PROlocalizer: integrated web service for protein subcellular localization prediction.

Abstract:

:Subcellular localization is an important protein property, which is related to function, interactions and other features. As experimental determination of the localization can be tedious, especially for large numbers of proteins, a number of prediction tools have been developed. We developed the PROlocalizer service that integrates 11 individual methods to predict altogether 12 localizations for animal proteins. The method allows the submission of a number of proteins and mutations and generates a detailed informative document of the prediction and obtained results. PROlocalizer is available at http://bioinf.uta.fi/PROlocalizer/ .

journal_name

Amino Acids

journal_title

Amino acids

authors

Laurila K,Vihinen M

doi

10.1007/s00726-010-0724-y

subject

Has Abstract

pub_date

2011-03-01 00:00:00

pages

975-80

issue

3

eissn

0939-4451

issn

1438-2199

journal_volume

40

pub_type

杂志文章
  • A strong developmental isotope effect in Caenorhabditis elegans induced by 5,5-deuterated lysine.

    abstract::Effects exerted by heavy isotope substitution in biopolymers on the functioning of whole organisms have not been investigated. We report on the decrease of permissive temperature of nematodes fed with bacteria containing 5,5-D2-lysine. We synthesized 5,5-dideuterolysine and, taking advantage of lysine being an essenti...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-017-2386-5

    authors: Korneenko TV,Pestov NB,Hurski AL,Fedarkevich AM,Shmanai VV,Brenna JT,Shchepinov MS

    更新日期:2017-05-01 00:00:00

  • Isolation and antiproliferation of tumor cells by a novel peptide (TC22) from the beetle Tribolium castaneum.

    abstract::Anticancer peptides (ACPs) are biologically anticancer active molecules that are produced by mammals, plants, insects and microorganisms. Here, a new peptide (TC22) with the amino acid sequence MTVVLLLIVLPLLGGVHSSGIL was identified and characterized from the beetle Tribolium castaneum. We found it inhibited the growth...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-018-2666-8

    authors: Liu XD,Zhang FX,Qin ZH,Shan H

    更新日期:2019-02-01 00:00:00

  • Spermine oxidase: ten years after.

    abstract::Spermine oxidase (SMO) was discovered much more recently than other enzymes involved in polyamine metabolism; this review summarizes 10 years of researches on this enzyme. Spermine oxidase (SMO) is a FAD-dependent enzyme that specifically oxidizes spermine (Spm) and plays a dominant role in the highly regulated mammal...

    journal_title:Amino acids

    pub_type: 杂志文章,评审

    doi:10.1007/s00726-011-1014-z

    authors: Cervelli M,Amendola R,Polticelli F,Mariottini P

    更新日期:2012-02-01 00:00:00

  • Changes in free amino acids in the brain during embryonic development in layer and broiler chickens.

    abstract::Developmental changes in the levels of the excitatory amino acids L-glutamate (Glu) and L-Aspartate (Asp) and inhibitory amino acids glycine (Gly) and gamma-amino butyric acid (GABA), as well as taurine and its related amino acids L-methionine (Met), L-cysteine (Cys) and L-serine (Ser) in the brain and pectoralis musc...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-008-0068-z

    authors: Sato M,Tomonaga S,Denbow DM,Furuse M

    更新日期:2009-02-01 00:00:00

  • A mechanistic role for polypeptide hormone receptor lateral mobility in signal transduction.

    abstract::Lateral diffusion of membrane-integral receptors within the plane of the membrane has been postulated to be mechanistically important for signal transduction. Direct measurement of polypeptide hormone receptor lateral mobility using fluorescence photobleaching recovery techniques indicates that tyrosine kinase recepto...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/BF00805831

    authors: Jans DA,Pavo I

    更新日期:1995-06-01 00:00:00

  • Lysine transporters in human trypanosomatid pathogens.

    abstract::In previous studies we characterized arginine transporter genes from Trypanosoma cruzi and Leishmania donovani, the etiological agents of chagas disease and kala azar, respectively, both fatal diseases in humans. Unlike arginine transporters in higher eukaryotes that transport also lysine, these parasite transporters ...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-010-0812-z

    authors: Inbar E,Canepa GE,Carrillo C,Glaser F,Suter Grotemeyer M,Rentsch D,Zilberstein D,Pereira CA

    更新日期:2012-01-01 00:00:00

  • Enzyme promiscuity in earthworm serine protease: substrate versatility and therapeutic potential.

    abstract::Enzymes are the most versatile molecules in the biological world. These amazing molecules play an integral role in the regulation of various metabolic pathways and physiology subsequently. Promiscuity of an enzyme is the capacity to catalyze additional biochemical reactions besides their native one. Catalytic promiscu...

    journal_title:Amino acids

    pub_type: 杂志文章,评审

    doi:10.1007/s00726-015-2162-3

    authors: Verma MK,Pulicherla KK

    更新日期:2016-04-01 00:00:00

  • Comparison of in vitro antioxidant and antiradical activities of L-tyrosine and L-Dopa.

    abstract::Phenolic compounds are interesting because of their antioxidant properties. In the present study, the antioxidant properties of L-tyrosine as a monophenolic and L-Dopa as a diphenolic amino acid were investigated by using different antioxidant assays: (i) 1,1-diphenyl-2-picryl-hydrazyl free radical (DPPH*) scavenging;...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-006-0379-x

    authors: Gülçin I

    更新日期:2007-01-01 00:00:00

  • Mitomycin C modulates DNA-double strand break repair genes in cervical carcinoma cells.

    abstract::In a previous study, we elucidated the apoptotic mechanism mediated via Fas/FasL-dependent pathway in mitomycin C-treated cervical carcinoma cells. In this study, 2-D and MALDI-TOF analyses were performed in order to search mitomycin C-induced modulators in cervical carcinoma cells. Some protein spots down- or up-regu...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-010-0568-5

    authors: Kang YH,Lee KA,Kim JH,Park SG,Yoon DY

    更新日期:2010-11-01 00:00:00

  • O-GlcNAc in cancer biology.

    abstract::O-linked β-N-actylglucosamine (O-GlcNAc) is a carbohydrate post-translational modification on hydroxyl groups of serine and/or threonine residues of cytosolic and nuclear proteins. Analogous to phosphorylation, O-GlcNAcylation plays crucial regulatory roles in a variety of cellular processes. O-GlcNAc was termed a nut...

    journal_title:Amino acids

    pub_type: 杂志文章,评审

    doi:10.1007/s00726-013-1543-8

    authors: Ma Z,Vosseller K

    更新日期:2013-10-01 00:00:00

  • Intercellular protein expression variability as a feature of stem cell pluripotency.

    abstract::The expression of pluripotent stem cell protein markers, self-renewal, the potential to differentiate in cell types of all three germlines and teratoma formation in nude mice form the spectrum of the stringent pluripotency criteria for human stem cells. Currently, intercellular variability is discussed as an additiona...

    journal_title:Amino acids

    pub_type: 杂志文章,评审

    doi:10.1007/s00726-013-1599-5

    authors: Rosner M,Hengstschläger M

    更新日期:2013-12-01 00:00:00

  • A concise, asymmetric synthesis of (2R,3R)-3-hydroxyaspartic acid.

    abstract::3-Hydroxyaspartic acid and its derivatives are found both in the free form and as peptide constituents in various microorganisms and fungi. Considering the biological importance of this amino acid and its potential utility as a multifunctional building block in organic syntheses, we have developed a short-step, asymme...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-007-0595-z

    authors: Khalaf JK,Datta A

    更新日期:2008-08-01 00:00:00

  • Post exercise carbohydrate-protein supplementation: phosphorylation of muscle proteins involved in glycogen synthesis and protein translation.

    abstract::The enzymes Akt, mTOR, p70(S6K), rpS6, GSK3, and glycogen synthase interact in the control of protein and/or glycogen synthesis in skeletal muscle, and each has been found to respond to exercise and nutrient supplementation. In the present study, we tested the hypothesis that nutrient supplementation post exercise, in...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-007-0620-2

    authors: Ivy JL,Ding Z,Hwang H,Cialdella-Kam LC,Morrison PJ

    更新日期:2008-06-01 00:00:00

  • Hypotaurine disproportionation reaction: identification of products.

    abstract::Hypotaurine, concentrated under reduced pressure in HCl solution, partially (30-40%) degrades into taurine (about 30%), 2-aminoethyl-2-aminoethanethiolsulfonate (about 10%) and ethanolamine. The degradation products were identified using LC/APCI-MS, NMR, amino acid analysis and various chromatographies. The identities...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/BF01320900

    authors: Duprè S,Spirito A,Pinnen F,Sugahara K,Kodama H

    更新日期:1998-01-01 00:00:00

  • Enhanced osteoblast adhesion on transglutaminase 2-crosslinked fibronectin.

    abstract::Fibronectin (FN) is a cell adhesion protein that binds integrins in a process also involving the protein-crosslinking enzyme transglutaminase 2 (TG2) as a co-receptor. The cell-adhesive property of TG2 has been linked to a complex formation with FN and to its ability to crosslink and polymerize FN on the cell surface....

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-008-0125-7

    authors: Forsprecher J,Wang Z,Nelea V,Kaartinen MT

    更新日期:2009-04-01 00:00:00

  • D-Aspartyl residue in a peptide can be liberated and metabolized by pig kidney enzymes.

    abstract::The presence of an enzyme activity which hydrolyzes glycyl-D-aspartate was found in the homogenates of pig kidney cortex. The activity was inhibited by metal chelating agents and cilastatin, suggesting that the enzyme was a cilastatin-sensitive metallo-peptidase. Of the two hydrolysis products,D-aspartate was found to...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/BF00806591

    authors: Kera Y,Funabashi K,Matsumoto T,Watanabe T,Nagasaki H,Yamada R

    更新日期:1996-06-01 00:00:00

  • Total plasma homocysteine: influence of some common physiological variables.

    abstract::The purpose of this study was to investigate H(e) concentration in plasma from 80 healthy donors in relation to age (6 newborns are also included), sex, daily variation (9, 11 a.m.; 2, 6, 12 p.m.) and a period of 5 subsequent months. A significant correlation (r = 0.63, p < 0.001) was observed between plasma H(e) and ...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/BF00806188

    authors: Fermo I,De Vecchi E,D'Angelo SV,D'Angelo A,Paroni R

    更新日期:1993-02-01 00:00:00

  • Glycine metabolism in animals and humans: implications for nutrition and health.

    abstract::Glycine is a major amino acid in mammals and other animals. It is synthesized from serine, threonine, choline, and hydroxyproline via inter-organ metabolism involving primarily the liver and kidneys. Under normal feeding conditions, glycine is not adequately synthesized in birds or in other animals, particularly in a ...

    journal_title:Amino acids

    pub_type: 杂志文章,评审

    doi:10.1007/s00726-013-1493-1

    authors: Wang W,Wu Z,Dai Z,Yang Y,Wang J,Wu G

    更新日期:2013-09-01 00:00:00

  • Biochemical mechanisms for a possible involvement of the transglutaminase activity in the pathogenesis of the polyglutamine diseases: minireview article.

    abstract::Transglutaminases are a family of enzymes which show the common capacity to catalyse the cross-linking of protein substrates. Some members of this family of enzymes are also capable to catalyse other chemical reactions for the cell life. The distribution and the role of these enzymes have been studied in numerous cell...

    journal_title:Amino acids

    pub_type: 杂志文章,评审

    doi:10.1007/s00726-004-0089-1

    authors: Pepe I,Occhino E,Cella G,Luongo A,Guardascione F,Gentile V

    更新日期:2004-07-01 00:00:00

  • Taurine protected myocardial mitochondria injury induced by hyperhomocysteinemia in rats.

    abstract::Taurine can protect against cardiovascular diseases, whereas elevated levels of plasma homocysteine are associated with atherosclerotic and thromboembolic cardiovascular diseases. To illustrate the effects of taurine on hyperhomocysteinemia, we observed the myocardial mitochondria dysfunction in the rats with hyperhom...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-004-0096-2

    authors: Chang L,Xu J,Yu F,Zhao J,Tang X,Tang C

    更新日期:2004-08-01 00:00:00

  • Cell specificity and molecular mechanism of antibacterial and antitumor activities of carboxyl-terminal RWL-tagged antimicrobial peptides.

    abstract::Antimicrobial peptides (AMPs) constitute a diverse class of naturally occurring or synthetic antimicrobial molecules that have potential for use in the treatment of drug-resistant infections. Several undesirable properties of AMPs, however, may ultimately hinder their development as antimicrobial agents. Thus, new syn...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-014-1761-8

    authors: Dong N,Zhu X,Lv YF,Ma QQ,Jiang JG,Shan AS

    更新日期:2014-09-01 00:00:00

  • Analysis of amino acids as DABS-derivatives with a sensitivity to the femtomole level using RP-HPLC narrow-bore columns.

    abstract::In this paper we report the complete separation of amino acids as DABS-derivatives using a 3µm Supelcosil LC-18 (25 cm × 2.1 mm I.D.) narrowbore column. The system described makes it possible to perform the analysis of DABS-amino acids with a sensitivity to the femtomole level. We have also studied the conditions nece...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/BF00806005

    authors: Stocchi V,Palma F,Piccoli G,Biagiarelli B,Magnani M,Masat L,Cucchiarini L

    更新日期:1992-10-01 00:00:00

  • Immunohistochemical localization of D-aspartate oxidase in porcine peripheral tissues.

    abstract::D-Aspartate (D-Asp) is an endogenous substance in mammals. Degradation of D-Asp is carried out only by D-aspartate oxidase (DDO). We measured DDO activity in porcine tissues, and produced an anti-porcine DDO antibody to examine the cellular localization of DDO. All the tissues examined showed DDO activities, whereas t...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-010-0785-y

    authors: Yamamoto A,Tanaka H,Ishida T,Horiike K

    更新日期:2011-07-01 00:00:00

  • Arginine revisited: minireview article.

    abstract::Arginine is a precursor of proteins and employed in urea synthesis. It is also the precursor of many other compounds, such as creatine, nitric oxide, polyamines, agmatine, proline. In this review, its transport and that of other basic amino acids are examined, along with its transformation into nitric oxide, agmatine ...

    journal_title:Amino acids

    pub_type: 杂志文章,评审

    doi:10.1007/s00726-004-0081-9

    authors: Grillo MA,Colombatto S

    更新日期:2004-07-01 00:00:00

  • Cysteine homeostasis under inhibition of protein synthesis in Escherichia coli cells.

    abstract::Increased intracellular cysteine poses a potential danger to cells due to the high ability of cysteine to reduce free iron and promote the Fenton reaction. Here, we studied ways to maintain cysteine homeostasis in E. coli cells while inhibiting protein synthesis with valine or chloramphenicol. When growing wild-type b...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-019-02795-2

    authors: Smirnova GV,Tyulenev AV,Bezmaternykh KV,Muzyka NG,Ushakov VY,Oktyabrsky ON

    更新日期:2019-11-01 00:00:00

  • Functional roles of agmatinase during the peri-implantation period of pregnancy in sheep.

    abstract::This study investigated the effect of agmatine (Agm) in proliferation of ovine trophecdoderm cells (oTr1) as well as the importance of the arginine decarboxylase (ADC) and agmatinase (AGMAT) alternative pathway for synthesis of polyamines in ovine conceptuses during the peri-implantation period of pregnancy. Morpholin...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-017-2515-1

    authors: Lenis YY,Elmetwally MA,Tang W,Satterfield C,Dunlap K,Wu G,Bazer FW

    更新日期:2018-02-01 00:00:00

  • The effect of tryptophan administration on ileum contractility and oxidant status in mice.

    abstract::L-tryptophan (TRP) is the precursor amino acid for the synthesis of serotonin (5-HT). 5-HT is effective both on the food intake and gastrointestinal system contractility. The aim of this study was to search the effects of systemic TRP treatment on 5-HT levels of ileum and searching the effect of ileal contractility an...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-006-0339-5

    authors: Ozer C,Gönül B,Ercan ZS,Take G,Erdoğan D

    更新日期:2007-01-01 00:00:00

  • Central L-arginine reduced stress responses are mediated by L-ornithine in neonatal chicks.

    abstract::Recently, we observed that central administration of L-arginine attenuated stress responses in neonatal chicks, but the contribution of nitric oxide (NO) to this response was minimal. The sedative and hypnotic effects of L-arginine may be due to L-arginine itself and/or its metabolites, excluding NO. To clarify the me...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-007-0617-x

    authors: Suenaga R,Yamane H,Tomonaga S,Asechi M,Adachi N,Tsuneyoshi Y,Kurauchi I,Sato H,Denbow DM,Furuse M

    更新日期:2008-06-01 00:00:00

  • Multi-omic approach decodes paradoxes of the triple-negative breast cancer: lessons for predictive, preventive and personalised medicine.

    abstract::Breast cancer epidemic in the early twenty-first century results in around two million new cases and half-a-million of the disease-related deaths registered annually worldwide. A particularly dramatic situation is attributed to some specific patient subgroups such as the triple-negative breast cancer (TNBC). TNBC is a...

    journal_title:Amino acids

    pub_type: 杂志文章

    doi:10.1007/s00726-017-2524-0

    authors: Golubnitschaja O,Filep N,Yeghiazaryan K,Blom HJ,Hofmann-Apitius M,Kuhn W

    更新日期:2018-04-01 00:00:00

  • The effect of acute taurine ingestion on 4-km time trial performance in trained cyclists.

    abstract::Taurine (TAU) has been shown to improve exercise time to exhaustion and 3-km running performance; however, no studies have considered the effect of acute TAU ingestion on short duration cycling time trial (TT) performance. The aim of this study was to determine the effects of a single oral acute dose of 1000 mg of TAU...

    journal_title:Amino acids

    pub_type: 杂志文章,随机对照试验

    doi:10.1007/s00726-016-2282-4

    authors: Ward R,Bridge CA,McNaughton LR,Sparks SA

    更新日期:2016-11-01 00:00:00