Development of species identification tests targeting the 16S ribosomal RNA coding region in mitochondrial DNA.

Abstract:

:This report describes the development of a species testing system based on the diversity of nucleotide sequences in mitochondrial DNA (mtDNA) among species. Five species, human, cow, pig, dog, and cat, were considered. The partial nucleotide sequences in 16S ribosomal RNA coding region were chosen as the target for discriminating the species. The sequence diversities of this approximately 400 bp long region ranged from 15.7 to 24.1% among the five species. Sequencing analysis of this target on 50 individuals of each species (53 for dogs) revealed that the nucleotide sequences were well preserved within species. Species-specific PCR for each species was also designed, and satisfactory results with regard to both sensitivity and specificity were obtained. A validation study with DNA extracted from bovine bone exposed to the environment revealed that the PCRs designed in this study worked correctly. From the results obtained, it was shown that this testing system could be a good tool for species identification. One successful case report is also demonstrated.

journal_name

Int J Legal Med

authors

Imaizumi K,Akutsu T,Miyasaka S,Yoshino M

doi

10.1007/s00414-006-0127-5

subject

Has Abstract

pub_date

2007-05-01 00:00:00

pages

184-91

issue

3

eissn

0937-9827

issn

1437-1596

journal_volume

121

pub_type

杂志文章
  • Forensic identification of urine samples: a comparison between nuclear and mitochondrial DNA markers.

    abstract::Urine samples from 20 male volunteers of European Caucasian origin were stored at 4 degrees C over a 4-month period in order to compare the identification potential of nuclear DNA (nDNA) and mitochondrial DNA (mtDNA) markers. The amount of nDNA recovered from urines dramatically declined over time. Consequently, nDNA ...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-005-0004-7

    authors: Castella V,Dimo-Simonin N,Brandt-Casadevall C,Robinson N,Saugy M,Taroni F,Mangin P

    更新日期:2006-03-01 00:00:00

  • A dangerous design for a mountain bike.

    abstract::The case of a man's death as a consequence of an accident with a mountain bike was examined. Despite only slight external injuries, a general examination revealed the existence of a rupture of the diaphragm which was the ultimate cause of death. The discussion reconstructs the way the accident occurred and briefly ana...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s004140100237

    authors: Alvarez-Segui M,Castello-Ponce A,Verdu-Pascual F

    更新日期:2001-12-01 00:00:00

  • Medico-legal assessment of methamphetamine and amphetamine serum concentrations-what can we learn from survived intoxications?

    abstract::Medico-legal experts are increasingly enlisted to assess the methamphetamine and amphetamine serum concentrations after a criminal offense. However, since criminal users rarely provide useful information to medico-legal experts regarding the substances abused, when the substance(s) was/were used, dose of ingestion too...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-017-1607-5

    authors: Weber M,Lessig R,Richter C,Ritter AP,Weiß I

    更新日期:2017-09-01 00:00:00

  • Expression of heat-shock protein 70 (Hsp70) in the respiratory tract and lungs of fire victims.

    abstract::Immunohistochemical investigation of the respiratory tract and lungs of 63 fire victims revealed a statistically significant enhanced expression of heat-shock protein 70 (Hsp70) in the epiglottis, the trachea, and the main and the peripheral bronchi compared with a control group. In the fire victims, a strong expressi...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-006-0105-y

    authors: Marschall S,Rothschild MA,Bohnert M

    更新日期:2006-11-01 00:00:00

  • Genomic polymorphism in North-western Indian population based on autosomal STR's: a population data study.

    abstract::Genetic diversity indices and forensic parameters at 20 autosomal short tandem repeat (STR) loci were evaluated in 541 unrelated individuals of north-western Indian state Rajasthan. In total, 243 alleles were observed with an average of 12.15 alleles per locus. The most polymorphic and discriminative locus was Penta E...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-020-02330-z

    authors: Kumar R,Kumar A,Kumawat RK,Tilawat AK

    更新日期:2020-06-05 00:00:00

  • Crack propagation through sandwich bones due to low-velocity projectile impact.

    abstract::Projectile impact in sandwich bones typically results in formation of conoidal wounds exhibiting a larger region of damage on the inner cortical plate termed the bevel. To date, a number of hypotheses have been put forward to explain the formation of this wound type. The plug and spall hypothesis suggests that the con...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-019-02086-1

    authors: Rickman JM,Shackel J

    更新日期:2019-09-01 00:00:00

  • Victims of lethal hypothermia have decreased levels of thrombomodulin in myocardium and urine.

    abstract::Severe cold stress has been shown to cause changes in the expression and secretion of thrombomodulin (TM), an endothelial protein regulating haemostasis and inflammation. To further evaluate TM as a cold stress indicator, relative TM mRNA and TM protein levels in the myocardium and the concentrations of TM in serum an...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-014-1138-2

    authors: Pakanen L,Kaija H,Kortelainen ML,Särkioja T,Porvari K

    更新日期:2015-03-01 00:00:00

  • ABH-related antigens in human male genital tract. A histochemical examination.

    abstract::The localization of ABH related antigens in human male reproductive tract was examined using monoclonal antibodies and an avidin biotin complex method. No positive reaction with blood group antibodies on spermatozoa was observed in testis and ductus epididymidis apart from erythrocytes and endothelial cells. The expre...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/BF02340827

    authors: Nishi K,Fukunaga T,Yamamoto Y,Yamada M,Kane M,Tanegashima A,Rand S,Brinkmann B

    更新日期:1992-01-01 00:00:00

  • Postmortem imaging findings and cause of death determination compared with autopsy: a systematic review of diagnostic test accuracy and meta-analysis.

    abstract:BACKGROUND:The aim of this study was to evaluate the sensitivity of postmortem computed tomography (PMCT), postmortem magnetic resonance imaging (PMMR) and PMCT angiography (PMCTA) compared with autopsy in cases of adult death investigations. METHODS:For this systematic review and meta-analysis, Embase, PubMed, Scopus...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章,meta分析

    doi:10.1007/s00414-019-02140-y

    authors: Ampanozi G,Halbheer D,Ebert LC,Thali MJ,Held U

    更新日期:2020-01-01 00:00:00

  • VWA STR genotyping: further inconsistencies between Perkin-Elmer and Promega kits.

    abstract::We report a simultaneous study of the VWA STR locus by the Perkin-Elmer Profiler Plus kit and the Promega GenePrint CTTv kit in a population sample from North Portugal and in 418 meiosis from family material and paternity cases. PCR amplification and genotyping were performed according to the manufacturer's instructio...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s004140100215

    authors: Alves C,Amorim A,Gusmão L,Pereira L

    更新日期:2001-10-01 00:00:00

  • Test of a new components method for age-at-death estimation from the medial end of the fourth rib using a modern Spanish sample.

    abstract::Recently, Verzeletti et al. (Am J Forensic Med Pathol 31:27-33, 2010) developed a new components method for the estimation of age-at-death from the sternal end of the fourth rib. This approach consists of the assignment of numerical scores for several age-related morphological characteristics, which are then inserted ...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-012-0735-1

    authors: Macaluso PJ Jr,Lucena J

    更新日期:2012-09-01 00:00:00

  • Secular change of sexually dimorphic cranial variables in Euro-Americans and Germans.

    abstract::Crania are a reliable source for sex estimation in Euro-Americans, Europeans, and most other populations. Besides morphological assessments, the application of Fordisc® has become a useful tool within the last two decades, creating discriminant functions from morphometric data. Unfortunately, until now, white populati...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-016-1469-2

    authors: Manthey L,Jantz RL,Bohnert M,Jellinghaus K

    更新日期:2017-07-01 00:00:00

  • Sudden infant death syndrome caused by cardiac arrhythmias: only a matter of genes encoding ion channels?

    abstract::Sudden infant death syndrome is the unexpected demise of a child younger than 1 year of age which remains unexplained after a complete autopsy investigation. Usually, it occurs during sleep, in males, and during the first 12 weeks of life. The pathophysiological mechanism underlying the death is unknown, and the letha...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章,评审

    doi:10.1007/s00414-016-1330-7

    authors: Sarquella-Brugada G,Campuzano O,Cesar S,Iglesias A,Fernandez A,Brugada J,Brugada R

    更新日期:2016-03-01 00:00:00

  • Improved analysis of long STR amplicons from degraded single source and mixed DNA.

    abstract::DNA profiles from degraded samples often suffer from information loss at the longer short tandem repeat (STR) loci. Sensitising the reactions, either by performing additional PCR cycles or increasing the capillary electrophoresis injection settings, carries the risk of over-amplifying or overloading the shorter fragme...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-012-0816-1

    authors: Westen AA,van der Gaag KJ,de Knijff P,Sijen T

    更新日期:2013-07-01 00:00:00

  • Population data and phylogenetic structure of Han population from Jiangsu province of China on GlobalFiler STR loci.

    abstract::Forensic statistical parameters based on allelic frequencies of commonly used short tandem repeats were estimated for the Han population of Jiangsu province from P.R. China. The 6-dye GlobalFiler™ PCR amplification kit incorporates 21 autosomal STRs, providing reliable DNA typing results with enhanced the power of dis...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-018-1815-7

    authors: Adnan A,Zhan X,Kasim K,Rakha A,Xin XJ

    更新日期:2018-09-01 00:00:00

  • Genetic variation at five STR loci in subpopulations living in Turkey.

    abstract::Five short tandem repeat (STR) systems HumVWA, HumTH01, HumCD4, HumF13B and HumFES were investigated in 2 subpopulations living in Turkey (Laz Turks and Kurds). The population genetic data were compared to a Turkish population sample from the Adana area. A closer genetic relationship was found to the Laz Turks than to...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s004140050059

    authors: Iwasa M,Wiegand P,Rand S,Schürenkamp M,Atasoy S,Brinkmann B

    更新日期:1997-01-01 00:00:00

  • Development of a five ChX STRs loci typing system.

    abstract::We investigated the polymorphism of five X-chromosomal short tandem repeat markers (ChrX STRs) loci (DXS7132, DXS981, DXS6803, DXS6809, and DXS6789) and their value for forensic applications. A fluorescent multiplex polymerase chain reaction (PCR) for amplifying five ChrX STRs loci in the same PCR reaction was set up....

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-008-0223-9

    authors: Liu QL,Lv DJ,Wu XL,Sun HY,Wu XY,Lu HL

    更新日期:2008-05-01 00:00:00

  • T2 and T2∗ mapping in ex situ porcine myocardium: myocardial intravariability, temporal stability and the effects of complete coronary occlusion.

    abstract::Diagnosis of ischaemia-related sudden cardiac death in the absence of microscopic and macroscopic ischaemic lesions remains a challenge for medical examiners. Medical imaging techniques increasingly provide support in post-mortem examinations by detecting and documenting internal findings prior to autopsy. Previous st...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-019-02211-0

    authors: Webb B,Manninger M,Leoni M,Widek T,Dobrovnik M,Scherr D,Stollberger R,Schwark T

    更新日期:2020-03-01 00:00:00

  • A 17-month time course study of human RNA and DNA degradation in body fluids under dry and humid environmental conditions.

    abstract::Blood, saliva, and semen are some of the forensically most relevant biological stains commonly found at crime scenes, which can often be of small size or challenging due to advanced decay. In this context, it is of great importance to possess reliable knowledge about the effects of degradation under different environm...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-016-1373-9

    authors: Sirker M,Schneider PM,Gomes I

    更新日期:2016-11-01 00:00:00

  • Fatal sepsis by Klebsiella pneumoniae in a patient with systemic lupus erythematosus: the importance of postmortem microbiological examination for the ex post diagnosis of infection.

    abstract::The utility of postmortem microbiology has continuously been a topic of controversy. The present study describes a case of fatal sepsis in a patient with systemic lupus erythematosus. Postmortem culture and genotyping analyses allowed us to identify Klebsiella pneumoniae as the cause of sepsis, revealing the inadequat...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-015-1160-z

    authors: D'Ovidio C,Pompilio A,Crocetta V,Gherardi G,Carnevale A,Di Bonaventura G

    更新日期:2015-09-01 00:00:00

  • Purification of STR-multiplex-amplified microsamples can enhance signal intensity in capillary electrophoresis.

    abstract::In this study, the effect of sample purification on total signal intensities of samples amplified with genRES MPX-2 (nine-locus multiplex) prior to capillary electrophoretic analysis has been investigated. Sample purification with the Qiaquick PCR purification kit led to an increase of the relative fluorescent signal ...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-001-0277-4

    authors: Lederer T,Braunschweiger G,Betz P,Seidl S

    更新日期:2002-06-01 00:00:00

  • Genetic polymorphisms of 32 Y-STR loci in Meizhou Hakka population.

    abstract::Using AGCU Y24 Plus PCR Amplification Kit, 32 Y short tandem repeat (STR) loci were analyzed in 355 unrelated male participants of Meizhou city in Guangdong Province of China. By analyzing 341 different haplotypes, it was found that haplotype diversity (HD) and discrimination capacity (DC) were 0.9995 and 0.9605, resp...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-018-1845-1

    authors: Du W,Wu W,Wu Z,Guo L,Wang B,Chen L

    更新日期:2019-03-01 00:00:00

  • Population genetic analysis of the Globalfiler STR loci in 3032 individuals from the Altay Han population of Xinjiang in northwest China.

    abstract::The genetic polymorphisms of 21 autosomal short tandem repeat (STR) loci included in the GlobalFiler™ PCR Amplification Kit were evaluated in 3032 unrelated individuals Altay Han of Xinjiang, northwest China. All of the loci reached the Hardy-Weinberg equilibrium. These loci were examined to determine allele frequenci...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-017-1641-3

    authors: Li X,Li L,Wang Q,Zhang J,Ge W,Bai R,Yu X,Shi M

    更新日期:2018-01-01 00:00:00

  • Discriminant analysis of mandibular measurements for the estimation of sex in a modern Brazilian sample.

    abstract::The present study aimed to evaluate the accuracy of mandibular measurements for sex determination in a Brazilian population. The sample was composed of 100 mandibles, of which 53 were female and 47 were male, and the average age was 57.03 years. The mandible measurement protocol was composed of 15 measurements, of whi...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-017-1681-8

    authors: Lopez-Capp TT,Rynn C,Wilkinson C,de Paiva LAS,Michel-Crosato E,Biazevic MGH

    更新日期:2018-05-01 00:00:00

  • On the physics of momentum in ballistics: can the human body be displaced or knocked down by a small arms projectile?

    abstract::Shooting incidents are often portrayed as resulting in a sometimes violent backwards displacement of the victim. This opinion is also not infrequently held by expert witnesses. The physical force responsible for this would be momentum (mass x velocity). The physics of momentum in ballistic injury is explained in detai...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章,评审

    doi:10.1007/BF01369676

    authors: Karger B,Kneubuehl BP

    更新日期:1996-01-01 00:00:00

  • European council of legal medicine (ECLM) guidelines for the examination of suspected elder abuse.

    abstract::Article 25 of the Charter of Fundamental Rights of the European Union (adopted in Nice on 7 December 2000) recognizes and respects the rights of older people to lead a life of dignity and independence and to participate in social and cultural life. It also highlights the importance of prevention and recognition of eld...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章,实务指引

    doi:10.1007/s00414-018-1880-y

    authors: Keller E,Santos C,Cusack D,Väli M,Ferrara D,Ludes B,Mangin P,Payne-James JJ,Vieira DN

    更新日期:2019-01-01 00:00:00

  • The application of autophagy to thrombus age estimation in murine deep vein thrombosis model.

    abstract::We immunohistochemically examined the intrathrombotic dynamics of autophagy during thrombogenesis using murine deep vein thrombosis (DVT) models. To perform the immunohistochemical analyses, we used anti-LC3 antibody and anti-p62 antibody for detecting the intrathrombotic autophagic functions. We estimated dynamics of...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-019-02168-0

    authors: Nosaka M,Ishida Y,Kuninaka Y,Taruya A,Kimura A,Shimada E,Yamamoto H,Michiue T,Furukawa F,Kondo T

    更新日期:2020-05-01 00:00:00

  • Pitfalls of toxicological investigations in hair, bones, and nails in extensively decomposed bodies: illustration with two cases.

    abstract::It is difficult to carry out toxicological investigations in biological samples collected from extensively decomposed bodies and to interpret obtained results as several pitfalls should be considered: redistribution phenomena, degradation of xenobiotics during the postmortem period, contamination by putrefaction fluid...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-020-02267-3

    authors: Wiart JF,Hakim F,Andry A,Eiden C,Drevin G,Lelièvre B,Rougé-Maillart C,Decourcelle M,Lemaire-Hurtel AS,Allorge D,Gaulier JM

    更新日期:2020-07-01 00:00:00

  • Intraindividual incongruences of medially ossifying clavicles in borderline adults as seen from thin-slice CT studies of 2595 male persons.

    abstract::In the past, numerous studies have documented the possibility of intraindividual differing appearances of the paired age-marker "medial clavicular ossification" in borderline adults. However, the extent of the divergences is rarely mentioned. Against that the article describes this phenomenon from a large sample of 25...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-017-1694-3

    authors: Rudolf E,Kramer J,Schmidt S,Vieth V,Winkler I,Schmeling A

    更新日期:2018-03-01 00:00:00

  • Forensic 3D documentation of skin injuries.

    abstract::An accurate and precise documentation of injuries is fundamental in a forensic pathological context. Photographs and manual measurements are taken of all injuries during autopsies, but ordinary photography projects a 3D wound on a 2D space. Using technologies such as photogrammetry, it is possible to create 3D detaile...

    journal_title:International journal of legal medicine

    pub_type: 杂志文章

    doi:10.1007/s00414-016-1499-9

    authors: Villa C

    更新日期:2017-05-01 00:00:00