Steps towards 'drop-in' biofuels: focusing on metabolic pathways.

Abstract:

:The past decade has witnessed rapid advance in microbial production of 'drop-in' biofuels from renewable resources. Various biosynthetic pathways have been constructed to produce biofuels with diverse structures, and multiple metabolic engineering strategies have been developed to increase biofuel titers, yields, productivities and system robustness. In this review, we intend to give a brief but comprehensive overview of the most recent progresses on four essential pathways leading to 'drop-in' biofuel production, with an emphasis on the metabolic pathway efficiencies and biofuel structures. Furthermore, we also provide an insightful discussion on optimization strategies to improve the robustness of the microbial platforms for biofuel production.

journal_name

Curr Opin Biotechnol

authors

Jiang W,Gu P,Zhang F

doi

10.1016/j.copbio.2017.10.010

subject

Has Abstract

pub_date

2018-10-01 00:00:00

pages

26-32

eissn

0958-1669

issn

1879-0429

pii

S0958-1669(17)30217-3

journal_volume

53

pub_type

杂志文章,评审
  • The flux and impact of wastewater infrastructure microorganisms on human and ecosystem health.

    abstract::Wastewater infrastructure is designed, in part, to remove microorganisms. However, many microorganisms are able to colonize infrastructure and resist treatment, resulting in an enormous flux of microorganisms to urban adjacent waters. These urban-associated microorganisms are discharged through three primary routes 1)...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2019.03.015

    authors: Newton RJ,McClary JS

    更新日期:2019-06-01 00:00:00

  • Membrane platforms for biological nanopore sensing and sequencing.

    abstract::In the past two decades, biological nanopores have been developed and explored for use in sensing applications as a result of their exquisite sensitivity and easily engineered, reproducible, and economically manufactured structures. Nanopore sensing has been shown to differentiate between highly similar analytes, meas...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2015.12.015

    authors: Schmidt J

    更新日期:2016-06-01 00:00:00

  • Tracing metabolic flux through time and space with isotope labeling experiments.

    abstract::Metabolism is dynamic and must function in context-specific ways to adjust to changes in the surrounding cellular and ecological environment. When isotopic tracers are used, metabolite flow (i.e. metabolic flux) can be quantified through biochemical networks to assess metabolic pathway operation. The cellular activiti...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2019.11.003

    authors: Allen DK,Young JD

    更新日期:2020-08-01 00:00:00

  • Biofilm formation and dispersal in Gram-positive bacteria.

    abstract::Biofilms are structured communities of bacteria, which are adhered to a surface and embedded in a self-produced matrix of extracellular polymeric substances. Since biofilms are very resistant to antimicrobial agents, they are at the basis of a range of problems, including quality and safety issues in food industry. Re...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2010.10.016

    authors: Abee T,Kovács AT,Kuipers OP,van der Veen S

    更新日期:2011-04-01 00:00:00

  • Towards synthetic microbial consortia for bioprocessing.

    abstract::The use of microbial consortia for bioprocessing has been limited by our ability to reliably control community composition and function simultaneously. Recent advances in synthetic biology have enabled population-level coordination and control of ecosystem stability and dynamics. Further, new experimental and computat...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2012.02.001

    authors: Shong J,Jimenez Diaz MR,Collins CH

    更新日期:2012-10-01 00:00:00

  • Silent constraints: the hidden challenges faced in plant metabolic engineering.

    abstract::Metabolic engineering is embraced as a method to sustainably enhance production of valuable phytochemicals with beneficial properties. However, successful production of these compounds in plants is not always predictable even when the pathways are fully known, frequently due to the lack of comprehensive understanding ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2020.12.014

    authors: Lynch JH,Huang XQ,Dudareva N

    更新日期:2021-01-08 00:00:00

  • The use of adenoviral vectors for gene therapy and gene transfer in vivo.

    abstract::Adenoviral vectors have proven to be excellent vehicles for gene delivery in vivo to a wide range of cell types. These vectors have been used to transfer genes such as CFTR to correct the defect in cystic fibrosis and, more recently, to supply serum blood factors and genetically modify tumors to enhance therapy. ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/0958-1669(95)80097-2

    authors: Bramson JL,Graham FL,Gauldie J

    更新日期:1995-10-01 00:00:00

  • Metabolic engineering of Saccharomyces cerevisiae for production of butanol isomers.

    abstract::Saccharomyces cerevisiae has decisive advantages in industrial processes due to its tolerance to alcohols and fermentation conditions. Butanol isomers are considered as suitable fuel substitutes and valuable biomass-derived chemical building blocks. Whereas high production was achieved with bacterial systems, metaboli...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2014.09.004

    authors: Generoso WC,Schadeweg V,Oreb M,Boles E

    更新日期:2015-06-01 00:00:00

  • The fickle CHO: a review of the causes, implications, and potential alleviation of the CHO cell line instability problem.

    abstract::Chinese hamster ovary (CHO) cell-based bioproduction of recombinant proteins can now routinely achieve >5 g/L titers in fed-batches. This progress is partly due to the rapid adaptability of CHO cells to various genetic manipulations and changing process conditions. An inherently plastic genome allows for this adaptabi...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2019.01.011

    authors: Dahodwala H,Lee KH

    更新日期:2019-12-01 00:00:00

  • Enzyme technology and bioprocess engineering.

    abstract::The impact of directed evolution and site-specific mutagenesis on the industrial utility of enzymatic catalysis through the modification of enzyme structure and function is clearly an important area of research in bioprocess engineering. High-throughput screening for novel or improved enzyme activities, both by more e...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(02)00302-6

    authors: Panke S,Wubbolts MG

    更新日期:2002-04-01 00:00:00

  • Algae biofuels: versatility for the future of bioenergy.

    abstract::The world continues to increase its energy use, brought about by an expanding population and a desire for a greater standard of living. This energy use coupled with the realization of the impact of carbon dioxide on the climate, has led us to reanalyze the potential of plant-based biofuels. Of the potential sources of...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2011.10.013

    authors: Jones CS,Mayfield SP

    更新日期:2012-06-01 00:00:00

  • Recent work on Alzheimer's disease transgenics.

    abstract::The most significant feature of the current transgenic models of Alzheimer's disease continues to be the amyloid phenotype. In the past year, mice have been more extensively characterized in terms of the effect of amyloid accumulation on downstream events, such as neurodegeneration and behavioral changes, but the resu...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(98)80132-8

    authors: Duff K

    更新日期:1998-12-01 00:00:00

  • Fragment-based approaches to enzyme inhibition.

    abstract::Fragment-based approaches have provided a new paradigm for small-molecule drug discovery. The methodology is complementary to high-throughput screening approaches, starting from fragments of low molecular complexity and high ligand efficiency, and building up to more potent inhibitors. The approach, which depends heav...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2007.09.003

    authors: Ciulli A,Abell C

    更新日期:2007-12-01 00:00:00

  • Advances in optical detection strategies for reporter signal measurements.

    abstract::Many recent advances in bioreporter technology focus on challenges related to bioengineering, yet in many applications implementation of optical signal measurement is equally susceptible to improvement. For bioluminescent bioreporters, one area of effort lies in the development of semiconductor chip-based detector mod...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2005.12.008

    authors: Wells M

    更新日期:2006-02-01 00:00:00

  • Antisense technology in molecular and cellular bioengineering.

    abstract::Antisense technology is finding increasing application not only in clinical development, but also for cellular engineering. Several types of antisense methods (e.g. antisense oligonucleotides, antisense RNA and small interfering RNA) can be used to inhibit the expression of a target gene. These antisense methods are b...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(03)00115-0

    authors: Lee LK,Roth CM

    更新日期:2003-10-01 00:00:00

  • Recent developments of microfluidics as a tool for biotechnology and microbiology.

    abstract::Academic microfluidics has decisively shifted in recent years from the research on phenomenology and proof-of-concept fluidic functionalities to the developments oriented at applications with biology, medicine and biotechnology in prime focus. Significant efforts are made to demonstrate that microfluidics can be used ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2018.08.004

    authors: Scheler O,Postek W,Garstecki P

    更新日期:2019-02-01 00:00:00

  • New nuclear magnetic resonance structures and structural methodology.

    abstract::Progress in the field of protein nuclear magnetic resonance spectroscopy during the past year has included the elucidation of a number of new structures. In addition, several critical developments in the experimental methodology have opened up the potential for applying the nuclear magnetic resonance-based approach to...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/0958-1669(91)90075-g

    authors: Chazin WJ

    更新日期:1991-08-01 00:00:00

  • Systems biology approach to bioremediation.

    abstract::Bioremediation has historically been approached as a 'black box' in terms of our fundamental understanding. Thus it succeeds and fails, seldom without a complete understanding of why. Systems biology is an integrated research approach to study complex biological systems, by investigating interactions and networks at t...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2012.01.015

    authors: Chakraborty R,Wu CH,Hazen TC

    更新日期:2012-06-01 00:00:00

  • Partners for life: building microbial consortia for the future.

    abstract::New technologies have allowed researchers to better design, build, and analyze complex consortia. These developments are fueling a wider implementation of consortium-based bioprocessing by leveraging synthetic biology, delivering on the field's multitudinous promises of higher efficiencies, superior resiliency, augmen...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2020.10.001

    authors: Rapp KM,Jenkins JP,Betenbaugh MJ

    更新日期:2020-12-01 00:00:00

  • Designer microbes for biosynthesis.

    abstract::Microbes have long been adapted for the biosynthetic production of useful compounds. There is increasing demand for the rapid and cheap microbial production of diverse molecules in an industrial setting. Microbes can now be designed and engineered for a particular biosynthetic purpose, thanks to recent developments in...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2014.02.014

    authors: Quin MB,Schmidt-Dannert C

    更新日期:2014-10-01 00:00:00

  • Protein engineering in designing tailored enzymes and microorganisms for biofuels production.

    abstract::Lignocellulosic biofuels represent a sustainable, renewable, and the only foreseeable alternative energy source to transportation fossil fuels. However, the recalcitrant nature of lignocellulose poses technical hurdles to an economically viable biorefinery. Low enzymatic hydrolysis efficiency and low productivity, yie...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2009.07.001

    authors: Wen F,Nair NU,Zhao H

    更新日期:2009-08-01 00:00:00

  • Genetic engineering for fungal and bacterial diseases.

    abstract::Significant new advances at the molecular level in the field of plant-pathogen interactions form the basis for novel transgenic approaches to crop protection. The cloning of disease resistance genes and the dissection of the signal transduction components of the hypersensitive response and systemic acquired resistance...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章

    doi:10.1016/s0958-1669(97)80104-8

    authors: Shah DM

    更新日期:1997-04-01 00:00:00

  • Protein fragment complementation strategies for biochemical network mapping.

    abstract::The organization of biochemical networks that make up the living cell can be defined by studying the dynamics of protein-protein interactions. To this end, experimental strategies based on protein fragment complementation assays (PCAs) have been used to map biochemical networks and to identify novel components of thes...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2003.10.014

    authors: Michnick SW

    更新日期:2003-12-01 00:00:00

  • Strategies for extended serum half-life of protein therapeutics.

    abstract::With a growing number of protein therapeutics being developed, many of them exhibiting a short plasma half-life, half-life extension strategies find increasing attention by the biotech and pharmaceutical industry. Extension of the half-life can help to reduce the number of applications and to lower doses, thus are ben...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2011.06.012

    authors: Kontermann RE

    更新日期:2011-12-01 00:00:00

  • Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis.

    abstract::The recent technological advances in next generation sequencing have brought the field closer to the goal of reconstructing all genomes within a community by presenting high throughput sequencing at much lower costs. While these next-generation sequencing technologies have allowed a massive increase in available raw s...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2011.11.013

    authors: Scholz MB,Lo CC,Chain PS

    更新日期:2012-02-01 00:00:00

  • Selection of biologically active peptides by phage display of random peptide libraries.

    abstract::Random peptide libraries displayed on phage are used as a source of peptides for epitope mapping, for the identification of critical amino acids responsible for protein-protein interactions and as leads for the discovery of new therapeutics. Efficient and simple procedures have been devised to select peptides binding ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(96)80072-3

    authors: Cortese R,Monaci P,Luzzago A,Santini C,Bartoli F,Cortese I,Fortugno P,Galfrè G,Nicosia A,Felici F

    更新日期:1996-12-01 00:00:00

  • Genetic alphabet expansion biotechnology by creating unnatural base pairs.

    abstract::Recent studies have made it possible to expand the genetic alphabet of DNA, which is originally composed of the four-letter alphabet with A-T and G-C pairs, by introducing an unnatural base pair (UBP). Several types of UBPs function as a third base pair in replication, transcription, and/or translation. Through the UB...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2017.09.006

    authors: Lee KH,Hamashima K,Kimoto M,Hirao I

    更新日期:2018-06-01 00:00:00

  • Advances in cellulosic conversion to fuels: engineering yeasts for cellulosic bioethanol and biodiesel production.

    abstract::Cellulosic fuels are expected to have great potential industrial applications in the near future, but they still face technical challenges to become cost-competitive fuels, thus presenting many opportunities for improvement. The economical production of viable biofuels requires metabolic engineering of microbial platf...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2017.11.007

    authors: Ko JK,Lee SM

    更新日期:2018-04-01 00:00:00

  • Linking marine biology and biotechnology.

    abstract::Studies of biological systems in which there is a direct link between the challenges faced by marine organisms and biotechnologies enable us to rationally search for active natural compounds and other novel biotechnologies. This approach is proving successful in developing new methods for the prevention of marine biof...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(02)00311-7

    authors: de Nys R,Steinberg PD

    更新日期:2002-06-01 00:00:00

  • Computational methods for evaluation of cell-based data assessment--Bioconductor.

    abstract::Recent advances in miniaturization and automation of technologies have enabled cell-based assay high-throughput screening, bringing along new challenges in data analysis. Automation, standardization, reproducibility have become requirements for qualitative research. The Bioconductor community has worked in that direct...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2012.09.003

    authors: Le Meur N

    更新日期:2013-02-01 00:00:00