Microsatellite analysis of population structure in Eucalyptus globulus.

Abstract:

:Eucalyptus globulus subsp. globulus Labill. (Tasmanian Blue Gum), native to southeast Australia, is a benchmark species for the pulp and paper industry. We genotyped 397 trees from 16 populations of E. globulus representing the native diversity in Australia using 24 microsatellite loci. Eight genetically distinct groups were detected, consistent with genetic groupings detected in previous quantitative and molecular studies. A sample of 29 Portuguese individuals was added to help clarify the origin of the Portuguese landrace. The results suggest a southern and eastern Tasmania origin for the Portuguese landrace. This genetic framework will enable researchers to investigate the provenance of individuals of unknown pedigree and assess the levels of representation of E. globulus natural variation in the Portuguese landrace.

journal_name

Genome

journal_title

Genome

authors

Costa J,Vaillancourt RE,Steane DA,Jones RC,Marques C

doi

10.1139/gen-2016-0218

subject

Has Abstract

pub_date

2017-09-01 00:00:00

pages

770-777

issue

9

eissn

0831-2796

issn

1480-3321

journal_volume

60

pub_type

杂志文章

相关文献

GENOME文献大全
  • Chromosome evolution in kangaroos (Marsupialia: Macropodidae): cross species chromosome painting between the tammar wallaby and rock wallaby spp. with the 2n = 22 ancestral macropodid karyotype.

    abstract::Marsupial mammals show extraordinary karyotype stability, with 2n = 14 considered ancestral. However, macropodid marsupials (kangaroos and wallabies) exhibit a considerable variety of karyotypes, with a hypothesised ancestral karyotype of 2n = 22. Speciation and karyotypic diversity in rock wallabies (Petrogale) is ex...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g98-159

    authors: O'Neill RJ,Eldridge MD,Toder R,Ferguson-Smith MA,O'Brien PC,Graves JA

    更新日期:1999-06-01 00:00:00

  • DNA barcoding reveals CITES-listed species among Taiwanese government-seized chelonian specimens.

    abstract::Compared to traditional morphological identification, DNA barcoding-molecular identification based on sequencing of a segment of mitochondrial cytochrome c oxidase subunit I (COI)-provides a shortcut to authenticating chelonian identifications. Here, we selected 63 government-seized chelonian specimens deposited at Ta...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2017-0264

    authors: Chang CH,Dai WY,Chen TY,Lee AH,Hou HY,Liu SH,Jang-Liaw NH

    更新日期:2018-08-01 00:00:00

  • Isolation and characterization of 70 novel microsatellite markers from ostrich (Struthio camelus) genome.

    abstract::Microsatellite markers are widely used in linkage mapping, parentage testing, population genetic studies, and molecular evolution studies in many agricultural species, while only a limited number of ostrich (Struthio camelus) microsatellites have been isolated. Thus, we constructed a random small-insert genomic librar...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g03-059

    authors: Tang B,Huang YH,Lin L,Hu XX,Feng JD,Yao P,Zhang L,Li N

    更新日期:2003-10-01 00:00:00

  • Genetic relationship among cultivated and wild grapevine accessions from Tunisia.

    abstract::We have used nuclear and chloroplast molecular markers to genotype cultivated and wild accessions of Vitis vinifera L. from Tunisia and assess their genetic relationships. Fifty-five distinct genotypes were identified among 80 cultivated accessions, including 18 genotypic groups containing between 2 and 5 accessions p...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g04-072

    authors: Snoussi H,Slimane MH,Ruiz-García L,Martínez-Zapater JM,Arroyo-García R

    更新日期:2004-12-01 00:00:00

  • Identification of the entire chromosome complement of bread wheat by two-colour FISH.

    abstract::Using the Aegilops tauschii clone pAs1 together with the barley clone pHvG38 for two-colour fluorescence in situ hybridization (FISH) the entire chromosome complement of hexaploid wheat was identified. The combination of the two probes allowed easy discrimination of the three genomes of wheat. The banding pattern obta...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g97-077

    authors: Pedersen C,Langridge P

    更新日期:1997-10-01 00:00:00

  • Development, characterization, and comparative analysis of polymorphism at common bean SSR loci isolated from genic and genomic sources.

    abstract::Microsatellites or SSRs (single sequence repeats) have been used to construct and integrate genetic maps in crop species, including Phaseolus vulgaris. In the present study, 3 cDNA libraries generated by the Bean EST project (http://lgm.esalq.usp.br/BEST/), comprising a unigene collection of 3126 sequences and a genom...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g07-007

    authors: Hanai LR,de Campos T,Camargo LE,Benchimol LL,de Souza AP,Melotto M,Carbonell SA,Chioratto AF,Consoli L,Formighieri EF,Siqueira MV,Tsai SM,Vieira ML

    更新日期:2007-03-01 00:00:00

  • Molecular evolution of ribosomal intergenic spacers in Odontophrynus americanus 2n and 4n (Amphibia: Anura).

    abstract::Ribosomal intergenic spacers (IGSs) of Odontophrynus americanus 2n and 4n were cloned, restriction mapped, and partially sequenced. Three distinct regions, namely alpha, beta, and delta, were identified in the IGSs. The alpha and beta regions flanked the 28S and 18S rRNA genes, respectively, conserving an identical re...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g01-134

    authors: Alvares LE,Polanco C,Brison O,Coutinho LL,Ruiz IR

    更新日期:2002-02-01 00:00:00

  • Gene-for-gene interactions between the rye mildew fungus and wheat cultivars.

    abstract::Genetic mechanisms of the incompatibility between Erysiphe graminis f.sp. secalis and wheat cultivars were analyzed using F1 hybrids between E. graminis f.sp. secalis, Sk-1, and f.sp. tritici, Tk-1. The avirulence of Sk-1 on Triticum aestivum 'Norin 4', 'Chinese Spring', and 'Kokeshi-komugi' was controlled by a single...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g94-108

    authors: Tosa Y

    更新日期:1994-10-01 00:00:00

  • Tomato chromosome 6: effect of alien chromosomal segments on recombinant frequencies.

    abstract::Variation in recombinant frequencies at two adjacent intervals on chromosome 6 of tomato (Lycopersicon esculentum Mill.) has been studied in seven lines that differ in the amount and origin of introgressed segments from wild species. These lines were all crossed to a genotype homozygous recessive for the markers tl, y...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g96-062

    authors: Liharska T,Wordragen M,Kammen A,Zabel P,Koornneef M

    更新日期:1996-06-01 00:00:00

  • Biparental inheritance of RAPD markers in males of the pseudo-arrhenotokous mite Typhlodromus pyri.

    abstract::In pseudo-arrhenotokous mites, haploid males develop from fertilized eggs that undergo paternal genome loss (PGL) during early embryogenesis. We present evidence that some of the paternal genome may be retained in males of the predatory mite Typhlodromus pyri Scheuten (Acari: Phytoseiidae). Two reproductively compatib...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g95-110

    authors: Perrot-Minnot MJ,Navajas M

    更新日期:1995-10-01 00:00:00

  • Distribution of highly repeated DNA sequences in species of the genus Lens Miller.

    abstract::Multiple-target fluorescence in situ hybridization (FISH) was applied on mitotic chromosomes of seven Lens taxa using two highly repetitive sequences (pLc30 and pLc7) isolated from the cultivated lentil and the multigene families for the 18S-5.8S-25S (pTa71) and 5S rRNA (pTa794) from wheat simultaneously as probes. Th...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g03-077

    authors: Galasso I

    更新日期:2003-12-01 00:00:00

  • Polymorphism of PCR-based markers targeting exons, introns, promoter regions, and SSRs in maize and introns and repeat sequences in oat.

    abstract::Sequence databases could be efficiently exploited for development of DNA markers if it were known which gene regions reveal the most polymorphism when amplified by PCR. We developed PCR primer pairs that target specific regions of previously sequenced genes from Avena and Zea species. Primers were targeted to amplify ...

    journal_title:Genome

    pub_type: 杂志文章

    doi:

    authors: Holland JB,Helland SJ,Sharopova N,Rhyne DC

    更新日期:2001-12-01 00:00:00

  • Somatic chimerism, genetic inheritance, and mapping of the fleshless berry (flb) mutation in grapevine (Vitis vinifera L.).

    abstract::The fleshless berry (flb) mutation of grapevine (Vitis vinifera L. 'Ugni Blanc') impairs the differentiation and division of inner mesocarp cells responsible for flesh in grapevine berries. In order to study the inheritance of the mutation and to map the flb locus, 5 segregating populations were created. Progeny plant...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g06-034

    authors: Fernandez L,Doligez A,Lopez G,Thomas MR,Bouquet A,Torregrosa L

    更新日期:2006-07-01 00:00:00

  • Reference transcriptome assembly and annotation for perennial ryegrass.

    abstract::RNA-Seq methodology has been used to generate a comprehensive transcriptome sequence resource for perennial ryegrass, an important temperate pasture grass species. A total of 931 547 255 reads were obtained from libraries corresponding to 19 distinct tissue samples, including both vegetative and reproductive stages of...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2017-0077

    authors: Shinozuka H,Cogan NOI,Spangenberg GC,Forster JW

    更新日期:2017-12-01 00:00:00

  • Gene segregation in induced tetraploid rainbow trout: genetic evidence of preferential pairing of homologous chromosomes.

    abstract::Gene segregation at six protein loci was analysed in progeny from tetraploid males and females obtained by suppression of first mitosis. The triploid full-sib families from five tetraploid males and the diploid gynogenetic lines from four tetraploid females were examined. The proportions of heterozygous gametes (0.83 ...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g88-092

    authors: Diter A,Guyomard R,Chourrout D

    更新日期:1988-08-01 00:00:00

  • Molecular marker analysis of hypoploid regenerants from cultures of barley x Canada wild rye.

    abstract::Canada wild rye (CWR, Elymus canadensis L., 2n = 4x = 28) is a potential source of genes for disease resistance and environmental tolerance in barley (Hordeum vulgare L., 2n = 2x = 14). Tissue cultures were initiated from immature inflorescences of CWR x 'Betzes' barley hybrids to promote CWR introgression into barley...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g96-047

    authors: Dahleen LS

    更新日期:1996-04-01 00:00:00

  • Three new satellite sequences and a mobile element found inside HSP70 introns of the Mediterranean mussel (Mytilus galloprovincialis).

    abstract::We report the characterization of 3 new repetitive sequences from the bivalve mollusc Mytilus galloprovincialis, designated Mg1, Mg2, and Mg3, with monomer lengths of 169, 260, and 70 bp, respectively. The 3 repeats together constitute approximately 7.8% of the M. galloprovincialis genome and were found, together with...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g06-111

    authors: Kourtidis A,Drosopoulou E,Pantzartzi CN,Chintiroglou CC,Scouras ZG

    更新日期:2006-11-01 00:00:00

  • Draft genome sequence, disease-resistance genes, and phenotype of a Paenibacillus terrae strain (NK3-4) with the potential to control plant diseases.

    abstract::Paenibacillus terrae NK3-4 is a plant growth-promoting rhizobacterium that may be useful for controlling plant diseases. We conducted a genomic analysis and identified the genes mediating antimicrobial functions. Additionally, an extracellular antifungal protein component was isolated and identified. The draft genome ...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2018-0113

    authors: Yu WQ,Zheng GP,Qiu W,Yan FC,Liu WZ,Liu WX

    更新日期:2018-10-01 00:00:00

  • Genome and transcriptome analysis of the latent pathogen Lasiodiplodia theobromae, an emerging threat to the cacao industry.

    abstract::Lasiodiplodia theobromae (Pat.) Griffon & Maubl., a member of the family Botryosphaeriaceae, is becoming a significant threat to crops and woody plants in many parts of the world, including the major cacao growing areas. While attempting to isolate Ceratobasidium theobromae, a causal agent of vascular streak dieback (...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2019-0112

    authors: Ali SS,Asman A,Shao J,Balidion JF,Strem MD,Puig AS,Meinhardt LW,Bailey BA

    更新日期:2020-01-01 00:00:00

  • Primate-specific histone variants.

    abstract::Canonical histones (H2A, H2B, H3, and H4) are present in all eukaryotes where they package genomic DNA and participate in numerous cellular processes, such as transcription regulation and DNA repair. In addition to the canonical histones, there are many histone variants, which have different amino acid sequences, poss...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2020-0094

    authors: Ding D,Nguyen TT,Pang MYH,Ishibashi T

    更新日期:2020-11-27 00:00:00

  • Genome evolution of intermediate wheatgrass as revealed by EST-SSR markers developed from its three progenitor diploid species.

    abstract::Intermediate wheatgrass (Thinopyrum intermedium (Host) Barkworth & D.R. Dewey), a segmental autoallohexaploid (2n = 6x = 42), is not only an important forage crop but also a valuable gene reservoir for wheat (Triticum aestivum L.) improvement. Throughout the scientific literature, there continues to be disagreement as...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2014-0186

    authors: Wang RR,Larson SR,Jensen KB,Bushman BS,DeHaan LR,Wang S,Yan X

    更新日期:2015-02-01 00:00:00

  • Standard karyotype of Triticum longissimum and its cytogenetic relationship with T. aestivum.

    abstract::C-banding polymorphism was analyzed in 17 accessions of Triticum longissimum from Israel and Jordan, and a generalized idiogram of this species was established. C-banding analysis was further used to identify two sets of disomic T. aestivum - T. longissimum chromosome addition lines and 13 ditelosomic addition lines a...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g93-098

    authors: Friebe B,Tuleen N,Jiang J,Gill BS

    更新日期:1993-08-01 00:00:00

  • High-density SNP mapping reveals closely linked QTL for resistance to Stagonospora nodorum blotch (SNB) in flag leaf and glume of hexaploid wheat.

    abstract::The genetic control of adult plant resistance to Stagonospora nodorum blotch (SNB) is complex, consisting of genes with minor effects interacting in an additive manner. Earlier studies detected quantitative trait loci (QTL) for flag leaf resistance in successive years on chromosomes 1B, 2A, 2D, and 5B using SSR- and D...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2017-0203

    authors: Francki MG,Walker E,Li DA,Forrest K

    更新日期:2018-02-01 00:00:00

  • Genetic diversity in Elymus caninus as revealed by isozyme, RAPD, and microsatellite markers.

    abstract::Genetic diversity of 33 Elymus caninus accessions was investigated using isozyme, RAPD, and microsatellite markers. The three assays differed in the amount of polymorphism detected. Microsatellites detected the highest polymorphism. Six microsatellite primer pairs generated a total of 74 polymorphic bands (alleles), w...

    journal_title:Genome

    pub_type: 杂志文章

    doi:

    authors: Sun GL,Díaz O,Salomon B,von Bothmer R

    更新日期:1999-06-01 00:00:00

  • QTL mapping of BNYVV resistance from the WB41 source in sugar beet.

    abstract::The most important rhizomania-resistance gene in sugar beet is the Rz1 gene from the Holly Sugar Company in California, the source widely used to breed partially resistant varieties. Other important gene sources are WB41 and WB42, which both originate from Beta vulgaris subsp. maritima collected in Denmark, and which ...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g04-108

    authors: Gidner S,Lennefors BL,Nilsson NO,Bensefelt J,Johansson E,Gyllenspetz U,Kraft T

    更新日期:2005-04-01 00:00:00

  • The mitochondrial genome of Anopheles quadrimaculatus species A: complete nucleotide sequence and gene organization.

    abstract::The complete sequence (15,455 bp) of the mitochondrial DNA of the mosquito Anopheles quadrimaculatus species A is reported. This genome is compact and very A+T rich (77.4% A+T). It contains genes for 2 ribosomal RNAs (rRNAs), 22 transfer RNAs (tRNAs), and 13 subunits of the mitochondrial inner membrane respiratory com...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g93-141

    authors: Mitchell SE,Cockburn AF,Seawright JA

    更新日期:1993-12-01 00:00:00

  • Segmental chromosomal duplications harbouring group IV CONSTANS-like genes in cereals.

    abstract::Comparative mapping is an important component of map-based cloning in large-genome cereal species. We describe evidence of a segmental chromosomal duplication harbouring CONSTANS-like genes in barley that predates the divergence of the Oryzoideae (rice) and Pooideae (brachypodium, barley, wheat) clades, and discuss th...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g09-101

    authors: Cockram J,Howells RM,O'Sullivan DM

    更新日期:2010-03-01 00:00:00

  • Reaction of alien chromosome substitution and addition lines of hard red spring wheat to common root rot and black point.

    abstract::Resistance to common root rot and black point, caused by Cochliobolus sativus, was evaluated in alien chromosome substitution and addition lines of the cultivars 'Cadet' and 'Rescue'. Substitution of chromosome 5B in 'Rescue' with 5Ag from Agropyron elongatum decreased root rot susceptibility to a level intermediate b...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g93-023

    authors: Conner RL,Whelan ED,Laroche A,Thomas JB

    更新日期:1993-02-01 00:00:00

  • Haplotype characterization and markers at the barley Mlo powdery mildew resistance locus as tools for marker-assisted selection.

    abstract::Recessive mlo alleles of the barley Mlo gene confer resistance to almost all known isolates of the powdery mildew fungal pathogen targeting barley (Hordeum vulgare). To characterize haplotypes present in the Mlo chromosomal region of cultivated Mlo and mlo barley genotypes, we conducted a polymorphism search in 3 pred...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g06-044

    authors: Tacconi G,Baldassarre V,Collins NC,Bulgarelli D,Stanca AM,Valè G

    更新日期:2006-08-01 00:00:00

  • Identification and characterization of the Oct4 extended transcriptional regulatory region in Guanzhong dairy goat.

    abstract::The octamer-binding transcription factor 4 gene (Oct4) plays a critical role in maintaining pluripotency during early mammalian embryonic development and self-renewal of embryonic stem (ES) cells. In this study, we cloned the Oct4 cDNA and 2.8-kb regulatory region upstream of the start codon in Guanzhong dairy goat ( ...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g11-047

    authors: Cheng X,Meng S,Deng J,Lai W,Wang H

    更新日期:2011-10-01 00:00:00