Principles of Protein Stability and Their Application in Computational Design.

abstract：:Inactivation of the transcription factor p53, through either direct mutation or aberrations in one of its many regulatory pathways, is a hallmark of virtually every tumor. In recent years, screening for p53 activators and a better understanding of the molecular mechanisms of oncogenic perturbations of p53 function hav...

journal_title：Annual review of biochemistry

authors： Joerger AC,Fersht AR

更新日期：2016-06-02 00:00:00

abstract：:The past few years have seen exciting advances in understanding the structure and function of catalytic RNA. Crystal structures of several ribozymes have provided detailed insight into the folds of RNA molecules. Models of other biologically important RNAs have been constructed based on structural, phylogenetic, and b...

journal_title：Annual review of biochemistry

authors： Doherty EA,Doudna JA

更新日期：2000-01-01 00:00:00

abstract：:Prenylation is a class of lipid modification involving covalent addition of either farnesyl (15-carbon) or geranylgeranyl (20-carbon) isoprenoids to conserved cysteine residues at or near the C-terminus of proteins. Known prenylated proteins include fungal mating factors, nuclear lamins, Ras and Ras-related GTP-bindin...

journal_title：Annual review of biochemistry

authors： Zhang FL,Casey PJ

更新日期：1996-01-01 00:00:00

abstract：:Mitochondria are essential organelles with numerous functions in cellular metabolism and homeostasis. Most of the >1,000 different mitochondrial proteins are synthesized as precursors in the cytosol and are imported into mitochondria by five transport pathways. The protein import machineries of the mitochondrial membr...

journal_title：Annual review of biochemistry

authors： Wiedemann N,Pfanner N

更新日期：2017-06-20 00:00:00

abstract：:Protein folding in the cell is mediated by an extensive network of >1,000 chaperones, quality control factors, and trafficking mechanisms collectively termed the proteostasis network. While the components and organization of this network are generally well established, our understanding of how protein-folding problems...

journal_title：Annual review of biochemistry

authors： Sebastian RM,Shoulders MD

更新日期：2020-06-20 00:00:00

abstract：:D-amino acids have been detected in a variety of peptides synthesized by animal cells. These include opiate and antimicrobial peptides from amphibian skin, neuropeptides from snail ganglia, a hormone from crustaceans, and a constituent of a spider venom. cDNA cloning has shown that at those positions where a D-amino a...

journal_title：Annual review of biochemistry

authors： Kreil G

更新日期：1997-01-01 00:00:00

abstract：:Homologous recombination (HR) serves to eliminate deleterious lesions, such as double-stranded breaks and interstrand crosslinks, from chromosomes. HR is also critical for the preservation of replication forks, for telomere maintenance, and chromosome segregation in meiosis I. As such, HR is indispensable for the main...

journal_title：Annual review of biochemistry

authors： San Filippo J,Sung P,Klein H

更新日期：2008-01-01 00:00:00

abstract：:Telomeres are essential for genome stability in all eukaryotes. Changes in telomere functions and the associated chromosomal abnormalities have been implicated in human aging and cancer. Telomeres are composed of repetitive sequences that can be maintained by telomerase, a complex containing a reverse transcriptase (h...

journal_title：Annual review of biochemistry

authors： Smogorzewska A,de Lange T

更新日期：2004-01-01 00:00:00

abstract：:The rhodopsin crystal structure provides a structural basis for understanding the function of this and other G protein-coupled receptors (GPCRs). The major structural motifs observed for rhodopsin are expected to carry over to other GPCRs, and the mechanism of transformation of the receptor from inactive to active for...

journal_title：Annual review of biochemistry

authors： Palczewski K

更新日期：2006-01-01 00:00:00

abstract：:This review focuses on molecular mechanisms that underlie the communication between the nuclear and mitochondrial genomes in eukaryotic cells. These genomes interact in at least two ways. First, they contribute essential subunit polypeptides to important mitochondrial proteins; second, they collaborate in the synthesi...

journal_title：Annual review of biochemistry

authors： Poyton RO,McEwen JE

更新日期：1996-01-01 00:00:00

abstract：:I was born in China and would have remained there but for the tumultuous events that led many of my generation to the United States for graduate studies. Norman Davidson introduced me to DNA when I became a postdoctoral fellow in his group at the California Institute of Technology in 1964, and a fortuitous conversatio...

journal_title：Annual review of biochemistry

authors： Wang JC

更新日期：2009-01-01 00:00:00

abstract：:A childhood fascination with animals, plants, and insects was aided and abetted by many giants, beginning with my parents. The Bronx High School of Science and the City College of New York (CCNY) made a solid and priceless grounding in chemistry and biology available free of charge. Abe Mazur at CCNY revealed the wond...

journal_title：Annual review of biochemistry

authors： Fridovich I

更新日期：2003-01-01 00:00:00

abstract：:The nanoscale engineering of nucleic acids has led to exciting molecular technologies for high-end biological imaging. The predictable base pairing, high programmability, and superior new chemical and biological methods used to access nucleic acids with diverse lengths and in high purity, coupled with computational to...

journal_title：Annual review of biochemistry

authors： Chakraborty K,Veetil AT,Jaffrey SR,Krishnan Y

更新日期：2016-06-02 00:00:00

abstract：:In the past decades, advances in microscopy have made it possible to study the dynamics of individual biomolecules in vitro and resolve intramolecular kinetics that would otherwise be hidden in ensemble averages. More recently, single-molecule methods have been used to image, localize, and track individually labeled m...

journal_title：Annual review of biochemistry

authors： Elf J,Barkefors I

更新日期：2019-06-20 00:00:00

abstract：:The protein kinase Akt/PKB is activated via a multistep process by a variety of signals. In the early steps of this process, PI-3 kinase-generated D3-phosphorylated phosphoinositides bind the Akt PH domain and induce the translocation of the kinase to the plasma membrane where it co-localizes with phosphoinositide-dep...

journal_title：Annual review of biochemistry

authors： Chan TO,Rittenhouse SE,Tsichlis PN

更新日期：1999-01-01 00:00:00

abstract：:Multistep chemical reactions are increasingly seen as important in a growing number of complex biotransformations. Covalently attached prosthetic groups or swinging arms, and their associated protein domains, are essential to the mechanisms of active-site coupling and substrate channeling in a number of the multifunct...

journal_title：Annual review of biochemistry

authors： Perham RN

更新日期：2000-01-01 00:00:00

abstract：:The complexity of even the simplest known life forms makes efforts to synthesize living cells from inanimate components seem like a daunting task. However, recent progress toward the creation of synthetic cells, ranging from simple protocells to artificial cells approaching the complexity of bacteria, suggests that th...

journal_title：Annual review of biochemistry

authors： Blain JC,Szostak JW

更新日期：2014-01-01 00:00:00

abstract：:The relationship between protein dynamics and function is a subject of considerable contemporary interest. Although protein motions are frequently observed during ligand binding and release steps, the contribution of protein motions to the catalysis of bond making/breaking processes is more difficult to probe and veri...

journal_title：Annual review of biochemistry

authors： Klinman JP,Kohen A

更新日期：2013-01-01 00:00:00

abstract：:Alterations of chromatin structure have been shown to be crucial for response to cell signaling and for programmed gene expression in development. Posttranslational histone modifications influence changes in chromatin structure both directly and by targeting or activating chromatin-remodeling complexes. Histone modifi...

journal_title：Annual review of biochemistry

authors： Suganuma T,Workman JL

更新日期：2011-01-01 00:00:00

abstract：:Many critical biological processes take place at hydrophobic:hydrophilic interfaces, and a wide range of organisms produce surface-active proteins and peptides that reduce surface and interfacial tension and mediate growth and development at these boundaries. Microorganisms produce both small lipid-associated peptides...

journal_title：Annual review of biochemistry

authors： Sunde M,Pham CLL,Kwan AH

更新日期：2017-06-20 00:00:00

abstract：:The existence and function of actin in the nucleus has been hotly debated for forty years. Recently, beta-actin was found to be a component of mammalian SWI/SNF-like BAF chromatin remodeling complexes and still more recently other SWI/SNF-related chromatin remodeling complexes in yeast, flies, and man. Although the fu...

journal_title：Annual review of biochemistry

authors： Olave IA,Reck-Peterson SL,Crabtree GR

更新日期：2002-01-01 00:00:00

abstract：:Human immunodeficiency virus type 1 is a complex retrovirus encoding 15 distinct proteins. Substantial progress has been made toward understanding the function of each protein, and three-dimensional structures of many components, including portions of the RNA genome, have been determined. This review describes the fun...

journal_title：Annual review of biochemistry

authors： Frankel AD,Young JA

更新日期：1998-01-01 00:00:00

abstract：:Sorting of transmembrane proteins to endosomes and lysosomes is mediated by signals present within the cytosolic domains of the proteins. Most signals consist of short, linear sequences of amino acid residues. Some signals are referred to as tyrosine-based sorting signals and conform to the NPXY or YXXO consensus moti...

journal_title：Annual review of biochemistry

authors： Bonifacino JS,Traub LM

更新日期：2003-01-01 00:00:00

abstract：:Early influences led me first to medical school with a view to microbiology, but I felt the lack of a deeper foundation and changed to chemistry, which in turn led me to physics and mathematics. I moved to the University of Cape Town to work on the X-ray crystallography of some small organic compounds. I developed a n...

journal_title：Annual review of biochemistry

authors： Klug A

更新日期：2010-01-01 00:00:00

abstract：:Cys2His2 zinc finger proteins offer a stable and versatile framework for the design of proteins that recognize desired target sites on double-stranded DNA. Individual fingers from these proteins have a simple beta beta alpha structure that folds around a central zinc ion, and tandem sets of fingers can contact neighbo...

journal_title：Annual review of biochemistry

authors： Pabo CO,Peisach E,Grant RA

更新日期：2001-01-01 00:00:00

abstract：:DNA mismatch repair (MMR) is an evolutionarily conserved process that corrects mismatches generated during DNA replication and escape proofreading. MMR proteins also participate in many other DNA transactions, such that inactivation of MMR can have wide-ranging biological consequences, which can be either beneficial o...

journal_title：Annual review of biochemistry

authors： Kunkel TA,Erie DA

更新日期：2005-01-01 00:00:00

abstract：:Several lines of experimentation suggest that endogenous retinoids, metabolites of vitamin A, play a role in the anterior/posterior development of the central body axis and the limbs of vertebrates. High levels of endogenous retinoids have been detected in proximity to these developing axes in a variety of vertebrate ...

journal_title：Annual review of biochemistry

authors： Means AL,Gudas LJ

更新日期：1995-01-01 00:00:00

abstract：:The packaging of chromosomal DNA by nucleosomes condenses and organizes the genome, but occludes many regulatory DNA elements. However, this constraint also allows nucleosomes and other chromatin components to actively participate in the regulation of transcription, chromosome segregation, DNA replication, and DNA rep...

journal_title：Annual review of biochemistry

authors： Clapier CR,Cairns BR

更新日期：2009-01-01 00:00:00

abstract：:DNA molecules are able to transport electrons over long distances. In most experiments the process is stimulated by the oxidation of guanines (G), which generates guanine radical cations. The electron transport through DNA occurs in a multistep hopping mechanism with all Gs as carriers of the positive charge. The rate...

journal_title：Annual review of biochemistry

authors： Giese B

更新日期：2002-01-01 00:00:00

abstract：:Clathrin-mediated endocytosis (CME) is the major endocytic pathway in mammalian cells. It is responsible for the uptake of transmembrane receptors and transporters, for remodeling plasma membrane composition in response to environmental changes, and for regulating cell surface signaling. CME occurs via the assembly an...

journal_title：Annual review of biochemistry

authors： Mettlen M,Chen PH,Srinivasan S,Danuser G,Schmid SL

更新日期：2018-06-20 00:00:00