polymorphism in the West African chimpanzee is distributed maximally by haplotype diversity.

    abstract::The authors regret that an error was present in the Fig. 5 of the above article; some digits in the DRB allele-designations in Fig. 5 have been lost, and are incorrectly presented by only two digits. The correct allele-designations should have been four (or six) digits. The correct Figure is now presented correctly. ...

    journal_title:Immunogenetics

    pub_type: 杂志文章,已发布勘误

    doi:10.1007/s00251-018-1089-8

    authors: Otting N,de Groot NG,Bontrop RE

    更新日期:2018-11-01 00:00:00

  • A single amino-acid polymorphism in pocket A of HLA-A*6602 alters the auxiliary anchors compared with HLA-A*6601 ligands.

    abstract::In this study we have sequenced peptides eluted from a truncated recombinant HLA-A*6602 molecule, and compared their features with data reported for peptides presented in the A*6601 molecule. A striking change in the amino-acid binding preferences was observed at peptide position P1, which interacts with pocket A of t...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-004-0677-y

    authors: Bade-Doeding C,Elsner HA,Eiz-Vesper B,Seltsam A,Holtkamp U,Blasczyk R

    更新日期:2004-05-01 00:00:00