Concentration of viruses from environmental waters using nanoalumina fiber filters.

Abstract:

:Human viral contamination in drinking and recreational water may persist for extensive periods of time and cause a significant health risk concern. The aim of this study is to evaluate a viral recovery method using a new electropositive charged nanoalumina filter and to compare results with the widely used negatively charged HAWP filter by Millipore Inc. The recovery of infectious recombinant adenovirus type 5 (rAd5) was tested using the Fluorescence-Activated Cell Sorting (FACS) assay, in parallel with viral genomes recovery assay by quantitative PCR (qPCR). The mean infectivity recoveries were 82-91% by nanoalumina filters eluted with 3% beef extract (BE, pH 6.0), and 78-90% by HAWP filters eluted with 3% BE (pH 9.0), respectively, from 1L of environmental samples seeded with 1 pfu/mL rAd5. The mean genome recoveries were 16-35% by nanoalumina filters eluted with BE (pH 6.0), and 29-66% by HAWP filters eluted with NaOH (pH 10.8) from different types of water, respectively. Water quality, concentration of viruses, filters, and elution buffers are factors that determine the viral recovery efficiencies. The nanoalumina filters also had higher filtration rates than HAWP filters for large volumes of environmental water samples (up to 10 L), thus, have an advantage in concentrating infectious viruses from environments without pre-filtration, adjusting pH or adding multivalent cations.

journal_name

J Microbiol Methods

authors

Li D,Shi HC,Jiang SC

doi

10.1016/j.mimet.2010.01.018

subject

Has Abstract

pub_date

2010-04-01 00:00:00

pages

33-8

issue

1

eissn

0167-7012

issn

1872-8359

pii

S0167-7012(10)00035-7

journal_volume

81

pub_type

杂志文章
  • Laser interferometric and cultivation methods for measurement of colistin/ampicilin and saponin interactions with smooth and rough of Proteus mirabilis lipopolysaccharides and cells.

    abstract::Laser interferometry is commonly used in permeability studies of soluble substances. In this study a modification that allowed testing partially insoluble mixtures is presented. The modification relies on the measurement of diffusion from 1% agarose gel. As a model for this study, two Proteus mirabilis strains were us...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2009.01.020

    authors: Arabski M,Wasik S,Dworecki K,Kaca W

    更新日期:2009-05-01 00:00:00

  • Chemotactic responses of the fish-parasitic scuticociliate Philasterides dicentrarchi to blood and blood components of the turbot Scophthalmus maximus, evaluated using a new microplate multiassay.

    abstract::This study describes a new capillary-type microplate multiassay for characterization of protozoal chemotactic responses, allowing up to 32 assays to be run simultaneously. We used the new multiassay to evaluate the chemoattractant activity of turbot blood components and turbot cells for the facultative parasite Philas...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2004.04.018

    authors: Paramá A,Iglesias R,Alvarez MF,Sanmartín ML,Leiro J

    更新日期:2004-09-01 00:00:00

  • Microarray and allele specific PCR detection of point mutations in Mycobacterium tuberculosis genes associated with drug resistance.

    abstract::Global public health is threatened by the emergence of potentially dangerous antibiotic drug-resistant strains of Mycobacterium tuberculosis. Point mutations in certain M. tuberculosis genes are associated with the resistance of M. tuberculosis strains to antibiotic drugs. The purpose of this study was to develop a su...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2005.04.026

    authors: Tang X,Morris SL,Langone JJ,Bockstahler LE

    更新日期:2005-12-01 00:00:00

  • Development of a novel fluorescent microbead-based immunoassay and comparison with three enzyme-linked immunoassays for detection of anti-Erysipelothrix spp. IgG antibodies in pigs with known and unknown exposure.

    abstract::A novel fluorescent microbead immunoassay (FMIA) using the recombinant polypeptide SpaA415 was developed for detection of anti-Erysipelothrix spp. IgG in pig sera. The diagnostic performance of the FMIA was evaluated on samples from pigs with known and unknown Erysipelothrix spp. exposure and compared to an in-house e...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2012.07.014

    authors: Giménez-Lirola LG,Xiao CT,Halbur PG,Opriessnig T

    更新日期:2012-10-01 00:00:00

  • Epidemiological investigation and glycotyping of clinical Pseudomonas aeruginosa isolates from patients with cystic fibrosis by mass spectrometry: association with multiple drug resistance.

    abstract::The aim of the present investigation was to develop a novel approach for rapid identification and differentiation of Pseudomonas aeruginosa clones from Canadian cystic fibrosis patients by capillary electrophoresis-mass spectrometry. We screened P. aeruginosa isolates for lipopolysaccharide structure and presence/abse...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2008.10.008

    authors: Altman E,Wang Z,Aaron SD,Liu X,Vandemheen KL,Ferris W,Giesbrecht T,Li J

    更新日期:2009-02-01 00:00:00

  • Evaluation of diffusion and dilution methods to determine the antibacterial activity of plant extracts.

    abstract::The aim of this study was to evaluate diffusion and dilution methods for determining the antibacterial activity of plant extracts and their mixtures. Several methods for measurement of the minimal inhibitory concentration (MIC) of a plant extract are available, but there is no standard procedure as there is for antibi...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2010.02.004

    authors: Klancnik A,Piskernik S,Jersek B,Mozina SS

    更新日期:2010-05-01 00:00:00

  • Correction pen based paper fluidic device for the detection of multiple gene targets of Leptospira using Loop Mediated Isothermal Amplification.

    abstract::Paper-based nucleic acid testing techniques are increasingly in demand. Hence, we have developed a simple and cheap paper fluidic device to detect multiple gene targets in Leptospira. Fluidic channels of the penta-clover device are drawn using a correction pen on Whatman filter paper 1. The fluid blocks the pores of t...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2020.105962

    authors: Varsha V,Aishwarya S,Murchana S,Naveen G,Ramya M,Rathinasabapathi P

    更新日期:2020-07-01 00:00:00

  • A practical method for subtyping of Streptococcus agalactiae serotype III, of human origin, using rolling circle amplification.

    abstract::Group B streptococcus (GBS; Streptococcus agalactiae) serotype III is one of the most common and virulent serotypes of the species. It can be divided into several subtypes, which vary in their distribution among invasive isolates from different patient groups. In this study, we used 91 well-characterized GBS serotype ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2007.03.010

    authors: Tong Z,Kong F,Wang B,Zeng X,Gilbert GL

    更新日期:2007-07-01 00:00:00

  • Identification and profiling of volatile metabolites of the biocontrol fungus Trichoderma atroviride by HS-SPME-GC-MS.

    abstract::In the present study we describe a method, which is based on solid phase microextraction (SPME) coupled to gas chromatography-mass spectrometry (GC-MS) and which can be used for the profiling of microbial volatile organic compounds (MVOCs) in the headspace (HS) of cultures of filamentous fungi. The method comprises th...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2010.03.011

    authors: Stoppacher N,Kluger B,Zeilinger S,Krska R,Schuhmacher R

    更新日期:2010-05-01 00:00:00

  • Detection and typing of Helicobacter pylori cagA/vacA genes by radioactive, one-step polymerase chain reaction in stool samples from children.

    abstract::The detection and molecular typing of Helicobacter pylori virulence genes in human stool specimens by polymerase chain reaction (PCR) require an adequate amount of bacterial DNA and an appropriately adjusted PCR protocol. DNA was isolated from stool samples of 39 H. pylori-infected and nine uninfected Colombian childr...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/s0167-7012(02)00158-6

    authors: Sicinschi LA,Correa P,Bravo LE,Schneider BG

    更新日期:2003-02-01 00:00:00

  • Relationship between conventional culture and flow cytometry for the diagnosis of urinary tract infection.

    abstract:BACKGROUND:Urine culture is the gold standard for the diagnosis of urinary tract infections (UTI). The use of flow cytometry analyzers (FCA) prior to culture allows for the quantification and recognition of cell components in urine to be automated and makes it possible to relate these data to the urine pathogens subseq...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2017.03.010

    authors: García-Coca M,Gadea I,Esteban J

    更新日期:2017-06-01 00:00:00

  • Isolation and concentration of Salmonellae with an immunoaffinity column.

    abstract::A method for rapidly and selectively isolating Salmonellae from buffer solutions and concentrating the bacteria by a factor of approximately 500 was developed. Anti-Salmonellae antibody was covalently linked to 40 microm polyacrylamide beads to prepare a solid phase with affinity for the bacteria. The beads were packe...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/s0167-7012(03)00163-5

    authors: Brewster JD

    更新日期:2003-10-01 00:00:00

  • An integrated culture and real-time PCR method to assess viability of disinfectant treated Bacillus spores using robotics and the MPN quantification method.

    abstract::Using robotics and the MPN technique, a 96-microwell method was developed to compare two procedures for enumeration of viable chlorine-treated B. atrophaeus spores: broth-culture enrichment followed by real-time polymerase chain reaction analysis; and filter plating on agar. Recoveries of chlorine-treated spores were ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2007.07.011

    authors: Varughese EA,Wymer LJ,Haugland RA

    更新日期:2007-10-01 00:00:00

  • Random tag insertions by Transposon Integration mediated Mutagenesis (TIM).

    abstract::Transposon Integration mediated Mutagenesis (TIM) is a broadly applicable tool for protein engineering. This method combines random integration of modified bacteriophage Mu transposons with their subsequent defined excision employing type IIS restriction endonuclease AarI. TIM enables deletion or insertion of an arbit...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2008.06.017

    authors: Hoeller BM,Reiter B,Abad S,Graze I,Glieder A

    更新日期:2008-10-01 00:00:00

  • A new chromogenic agar medium for detection of potentially virulent Yersinia enterocolitica.

    abstract::Several outbreaks of foodborne yersiniosis have been documented and this disease continues to be source of infections transmitted through foods. The selective agars most commonly used to isolate Yersinia enterocolitica in clinical, food and environmental samples, cefsulodin-irgasan-novobiocin (CIN) and MacConkey (MAC)...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2007.11.019

    authors: Weagant SD

    更新日期:2008-02-01 00:00:00

  • Validation of reference genes for quantitative gene expression analysis in Ralstonia pseudosolanacearum CQPS-1 under environment stress.

    abstract::Quantitative real-time reverse transcriptase PCR (qRT-PCR) has become the method choice for quantification of gene expression changes, however, the accuracy of the method depends on the stability of reference genes. Ralstonia pseudosolanacearum (R. pseudosolanacearum) is an important plant pathogen, infecting >450 pla...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2018.04.004

    authors: Yang L,Chen J,Liu Y,Zhang S,Li S,Ding W

    更新日期:2018-05-01 00:00:00

  • The use of the cMyc epitope tag can be problematic for protein detection in Legionella pneumophila.

    abstract::In various recent experiments with respect to protein secretion by L. pneumophila, protein detection based on the cMyc-tag seemed to be problematic. For one specific protein, we studied the reason for this problem in more detail by comparing protein expression in the presence and absence of the cMyc-tag. We demonstrat...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2004.05.010

    authors: De Buck E,Lebeau I,Van Mellaert L,Geukens N,Anné J,Lammertyn E

    更新日期:2004-10-01 00:00:00

  • qPCR assays to quantify genes and gene expression associated with microbial perchlorate reduction.

    abstract::Quantitative PCR (qPCR) assays targeting cld (developed in this work) and pcrA (previously described) were used to quantify these perchlorate-related genes in a perchlorate-reducing enrichment culture. Transcript copies were quantified in perchlorate-reducing Rhodocyclaceae strain JDS4. Oxygen and nitrate inhibited ex...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2010.09.002

    authors: De Long SK,Kinney KA,Kirisits MJ

    更新日期:2010-11-01 00:00:00

  • Detection of aminotransferase activity of Propionibacterium freudenreichii after SDS-PAGE.

    abstract::Aminotransferases (ATs) had previously been detected after native electrophoresis. We show now that aminotransferase(s) of Propionibacterium freudenreichii can be detected after sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE). Moreover, it retained a high activity (84%) in the presence of 0.23% S...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/s0167-7012(02)00060-x

    authors: Thierry A,Maillard MB,Lortal S

    更新日期:2002-09-01 00:00:00

  • Development of an amperometric immunosensor for detection of staphylococcal enterotoxin type A in cheese.

    abstract::This paper reports a novel electrochemical immunosensor for the sensitive detection of staphylococcal enterotoxin A (SEA) based on self-assembly monolayer (SAM) and protein A immobilization on gold electrode. Three different methods of protein A immobilization were tested: physical adsorption, cross-linking using glut...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2012.05.016

    authors: Pimenta-Martins MG,Furtado RF,Heneine LG,Dias RS,Borges Mde F,Alves CR

    更新日期:2012-10-01 00:00:00

  • An array of multiplex PCR assays for detection of staphylococcal chromosomal cassette mec (SCCmec) types among staphylococcal isolates.

    abstract::Staphylococcal Cassette Chromosome mec (SCCmec) element plays a key role in development of resistance by carrying different resistance factors. Therefore, routine and rapid diagnostic approach is considered advantageous for the easy detection of SCCmec elements. So, here we have described the use of three sets of mult...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2019.105733

    authors: Bhowmik D,Das BJ,Pandey P,Chetri S,Chanda DD,Bhattacharjee A

    更新日期:2019-11-01 00:00:00

  • Exopolysaccharide assay in Escherichia coli microcolonies using a cleavable fusion protein of GFP-labeled carbohydrate-binding module.

    abstract::A fused protein composed of a carbohydrate-binding module and green fluorescence protein (GFP) was developed to measure the exopolysaccharides (EPShs) present in Escherichia coli microcolonies. The cleavage of the GFP part of this protein using a site-specific protease allowed for the non-invasive and quantitative eva...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2015.05.013

    authors: Ojima Y,Suparman A,Nguyen MH,Sakka M,Sakka K,Taya M

    更新日期:2015-07-01 00:00:00

  • Development of a rapid quantitative PCR assay for direct detection and quantification of culturable and non-culturable Escherichia coli from agriculture watersheds.

    abstract::A real-time quantitative polymerase chain reaction (Q-PCR) assay was developed for detecting and quantifying Escherichia coli in water samples from agricultural watersheds. The assay included optimization of DNA extraction and purification from water samples, and Q-PCR amplification conditions using newly designed spe...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2007.02.016

    authors: Khan IU,Gannon V,Kent R,Koning W,Lapen DR,Miller J,Neumann N,Phillips R,Robertson W,Topp E,van Bochove E,Edge TA

    更新日期:2007-06-01 00:00:00

  • Use of an alternative Archaea-specific probe for methanogen detection.

    abstract::An alternative 16S rRNA-targeted oligonucleotide probe specific for Archaea was developed and used for detection of methanogens in anaerobic reactors. The designed probe was checked for its specificity by computer-aided comparative sequence analysis. For in situ application, optimal stringency conditions were adjusted...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2004.11.017

    authors: Jupraputtasri W,Boonapatcharoen N,Cheevadhanarak S,Chaiprasert P,Tanticharoen M,Techkarnjanaruk S

    更新日期:2005-04-01 00:00:00

  • A novel nucleic lateral flow assay for screening of PHA-producing haloarchaea.

    abstract::Polyhydroxyalkanoates (PHAs) are important for biodegradable plastic production, and prokaryotes play a very important role in PHA production. PHA synthase is a key enzyme for the polymerization of PHAs. There are four classes of PHA synthase. The phaC gene is necessary for the production of all classes of PHA synthas...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2015.06.012

    authors: Muangsuwan W,Ruangsuj P,Chaichanachaicharn P,Yasawong M

    更新日期:2015-09-01 00:00:00

  • Comparison of procedures for the extraction of supernatants and cytotoxicity tests in Vero cells, applied to assess the toxigenic potential of Bacillus spp. and Lactobacillus spp., intended for use as probiotic strains.

    abstract::Interest in using Bacillus strains as probiotic components of animal feeds has grown in recent years. However, some of these strains, especially those taxonomically related to the Bacillus cereus group, may have enterotoxigenic activity. Assessment of their toxigenic potential by well-established and robust protocols ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2014.05.019

    authors: Blanch AR,Méndez J,Castel S,Reina M

    更新日期:2014-08-01 00:00:00

  • A simple methodology to collect culturable bacteria from feces of Anopheles darlingi (Diptera: Culicidae).

    abstract::A simple methodology based in a modified mosquito cage with a Petri dish containing culture medium was successfully used as an alternative method to the traditional digestive tract dissection protocol to collect bacteria from the feces of the mosquito Anopheles darlingi. ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2017.08.004

    authors: Arruda A,Ferreira GS,Lima NCDS,Santos Júnior AD,Custódio MGF,Benevides-Matos N,Ozaki LS,Stabeli RG,Silva AA

    更新日期:2017-10-01 00:00:00

  • Agrobacterium-mediated transformation of the white-rot fungus Physisporinus vitreus.

    abstract::The biotechnologically important white-rot fungus Physisporinus vitreus was co-cultivated with Agrobacterium tumefaciens AGL-1 carrying plasmids with nourseothricin resistance as the selectable marker gene and red fluorescence protein as a visual marker. Mitotically stable transformed isolates were obtained showing re...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2013.09.001

    authors: Schubert M,Stührk C,Fuhr MJ,Schwarze FW

    更新日期:2013-11-01 00:00:00

  • Evaluation of FT-IR spectroscopy as a tool to quantify bacteria in binary mixed cultures.

    abstract::Fourier-transform infrared (FT-IR) spectroscopy is known as a high-resolution method for the rapid identification of pure cultures of microorganisms. Here, we evaluated FT-IR as a method for the quantification of bacterial populations in binary mixed cultures consisting of Pseudomonas putida and Rhodococcus ruber. A c...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2011.05.001

    authors: Schäwe R,Fetzer I,Tönniges A,Härtig C,Geyer W,Harms H,Chatzinotas A

    更新日期:2011-08-01 00:00:00

  • Development and validation of a droplet digital PCR assay for the detection and quantification of Bartonella species within human clinical samples.

    abstract::This report describes the development, optimization, and validation of a ddPCR assay for the detection of Bartonella spp. DNA within several sample matrices, including clinical blood samples from patients with or without documented Bartonella spp. bacteremia. The Bartonella spp. ddPCR assay was developed based upon pr...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2020.106022

    authors: Maggi RG,Richardson T,Breitschwerdt EB,Miller JC

    更新日期:2020-09-01 00:00:00