Novel partitioning of DNA cleavage sites for Drosophila topoisomerase II.

Abstract:

:We have examined the long-range distribution of double-stranded DNA cleavage sites for Drosophila melanogaster topoisomerase II. These studies reveal a novel partitioning of preferred topoisomerase II cleavage sites. In the eukaryotic DNAs examined, major cleavage sites were typically found in nontranscribed spacer segments and close to the 5' and 3' boundaries of genes. In contrast, there were few if any prominent cleavage sites within genes. In addition, most of the major topoisomerase II cleavage sites closely corresponded to naked DNA hypersensitive sites for the prokaryotic enzyme, micrococcal nuclease.

journal_name

Cell

journal_title

Cell

authors

Udvardy A,Schedl P,Sander M,Hsieh TS

doi

10.1016/0092-8674(85)90353-8

subject

Has Abstract

pub_date

1985-04-01 00:00:00

pages

933-41

issue

4

eissn

0092-8674

issn

1097-4172

pii

0092-8674(85)90353-8

journal_volume

40

pub_type

杂志文章

相关文献

CELL文献大全
  • Interhomolog bias during meiotic recombination: meiotic functions promote a highly differentiated interhomolog-only pathway.

    abstract::Meiotic recombination occurs preferentially between homologous nonsister chromatids rather than between sisters, opposite to the bias of mitotic recombinational repair. We have examined formation of joint molecule recombination intermediates (JMs) between homologs and between sisters in yeast strains lacking the meiot...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(00)80378-5

    authors: Schwacha A,Kleckner N

    更新日期:1997-09-19 00:00:00

  • Adenovirus E1B 19 kDa and Bcl-2 proteins interact with a common set of cellular proteins.

    abstract::Adenovirus E1B 19 kDa protein protects against cell death induced by viral infection and certain external stimuli. The Bcl-2 protein can functionally substitute for the E1B 19 kDa protein. To identify cellular targets for the 19 kDa protein, we used the two-hybrid screen in yeast. We have isolated cDNAs for three diff...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(94)90202-x

    authors: Boyd JM,Malstrom S,Subramanian T,Venkatesh LK,Schaeper U,Elangovan B,D'Sa-Eipper C,Chinnadurai G

    更新日期:1994-10-21 00:00:00

  • Cyclic dinucleotides and the innate immune response.

    abstract::Cyclic dinucleotides (CDNs) have been previously recognized as important secondary signaling molecules in bacteria and, more recently, in mammalian cells. In the former case, they represent secondary messengers affecting numerous responses of the prokaryotic cell, whereas in the latter, they act as agonists of the inn...

    journal_title:Cell

    pub_type: 杂志文章,评审

    doi:10.1016/j.cell.2013.08.014

    authors: Danilchanka O,Mekalanos JJ

    更新日期:2013-08-29 00:00:00

  • Ferroptosis: A Regulated Cell Death Nexus Linking Metabolism, Redox Biology, and Disease.

    abstract::Ferroptosis is a form of regulated cell death characterized by the iron-dependent accumulation of lipid hydroperoxides to lethal levels. Emerging evidence suggests that ferroptosis represents an ancient vulnerability caused by the incorporation of polyunsaturated fatty acids into cellular membranes, and cells have dev...

    journal_title:Cell

    pub_type: 杂志文章,评审

    doi:10.1016/j.cell.2017.09.021

    authors: Stockwell BR,Friedmann Angeli JP,Bayir H,Bush AI,Conrad M,Dixon SJ,Fulda S,Gascón S,Hatzios SK,Kagan VE,Noel K,Jiang X,Linkermann A,Murphy ME,Overholtzer M,Oyagi A,Pagnussat GC,Park J,Ran Q,Rosenfeld CS,Salnikow K

    更新日期:2017-10-05 00:00:00

  • Evidence that Armadillo transduces wingless by mediating nuclear export or cytosolic activation of Pangolin.

    abstract::Secreted proteins of the Wnt family have profound organizing roles during animal development and are transduced via the activities of the Frizzled (Fz) class of transmembrane receptors and the TCF/LEF/Pangolin class of transcription factors. beta-catenins, including Drosophila Armadillo (Arm), link activation of Fz at...

    journal_title:Cell

    pub_type: 杂志文章,收录出版

    doi:10.1016/s0092-8674(02)01037-1

    authors: Chan SK,Struhl G

    更新日期:2002-10-18 00:00:00

  • Cellular memory and the histone code.

    abstract::The histone tails on the nucleosome surface are subject to enzyme-catalyzed modifications that may, singly or in combination, form a code specifying patterns of gene expression. Recent papers provide insights into how a combinatorial code might be set and read. They show how modification of one residue can influence t...

    journal_title:Cell

    pub_type: 评论,杂志文章,评审

    doi:10.1016/s0092-8674(02)01080-2

    authors: Turner BM

    更新日期:2002-11-01 00:00:00

  • Switch between large hand-over-hand and small inchworm-like steps in myosin VI.

    abstract::Many biological motor molecules move within cells using stepsizes predictable from their structures. Myosin VI, however, has much larger and more broadly distributed stepsizes than those predicted from its short lever arms. We explain the discrepancy by monitoring Qdots and gold nanoparticles attached to the myosin-VI...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2010.08.033

    authors: Nishikawa S,Arimoto I,Ikezaki K,Sugawa M,Ueno H,Komori T,Iwane AH,Yanagida T

    更新日期:2010-09-17 00:00:00

  • The fourth immunoglobulin domain of the stem cell factor receptor couples ligand binding to signal transduction.

    abstract::Receptor dimerization is ubiquitous to the action of all receptor tyrosine kinases, and in the case of dimeric ligands, such as the stem cell factor (SCF), it was attributed to ligand bivalency. However, by using a dimerization-inhibitory monoclonal antibody to the SCF receptor, we confined a putative dimerization sit...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(95)90455-7

    authors: Blechman JM,Lev S,Barg J,Eisenstein M,Vaks B,Vogel Z,Givol D,Yarden Y

    更新日期:1995-01-13 00:00:00

  • Path of DNA within the Mu transpososome. Transposase interactions bridging two Mu ends and the enhancer trap five DNA supercoils.

    abstract::The phage Mu transpososome is assembled by interactions of transposase subunits with the left (L) and right (R) ends of Mu and an enhancer (E) located in between. A metastable three-site complex LER progresses into a more stable type 0 complex in which a tetrameric transposase is poised for DNA cleavage. "Difference t...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(02)00728-6

    authors: Pathania S,Jayaram M,Harshey RM

    更新日期:2002-05-17 00:00:00

  • The discovery of statins.

    abstract::This year, the Lasker Foundation confers its Clinical Medical Research Award on Akira Endo for his isolation from fungi of statins, potent inhibitors of cholesterol synthesis in the liver. The introduction of statins to clinical practice has markedly reduced morbidity and mortality from atherosclerotic cardiovascular ...

    journal_title:Cell

    pub_type: 历史文章,杂志文章

    doi:10.1016/j.cell.2008.09.008

    authors: Stossel TP

    更新日期:2008-09-19 00:00:00

  • The interaction of estradiol-receptor protein with the genome: an argument for the existence of undetected specific sites.

    abstract::In extracts from rat and calf uterus, the steroid hormone 17 beta-estradiol stimulates the binding of its specific receptor protein to DNA. This interaction appears to be of low affinity (half of the estradiol-activated, 5S receptor bound at 300-400 mug/ml DNA) and nonspecific with respect to DNA base sequence. No bin...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(75)90150-6

    authors: Yamamoto K,Alberts B

    更新日期:1975-04-01 00:00:00

  • A chromosome RNAissance.

    abstract::In RNA-mediated interference (RNAi), double-stranded RNAs (dsRNAs) target complementary mRNAs for degradation. New work demonstrates that essential chromosomal functions are mediated through RNAi protein components and short RNAs, which alter chromosome function at specific DNA loci via histone modification. ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(02)01039-5

    authors: Dernburg AF,Karpen GH

    更新日期:2002-10-18 00:00:00

  • xol-1 acts as an early switch in the C. elegans male/hermaphrodite decision.

    abstract::xol-1 is the earliest-acting gene in the known hierarchy that controls C. elegans sex determination and dosage compensation. We show that the primary sex-determining signal (the X/A ratio) directs the choice of sexual fate by regulating xol-1 transcript levels: high xol-1 expression during gastrulation triggers male d...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(95)90452-2

    authors: Rhind NR,Miller LM,Kopczynski JB,Meyer BJ

    更新日期:1995-01-13 00:00:00

  • Family of proteins that interact with TFIID and regulate promoter activity.

    abstract::A family of proteins was shown to bind cooperatively with TFIID to core promoters, as previously demonstrated for the general initiation factor TFIIA. These factors form distinct complexes with TFIID, fail to bind DNA in the absence of TFIID, differ chromatographically from TFIIA, and compete with TFIIA for binding to...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(91)90530-c

    authors: Meisterernst M,Roeder RG

    更新日期:1991-11-01 00:00:00

  • Vacuole fusion at a ring of vertex docking sites leaves membrane fragments within the organelle.

    abstract::Three membrane microdomains can be identified on docked vacuoles: "outside" membrane, not in contact with other vacuoles, "boundary" membrane that contacts adjacent vacuoles, and "vertices," where boundary and outside membrane meet. In living cells and in vitro, vacuole fusion occurs at vertices rather than from a cen...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(02)00632-3

    authors: Wang L,Seeley ES,Wickner W,Merz AJ

    更新日期:2002-02-08 00:00:00

  • Translational recoding induced by G-rich mRNA sequences that form unusual structures.

    abstract::We investigated a herpesvirus mutant that contains a single base insertion in its thymidine kinase (tk) gene yet expresses low levels of TK via a net +1 translational recoding event. Within this mutant gene, we defined a G-rich signal that is sufficient to induce recoding. Unlike other translational recoding events, d...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(00)80170-1

    authors: Horsburgh BC,Kollmus H,Hauser H,Coen DM

    更新日期:1996-09-20 00:00:00

  • Biotech's perfect storm.

    abstract::The global financial crisis has hit biotech companies hard both in the US and Europe as venture capital dries up. Finding new sources of long-term financing for translating research into new therapeutics will be essential for maintaining innovation and new drug development by biotech companies. ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2009.07.026

    authors: Karberg S

    更新日期:2009-08-07 00:00:00

  • A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response.

    abstract::Recently, more than 1000 large intergenic noncoding RNAs (lincRNAs) have been reported. These RNAs are evolutionarily conserved in mammalian genomes and thus presumably function in diverse biological processes. Here, we report the identification of lincRNAs that are regulated by p53. One of these lincRNAs (lincRNA-p21...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2010.06.040

    authors: Huarte M,Guttman M,Feldser D,Garber M,Koziol MJ,Kenzelmann-Broz D,Khalil AM,Zuk O,Amit I,Rabani M,Attardi LD,Regev A,Lander ES,Jacks T,Rinn JL

    更新日期:2010-08-06 00:00:00

  • Aging reduces proliferative capacities of liver by switching pathways of C/EBPalpha growth arrest.

    abstract::The liver is capable of completely regenerating itself in response to injury and after partial hepatectomy. In liver of old animals, the proliferative response is dramatically reduced, the mechanism for which is unknown. The liver specific protein, C/EBPalpha, normally arrests proliferation of hepatocytes through inhi...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(03)00318-0

    authors: Iakova P,Awad SS,Timchenko NA

    更新日期:2003-05-16 00:00:00

  • Identification of a regulated pathway for nuclear pre-mRNA turnover.

    abstract::We have identified a nuclear pathway that rapidly degrades unspliced pre-mRNAs in yeast. This involves 3'-->5' degradation by the exosome complex and 5'-->3' degradation by the exonuclease Rat1p. 3'-->5' degradation is normally the major pathway and is regulated in response to carbon source. Inhibition of pre-mRNA deg...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(00)00065-9

    authors: Bousquet-Antonelli C,Presutti C,Tollervey D

    更新日期:2000-09-15 00:00:00

  • A neural circuit mechanism integrating motivational state with memory expression in Drosophila.

    abstract::Behavioral expression of food-associated memory in fruit flies is constrained by satiety and promoted by hunger, suggesting an influence of motivational state. Here, we identify a neural mechanism that integrates the internal state of hunger and appetitive memory. We show that stimulation of neurons that express neuro...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2009.08.035

    authors: Krashes MJ,DasGupta S,Vreede A,White B,Armstrong JD,Waddell S

    更新日期:2009-10-16 00:00:00

  • Myogenesis in primary cell cultures from Drosophila melanogaster: protein synthesis and actin heterogeneity during development.

    abstract::Muscle cell cultures from Drosophila melanogaster were obtained by plating dissociated gastrula stage embryo cells on protamine-treated culture dishes. They myogenic cells in these cultures fuse to form multinucleated pulsating cells by 15 hr after plating. An analysis of protein synthesis during myogenesis in these c...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(78)90210-6

    authors: Storti RV,Horovitch SJ,Scott MP,Rich A,Pardue ML

    更新日期:1978-04-01 00:00:00

  • The molecular basis of I-R hybrid dysgenesis in Drosophila melanogaster: identification, cloning, and properties of the I factor.

    abstract::We have analyzed two mutations of the white-eye gene, which arose in flies subject to I-R hybrid dysgenesis. These mutations are associated with insertions of apparently identical 5.4 kb sequences, which we have cloned. We believe that these insertions are copies of the I factor controlling I-R hybrid dysgenesis. The ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(84)90536-1

    authors: Bucheton A,Paro R,Sang HM,Pelisson A,Finnegan DJ

    更新日期:1984-08-01 00:00:00

  • MEF2 is an in vivo immune-metabolic switch.

    abstract::Infections disturb metabolic homeostasis in many contexts, but the underlying connections are not completely understood. To address this, we use paired genetic and computational screens in Drosophila to identify transcriptional regulators of immunity and pathology and their associated target genes and physiologies. We...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2013.09.007

    authors: Clark RI,Tan SW,Péan CB,Roostalu U,Vivancos V,Bronda K,Pilátová M,Fu J,Walker DW,Berdeaux R,Geissmann F,Dionne MS

    更新日期:2013-10-10 00:00:00

  • A Genomic Perspective on the Origin and Emergence of SARS-CoV-2.

    abstract::The ongoing pandemic of a new human coronavirus, SARS-CoV-2, has generated enormous global concern. We and others in China were involved in the initial genome sequencing of the virus. Herein, we describe what genomic data reveal about the emergence SARS-CoV-2 and discuss the gaps in our understanding of its origins. ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2020.03.035

    authors: Zhang YZ,Holmes EC

    更新日期:2020-04-16 00:00:00

  • MEC1-dependent redistribution of the Sir3 silencing protein from telomeres to DNA double-strand breaks.

    abstract::The yeast Sir2/3/4p complex is found in abundance at telomeres, where it participates in the formation of silent heterochromatin and telomere maintenance. Here, we show that Sir3p is released from telomeres in response to DNA double-strand breaks (DSBs), binds to DSBs, and mediates their repair, independent of cell ma...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(00)80772-2

    authors: Mills KD,Sinclair DA,Guarente L

    更新日期:1999-05-28 00:00:00

  • A unique cap(m7GpppXm)-dependent influenza virion endonuclease cleaves capped RNAs to generate the primers that initiate viral RNA transcription.

    abstract::We propose a mechanism for the priming of influenza viral RNA transcription by capped RNAs in which specific 5'-terminal fragments are cleaved from the capped RNAs by a virion-associated endonuclease. These fragments would serve as the actual primers for the initiation of transcription by the initial incorporation by ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(81)90449-9

    authors: Plotch SJ,Bouloy M,Ulmanen I,Krug RM

    更新日期:1981-03-01 00:00:00

  • All-Optical Electrophysiology Reveals the Role of Lateral Inhibition in Sensory Processing in Cortical Layer 1.

    abstract::Cortical layer 1 (L1) interneurons have been proposed as a hub for attentional modulation of underlying cortex, but the transformations that this circuit implements are not known. We combined genetically targeted voltage imaging with optogenetic activation and silencing to study the mechanisms underlying sensory proce...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2020.01.001

    authors: Fan LZ,Kheifets S,Böhm UL,Wu H,Piatkevich KD,Xie ME,Parot V,Ha Y,Evans KE,Boyden ES,Takesian AE,Cohen AE

    更新日期:2020-02-06 00:00:00

  • Evolutionary history and adaptation from high-coverage whole-genome sequences of diverse African hunter-gatherers.

    abstract::To reconstruct modern human evolutionary history and identify loci that have shaped hunter-gatherer adaptation, we sequenced the whole genomes of five individuals in each of three different hunter-gatherer populations at > 60× coverage: Pygmies from Cameroon and Khoesan-speaking Hadza and Sandawe from Tanzania. We ide...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2012.07.009

    authors: Lachance J,Vernot B,Elbers CC,Ferwerda B,Froment A,Bodo JM,Lema G,Fu W,Nyambo TB,Rebbeck TR,Zhang K,Akey JM,Tishkoff SA

    更新日期:2012-08-03 00:00:00

  • Tempering temperature changes for robust development.

    abstract::Developmental signaling pathways needed to evolve to be robust against environmental fluctuations. In this issue, Shimizu et al. reveal a complex system of interacting endocytic pathways that help to maintain consistent levels of Notch activity across a range of temperatures. ...

    journal_title:Cell

    pub_type: 评论,杂志文章

    doi:10.1016/j.cell.2014.05.007

    authors: Delidakis C

    更新日期:2014-05-22 00:00:00