Primate-specific histone variants.

Abstract:

:Canonical histones (H2A, H2B, H3, and H4) are present in all eukaryotes where they package genomic DNA and participate in numerous cellular processes, such as transcription regulation and DNA repair. In addition to the canonical histones, there are many histone variants, which have different amino acid sequences, possess tissue-specific expression profiles, and function distinctly from the canonical counterparts. A number of histone variants, including both core histones (H2A/H2B/H3/H4) and linker histones (H1/H5), have been identified to date. Htz1 (H2A.Z) and CENP-A (CenH3) are present from yeasts to mammals, and H3.3 is present from Tetrahymena to humans. In addition to the prevalent variants, others like H3.4 (H3t), H2A.Bbd, and TH2B, as well as several H1 variants, are found to be specific to mammals. Among them, H2BFWT, H3.5, H3.X, H3.Y, and H4G are unique to primates (or Hominidae). In this review, we focus on localization and function of primate- or hominidae-specific histone variants.

journal_name

Genome

journal_title

Genome

authors

Ding D,Nguyen TT,Pang MYH,Ishibashi T

doi

10.1139/gen-2020-0094

subject

Has Abstract

pub_date

2020-11-27 00:00:00

pages

1-10

eissn

0831-2796

issn

1480-3321

pub_type

杂志文章

相关文献

GENOME文献大全
  • Colocalization of antisense RNAs and ribozymes with their target mRNAs.

    abstract::The use of complementary RNA sequences such as antisense RNAs and ribozymes to regulate the expression of specific genes in eukaryotic cells has been well-documented, particularly with their application to both human gene therapy and plant biotechnology. Despite the simplicity of this approach, this technique usually ...

    journal_title:Genome

    pub_type: 杂志文章,评审

    doi:10.1139/g97-802

    authors: Arndt GM,Rank GH

    更新日期:1997-12-01 00:00:00

  • 5S rDNA genome regions of Lens species.

    abstract::The length variability of the nontranscribed spacer (NTS) of the 5S rDNA repeats was analyzed in species of the genus Lens by means of PCR amplification. The NTS ranged from approximately 227 to approximately 952 bp. The polymorphism detected was higher than previous NTS polymorphisms described in this genus. Three NT...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g05-052

    authors: Fernández M,Ruiz ML,Linares C,Fominaya A,Pérez de la Vega M

    更新日期:2005-10-01 00:00:00

  • RAPD-based genetic linkage maps of yellow passion fruit (Passiflora edulis Sims. f. flavicarpa Deg.).

    abstract::A single cross between two clones of passion fruit (Passiflora edulis Sims. f. flavicarpa Deg., 2n = 18) was selected for genetic mapping. The mapping population was composed of 90 F1 plants derived from a cross between 'IAPAR 123' (female parent) and 'IAPAR 06' (male parent). A total of 380 RAPD primers were analyzed...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g02-035

    authors: Carneiro MS,Camargo LE,Coelho AS,Vencovsky R,Rui PL,Stenzel NM,Vieira ML

    更新日期:2002-08-01 00:00:00

  • Transcriptome analysis reveals hybridization-induced genome shock in an interspecific F1 hybrid from Camellia.

    abstract::The combination of two divergent genomes during hybridization can result in "genome shock". Although genome shock has been reported in the hybrids of some herbaceous plants, the pattern and the principle it follows are far from understood, especially in woody plants. Here, the gene expression patterns were remodeled i...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2017-0105

    authors: Zhang M,Liu XK,Fan W,Yan DF,Zhong NS,Gao JY,Zhang WJ

    更新日期:2018-07-01 00:00:00

  • Visualizing DNA domains and sequences by microscopy: a fifty-year history of molecular cytogenetics.

    abstract::This short review presents a historical perspective of chromosome research during the last 50 years. It shows how molecular knowledge and technology of DNA entered cytogenetics step by step making it now daily practice in almost every modern chromosome lab. A crucial milestone in these decades has been the development...

    journal_title:Genome

    pub_type: 杂志文章,评审

    doi:10.1139/g03-107

    authors: de Jong H

    更新日期:2003-12-01 00:00:00

  • Characterization of the hexaploid oat Avena byzantina cv. Kanota monosomic series using C-banding and RFLPs.

    abstract::The establishment of a C-banded karyotype of hexaploid oat (Avena spp., 2n = 6x = 42) has facilitated the cytological characterization of a monosomic series in 'Kanota', an A. byzantina (C. Koch) cultivar. The 'Kanota' series of monosomics analyzed in this study consists of only 12 of the 21 different chromosome-defic...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g93-126

    authors: Jellen EN,Rooney WL,Phillips RL,Rines HW

    更新日期:1993-10-01 00:00:00

  • The Bo1-specific PCR marker AWW5L7 is predictive of boron tolerance status in a range of exotic durum and bread wheats.

    abstract::High soil boron (B) constitutes a major soil problem in many parts of the world, particularly in low-rainfall areas and land under irrigation. Low accumulation of B in the shoot or grain of cereal crops is correlated with the maintenance of biomass production and grain yield under high B conditions, suggesting that th...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/G08-084

    authors: Schnurbusch T,Langridge P,Sutton T

    更新日期:2008-12-01 00:00:00

  • Clonal variation in the parthenogenetic rock lizard Lacerta armeniaca.

    abstract::Genetic diversity at 35 allozyme loci was surveyed in seven populations of Lacerta armeniaca. Fixed heterozygotes were present at 16 loci, with homozygotes at 17 loci. Variation occurred at two loci, one in each of two populations, indicating one widespread clone, one restricted clone, and one apparently restricted cl...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g95-141

    authors: Macculloch RD,Murphy RW,Kupriyanova LA,Darevsky IS,Danielyan FD

    更新日期:1995-12-01 00:00:00

  • Transposition of minisatellite-like DNA in Chironomus midges.

    abstract::Cla elements are a family of tandem repetitive DNA sequences present in the genome of several Chironomus species. Interspersed clusters of Cla elements are widely distributed all over the chromosomes in C. thummi thummi, while they seem to be limited to the centromeric regions in the closely related subspecies C. t. p...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g94-077

    authors: Hankeln T,Rohwedder A,Weich B,Schmidt ER

    更新日期:1994-08-01 00:00:00

  • Mitochondrial DNA variation in cultivated and wild potato species (Solanum spp.).

    abstract::The European cultivated potato, Solanum tuberosum subsp. tuberosum, has 6 related cultivated species and more than 200 wild relatives. In Solanum spp., studies of cytoplasmic organelles have been mainly confined to the plastid DNA composition of cultivated and wild species. In this study, 53 genotypes of 30 potato spe...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g07-042

    authors: Scotti N,Cozzolino S,Cardi T

    更新日期:2007-08-01 00:00:00

  • Families of tandemly repeated DNA elements from horse: cloning, nucleotide sequence, and organization.

    abstract::DNA repeats, revealed initially by digestion of horse DNA with restriction enzymes, were cloned and characterized by cross-hybridization studies and nucleotide sequencing. The Sau-like family of tandem repeats contained two classes of repetitive elements with unit repeats of about 80 bp that shared no sequence similar...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g95-169

    authors: Broad TE,Ede AJ,Forrest JW,Lewis PE,Phua SH,Pugh PA

    更新日期:1995-12-01 00:00:00

  • Genome and transcriptome analysis of the latent pathogen Lasiodiplodia theobromae, an emerging threat to the cacao industry.

    abstract::Lasiodiplodia theobromae (Pat.) Griffon & Maubl., a member of the family Botryosphaeriaceae, is becoming a significant threat to crops and woody plants in many parts of the world, including the major cacao growing areas. While attempting to isolate Ceratobasidium theobromae, a causal agent of vascular streak dieback (...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2019-0112

    authors: Ali SS,Asman A,Shao J,Balidion JF,Strem MD,Puig AS,Meinhardt LW,Bailey BA

    更新日期:2020-01-01 00:00:00

  • Chromosome elimination in germ line-soma differentiation of Acricotopus lucidus (Diptera, Chironomidae).

    abstract::During germ line-soma differentiation in early syncytial embryonic development of the chironomid Acricotopus lucidus, a complement of supernumerary chromosomes, the so-called germ line limited chromosomes (Ks), is excluded from the future somatic nuclei in the course of elimination mitoses. The Ks lag behind in the eq...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g05-103

    authors: Staiber W

    更新日期:2006-03-01 00:00:00

  • Assessment of the genetic diversity and phylogenetic relationships of a temperate bamboo collection by using transferred EST-SSR markers.

    abstract::Polymorphic expressed sequence tag - simple sequence repeat (EST-SSR) markers derived from major cereal crops were used to assess the genetic diversity of the USDA temperate bamboo collection consisting of 92 accessions classified in 11 separate genera and 44 species. A total of 211 bands were detected with a mean num...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g05-022

    authors: Barkley NA,Newman ML,Wang ML,Hotchkiss MW,Pederson GA

    更新日期:2005-08-01 00:00:00

  • Presence of a centromeric filament during meiosis.

    abstract::Spermatocytes at meiotic metaphase I and anaphase I have a characteristic centromeric filament in a variety of vertebrate organisms. This centromeric filament was first demonstrated on mouse spermatocytes and its presence is now extended to spermatocytes from the human, rat, golden hamster, bull, and chicken. The visu...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g91-136

    authors: Solari AJ,Tandler CJ

    更新日期:1991-12-01 00:00:00

  • Molecular cloning, heterologous expression, and phylogenetic analysis of a novel y-type HMW glutenin subunit gene from the G genome of Triticum timopheevi.

    abstract::A novel y-type high molecular weight (HMW) glutenin subunit gene from the G genome of Triticum timopheevi (2n=4x=28, AAGG) was isolated and characterized. Genomic DNA from accession CWI17006 was amplified and a 2200 bp fragment was obtained. Sequence analysis revealed a complete open reading frame including N- and C-t...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/G07-089

    authors: Li X,Zhang Y,Gao L,Wang A,Ji K,He Z,Appels R,Ma W,Yan Y

    更新日期:2007-12-01 00:00:00

  • Molecular genetic description of the cryptic wheat-Aegilops geniculata introgression carrying rust resistance genes Lr57 and Yr40 using wheat ESTs and synteny with rice.

    abstract::The cryptic wheat-alien translocation T5DL.5DS-5MgS(0.95), with leaf rust and stripe rust resistance genes Lr57 and Yr40 transferred from Aegilops geniculata (UgMg) into common wheat, was further analyzed. Molecular genetic analysis using physically mapped ESTs showed that the alien segment in T5DL.5DS-5MgS(0.95) repr...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/G09-076

    authors: Kuraparthy V,Sood S,Gill BS

    更新日期:2009-12-01 00:00:00

  • The mitochondrial genome of Anopheles quadrimaculatus species A: complete nucleotide sequence and gene organization.

    abstract::The complete sequence (15,455 bp) of the mitochondrial DNA of the mosquito Anopheles quadrimaculatus species A is reported. This genome is compact and very A+T rich (77.4% A+T). It contains genes for 2 ribosomal RNAs (rRNAs), 22 transfer RNAs (tRNAs), and 13 subunits of the mitochondrial inner membrane respiratory com...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g93-141

    authors: Mitchell SE,Cockburn AF,Seawright JA

    更新日期:1993-12-01 00:00:00

  • Cytogenetics and characterization of microsatellite loci for a South American pioneer tree species, Croton floribundus.

    abstract::Despite the recent advances in plant population genetic studies, the lack of information regarding pedigree, ploidy level, or mode of inheritance for many polyploids can compromise the analysis of the molecular data produced. The aim of this study was to examine both microsatellite and cytogenetic characteristics of t...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2013-0159

    authors: Silvestrini M,Pinto-Maglio CA,Zucchi MI,dos Santos FA

    更新日期:2013-12-01 00:00:00

  • Construction of a garlic BAC library and chromosomal assignment of BAC clones using the FISH technique.

    abstract::For molecular and cytogenetic studies, two partial bacterial artificial chromosome (BAC) libraries of the garlic cultivar Allium sativum L. 'Danyang' were constructed using high molecular weight (HMW) garlic DNA, the pBAC1-SACB1 vector, and the pIndigoBAC536 vector. The average insert size of the BAC library was about...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g03-012

    authors: Lee HR,Eom EM,Lim YP,Bang JW,Lee DH

    更新日期:2003-06-01 00:00:00

  • Fluorescent in situ hybridization and C-banding analyses of highly repetitive DNA sequences in the heterochromatin of rye (Secale montanum Guss.) and wheat incorporating S. montanum chromosome segments.

    abstract::The molecular characterization of C-banded regions of Secale montanum Guss. by means of in situ hybridization was performed in order to provide new information about their chromosome structure relative to cultivated rye, Secale cereale L. Accurate identification of individual chromosomes was achieved using simultaneou...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g95-101

    authors: Cuadrado A,Jouve N

    更新日期:1995-08-01 00:00:00

  • Analysis of codon usage patterns in Morus notabilis based on genome and transcriptome data.

    abstract::Codons play important roles in regulating gene expression levels and mRNA half-lives. However, codon usage and related studies in multicellular organisms still lag far behind those in unicellular organisms. In this study, we describe for the first time genome-wide patterns of codon bias in Morus notabilis (mulberry tr...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2016-0129

    authors: Wen Y,Zou Z,Li H,Xiang Z,He N

    更新日期:2017-06-01 00:00:00

  • Gene flow, recombination, and positive selection in Stenotrophomonas maltophilia: mechanisms underlying the diversity of the widespread opportunistic pathogen.

    abstract::Stenotrophomonas maltophilia is a global multidrug-resistant human opportunistic pathogen in clinical environments. Stenotrophomonas maltophilia is also ubiquitous in aqueous environments, soil, and plants. Various molecular typing methods have revealed that S. maltophilia exhibits high levels of phenotypic and genoty...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2016-0073

    authors: Yu D,Yin Z,Li B,Jin Y,Ren H,Zhou J,Zhou W,Liang L,Yue J

    更新日期:2016-12-01 00:00:00

  • User Centric Genomics Infrastructure: trends and technologies.

    abstract::Genomics is both data and compute intensive discipline. The success of genomics depends on adequate informatics infrastructure that can address growing data demands and enable a diverse range of resource-intensive computational activities. Designing a suitable Infrastructure is a challenging task, and its success larg...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2020-0096

    authors: Krishna R,Elisseev V

    更新日期:2020-11-20 00:00:00

  • Somatic chimerism, genetic inheritance, and mapping of the fleshless berry (flb) mutation in grapevine (Vitis vinifera L.).

    abstract::The fleshless berry (flb) mutation of grapevine (Vitis vinifera L. 'Ugni Blanc') impairs the differentiation and division of inner mesocarp cells responsible for flesh in grapevine berries. In order to study the inheritance of the mutation and to map the flb locus, 5 segregating populations were created. Progeny plant...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g06-034

    authors: Fernandez L,Doligez A,Lopez G,Thomas MR,Bouquet A,Torregrosa L

    更新日期:2006-07-01 00:00:00

  • Standard karyotype of Triticum longissimum and its cytogenetic relationship with T. aestivum.

    abstract::C-banding polymorphism was analyzed in 17 accessions of Triticum longissimum from Israel and Jordan, and a generalized idiogram of this species was established. C-banding analysis was further used to identify two sets of disomic T. aestivum - T. longissimum chromosome addition lines and 13 ditelosomic addition lines a...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g93-098

    authors: Friebe B,Tuleen N,Jiang J,Gill BS

    更新日期:1993-08-01 00:00:00

  • Development of RNA-seq-based molecular markers for characterizing Thinopyrum bessarabicum and Secale introgressions in wheat.

    abstract::Sequence-based markers have added a new dimension in the efficiency of identifying alien introgressions in wheat. Expressed sequence tag-sequence tagged sites (EST-STS) markers have proved useful in tracing alien chromatin. In this study, we report the development of Thinopyrum bessarabicum- and Secale anatolicum-spec...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2020-0057

    authors: Singh AK,Lo K,Dong C,Zhang P,Trethowan RM,Sharp PJ

    更新日期:2020-11-01 00:00:00

  • Comparative cytogenetic study on Trifolium subterraneum (2n = 16) and Trifolium israeliticum (2n = 12).

    abstract::Changes in chromosome number have played an important role in the evolution of the genus Trifolium. Along with a few species of polyploid origin there are several cases of dysploidy as evidenced by the presence of four basic chromosome numbers (x = 8, 7, 6, 5). Trifolium subterraneum and Trifolium israeliticum are rel...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2013-0055

    authors: Falistocco E,Marconi G,Falcinelli M

    更新日期:2013-06-01 00:00:00

  • The cytogenetics of thelytoky in a predominantly asexual parasitoid wasp with covert sex.

    abstract::Asexual lineages in the parasitoid wasp Lysiphlebus fabarum (Hymenoptera: Braconidae: Aphidiinae) have previously been shown to have occasionally undergone sexual reproduction and recombination with males from related sexual populations. In the present study, the cytogenetic system of asexual females in this species i...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g02-112

    authors: Belshaw R,Quicke DL

    更新日期:2003-02-01 00:00:00

  • Identification and analysis of homoeologous segments of the genomes of rice and Arabidopsis thaliana.

    abstract::Using contiguous genomic DNA sequences of Arabidopsis thaliana, we were able to identify a region of conserved structure in the genome of rice. The conserved, and presumptive homoeologous segments, are 194 kb and 219-300 kb in size in Arabidopsis and rice, respectively. They contain five homologous genes, distinguishe...

    journal_title:Genome

    pub_type: 杂志文章

    doi:

    authors: van Dodeweerd AM,Hall CR,Bent EG,Johnson SJ,Bevan MW,Bancroft I

    更新日期:1999-10-01 00:00:00