Fast-GBS v2.0: an analysis toolkit for genotyping-by-sequencing data.

abstract：:Molecular genetics is becoming an important tool in the breeding and selection of agronomically important traits. BN28 is a low temperature induced gene in Brassicaceae species. PCR and Southern blot analysis indicate that BN28 is polymorphic in the three diploid genomes: Brassica rapa (AA), Brassica nigra (BB), and B...

journal_title：Genome

authors： Hawkins GP,Nykiforuk CL,Johnson-Flanagan AM,Boothe JG

更新日期：1996-08-01 00:00:00

abstract：:All mRNAs on the yeast mitochondrial genome terminate at a conserved dodecamer sequence 5'-AAUAAUAUUCUU-3'. We have characterized two mutants with altered dodecamers. One contains a deletion of the dodecamer at the end of the var1 gene, and the other contains two adjacent transversions in the dodecamer at the end of t...

journal_title：Genome

authors： Butow RA,Zhu H,Perlman P,Conrad-Webb H

更新日期：1989-01-01 00:00:00

abstract：:Vernalization response (Vrn) genes play a major role in determining the flowering/maturity times of spring-sown wheat. We characterized a representative set of 40 western Canadian adapted spring wheat cultivars/lines for 3 Vrn loci. The 40 genotypes were screened, along with 4 genotypes of known Vrn genes, using previ...

journal_title：Genome

authors： Iqbal M,Navabi A,Yang RC,Salmon DF,Spaner D

更新日期：2007-05-01 00:00:00

abstract：:Phytophthora palmivora causes pod rot, a serious disease on cocoa widespread throughout the producing regions. In order to ascertain the genetic determination of cocoa resistance to P. palmivora, a study was carried out on two progenies derived from crosses between a heterozygous, moderately resistant Forastero clone,...

journal_title：Genome

authors： Flament MH,Kebe I,Clément D,Pieretti I,Risterucci AM,N'Goran JA,Cilas C,Despréaux D,Lanaud C

更新日期：2001-02-01 00:00:00

abstract：:The growth hormone (GH) gene of teleost fish exhibits a higher degree of variability compared with other vertebrate groups. However, the different selective constraints at the sequence level are not well understood. In this study, maximum-likelihood (ML) models of codon substitutions were used to investigate Darwinian...

journal_title：Genome

authors： Ryynänen HJ,Primmer CR

更新日期：2006-01-01 00:00:00

abstract：:Genetic parameters were estimated on growth and development traits using analyses of variance and covariance of 42 full-sib families from a select line, 39 full-sib families from a control line of the same strain, and 37 full-sib families from another unselected strain. The traits included percent 1+ smolts, percent s...

journal_title：Genome

authors： O'Flynn FM,Friars GW,Bailey JK,Terhune JM

更新日期：1992-04-01 00:00:00

abstract：:Aegilops is a genus belonging to the family Poaceace, which have played an indispensible role in the evolution of bread wheat and continues to do so by transferring genes by wide hybridization. Being the secondary gene pool of wheat, gene transfer from Aegilops poses difficulties and segregation distortion is common. ...

journal_title：Genome

authors： Niranjana M

更新日期：2017-08-01 00:00:00

abstract：:Using contiguous genomic DNA sequences of Arabidopsis thaliana, we were able to identify a region of conserved structure in the genome of rice. The conserved, and presumptive homoeologous segments, are 194 kb and 219-300 kb in size in Arabidopsis and rice, respectively. They contain five homologous genes, distinguishe...

journal_title：Genome

authors： van Dodeweerd AM,Hall CR,Bent EG,Johnson SJ,Bevan MW,Bancroft I

更新日期：1999-10-01 00:00:00

abstract：:The length variability of the nontranscribed spacer (NTS) of the 5S rDNA repeats was analyzed in species of the genus Lens by means of PCR amplification. The NTS ranged from approximately 227 to approximately 952 bp. The polymorphism detected was higher than previous NTS polymorphisms described in this genus. Three NT...

journal_title：Genome

authors： Fernández M,Ruiz ML,Linares C,Fominaya A,Pérez de la Vega M

更新日期：2005-10-01 00:00:00

abstract：:The superoxide dismutases (SODs) protect oxygen-using cells against reactive oxygen species, the potentially toxic by-products of respiration, oxidative metabolism, and radiation. We have previously shown that genetic disruption of CuZn SOD (SOD1) in Drosophila imparts a recessive phenotype of reduced lifespan, infert...

journal_title：Genome

authors： Woodruff RC,Phillips JP,Hilliker AJ

更新日期：2004-12-01 00:00:00

abstract：:A Brassica campestris-alboglabra monosomic addition line (genome: AA + one chromosome from the C genome, 2n = 21) harbours the Brassica alboglabra (CC, 2n = 18) chromosome with the gene for erucic acid. In order to identify this chromosome, we have studied the mitotic prometaphase chromosomes of Brassica campestris (A...

journal_title：Genome

authors： Cheng BF,Heneen WK,Chen BY

更新日期：1995-04-01 00:00:00

abstract：:Genetic variation in Gir cattle (Bos indicus) has so far not been well characterized. In this study, we used whole genome sequencing of three Gir bulls and a pooled sample from another 11 bulls to identify polymorphisms and loci under selection. A total of 9 990 733 single nucleotide polymorphisms (SNPs) and 604 308 i...

journal_title：Genome

authors： Liao X,Peng F,Forni S,McLaren D,Plastow G,Stothard P

更新日期：2013-10-01 00:00:00

abstract：:Previously published linkage groups (LGs) composed of molecular markers were assigned to classical LGs in the silkworm, Bombyx mori (n = 28). Four markers from the classical linkage map, og, w-1, Lp, and Pfl, were assigned to the molecular linkage maps using sequence tagged sites. In addition, linkage analysis was car...

journal_title：Genome

authors： Yasukochi Y,Banno Y,Yamamoto K,Goldsmith MR,Fujii H

更新日期：2005-08-01 00:00:00

abstract：:Using the Aegilops tauschii clone pAs1 together with the barley clone pHvG38 for two-colour fluorescence in situ hybridization (FISH) the entire chromosome complement of hexaploid wheat was identified. The combination of the two probes allowed easy discrimination of the three genomes of wheat. The banding pattern obta...

journal_title：Genome

authors： Pedersen C,Langridge P

更新日期：1997-10-01 00:00:00

abstract：:High-throughput sequencing (HTS) of DNA barcodes (metabarcoding), particularly when combined with standardized sampling protocols, is one of the most promising approaches for censusing overlooked cryptic invertebrate communities. We present biodiversity estimates based on sequencing of the cytochrome c oxidase subunit...

journal_title：Genome

authors： Al-Rshaidat MM,Snider A,Rosebraugh S,Devine AM,Devine TD,Plaisance L,Knowlton N,Leray M

更新日期：2016-09-01 00:00:00

abstract：:Karyotypes of three accessions of Hordeum chilense (H1, H16, and H7), Hordeum vulgare, and Triticum aestivum were characterized by physical mapping of several repetitive sequences. A total of 14 repetitive sequences were used as probes for fluorescence in situ hybridization (FISH) with the aim of identifying inter- an...

journal_title：Genome

authors： Rey MD,Moore G,Martín AC

更新日期：2018-06-01 00:00:00

abstract：:The Queensland fruit fly, Bactrocera tryoni, like the Mediterranean fruit fly, Ceratitis capitata, has a diploid complement of 12 chromosomes, including five pairs of autosomes and a XX/XY sex chromosome pair. Characteristic features of each chromosome are described. Chromosomal homology between B. tryoni and C. capit...

journal_title：Genome

authors： Zhao JT,Frommer M,Sved JA,Zacharopoulou A

更新日期：1998-08-01 00:00:00

abstract：:Lasiodiplodia theobromae (Pat.) Griffon & Maubl., a member of the family Botryosphaeriaceae, is becoming a significant threat to crops and woody plants in many parts of the world, including the major cacao growing areas. While attempting to isolate Ceratobasidium theobromae, a causal agent of vascular streak dieback (...

journal_title：Genome

authors： Ali SS,Asman A,Shao J,Balidion JF,Strem MD,Puig AS,Meinhardt LW,Bailey BA

更新日期：2020-01-01 00:00:00

abstract：:Eucalyptus globulus subsp. globulus Labill. (Tasmanian Blue Gum), native to southeast Australia, is a benchmark species for the pulp and paper industry. We genotyped 397 trees from 16 populations of E. globulus representing the native diversity in Australia using 24 microsatellite loci. Eight genetically distinct grou...

journal_title：Genome

authors： Costa J,Vaillancourt RE,Steane DA,Jones RC,Marques C

更新日期：2017-09-01 00:00:00

abstract：:Visual quality of field pea (Pisum sativum L.) is one of the most important determinants of the market value of the harvested crop. Seed coat color, seed shape, and seed dimpling are the major components of visual seed quality of field pea and are considered as important breeding objectives. The objectives of this res...

journal_title：Genome

authors： Ubayasena L,Bett K,Tar'an B,Warkentin T

更新日期：2011-04-01 00:00:00

abstract：:Plant disease resistance gene analog (RGA) markers were designed according to the conserved sequence of known RGAs and used to map resistance genes. We used genome-wide RGA markers for genetic analyses of structure and diversity in a global rice germplasm collection. Of the 472 RGA markers, 138 were polymorphic and th...

journal_title：Genome

authors： Ren J,Yu Y,Gao F,Zeng L,Lu X,Wu X,Yan W,Ren G

更新日期：2013-07-01 00:00:00

abstract：:Configurations of mitochondrial coxI and orfB gene regions were analysed by polymerase chain reaction (PCR) in three wild and one cultivated species of Raphanus. A total of 207 individual plants from 60 accessions were used. PCR with five combinations of primers identified five different amplification patterns both in...

journal_title：Genome

authors： Yamagishi H,Terachi T

更新日期：2003-02-01 00:00:00

abstract：:Cashew (Anacardium occidentale L.), introduced into India about 400 years ago, is distributed widely in the coastal regions as spontaneous populations as well as in cultivation. Despite the plant's commercial exploitation, little is known about its actual introduction and diversification. We attempted to construct the...

journal_title：Genome

authors： Archak S,Gaikwad AB,Swamy KR,Karihaloo JL

更新日期：2009-03-01 00:00:00

abstract：:The crucifer oilseed plant false flax (Camelina sativa subsp. sativa) possesses numerous valuable agronomic attributes that make it attractive as an alternative spring-sown crop for tight crop rotations. The oil of false flax is particularly rich in polyunsaturated C18-fatty acids, making it a valuable renewable feeds...

journal_title：Genome

authors： Gehringer A,Friedt W,Lühs W,Snowdon RJ

更新日期：2006-12-01 00:00:00

abstract：:Stenotrophomonas maltophilia is a global multidrug-resistant human opportunistic pathogen in clinical environments. Stenotrophomonas maltophilia is also ubiquitous in aqueous environments, soil, and plants. Various molecular typing methods have revealed that S. maltophilia exhibits high levels of phenotypic and genoty...

journal_title：Genome

authors： Yu D,Yin Z,Li B,Jin Y,Ren H,Zhou J,Zhou W,Liang L,Yue J

更新日期：2016-12-01 00:00:00

abstract：:Five wheat-barley translocations in a wheat background were characterized through the combination of cytogenetic and molecular genetic approaches. The wheat chromosome segments involved in the translocations were identified using sequential GISH and two-colour FISH with the probes pSc119.2 and pAs1. The barley chromat...

journal_title：Genome

authors： Nagy ED,Molnár-Láng M,Linc G,Láng L

更新日期：2002-12-01 00:00:00

abstract：:The use of random amplified polymorphic DNA (RAPD) markers for evaluating seed purity in a commercial F1-hybrid cabbage (Brassica oleracea var. capitata) cultivar is demonstrated. Genomic DNA isolated from single ungerminated seed was found to be suitable for RAPD analysis. DNA from F1-hybrid and its parental lines wa...

journal_title：Genome

authors： Crockett PA,Bhalla PL,Lee CK,Singh MB

更新日期：2000-04-01 00:00:00

abstract：:A novel storage protein gene with obvious [corrected] chimeric structure was isolated from an immature kernel-specific cDNA library prepared from the old Hungarian wheat [corrected] variety, Bánkúti 1201. This clone contains gamma-gliadin sequences in the 5' region and LMW-glutenin sequences on the 3' end. A frameshif...

journal_title：Genome

authors： Nagy IJ,Takács I,Juhász A,Tamás L,Bedo Z

更新日期：2005-10-01 00:00:00

abstract：:Barley yellow dwarf is the most damaging virus-caused disease in bread wheat (Triticum aestivum L.). A resistant line, SW335.1.2-13-11-1-5 (2n = 47), derived from a cross of T. aestivum x Lophopyrum ponticum was characterized by meiotic chromosome pairing, by in situ DNA hybridization and by expression of molecular ma...

journal_title：Genome

authors： Zhong GY,McGuire PE,Qualset CO,Dvorák J

更新日期：1994-10-01 00:00:00

abstract：:RNA-Seq methodology has been used to generate a comprehensive transcriptome sequence resource for perennial ryegrass, an important temperate pasture grass species. A total of 931 547 255 reads were obtained from libraries corresponding to 19 distinct tissue samples, including both vegetative and reproductive stages of...

journal_title：Genome

authors： Shinozuka H,Cogan NOI,Spangenberg GC,Forster JW

更新日期：2017-12-01 00:00:00