Stable-isotope probing of DNA: insights into the function of uncultivated microorganisms from isotopically labeled metagenomes.

Abstract:

:Stable-isotope probing (SIP) of environmental genomic DNA allows populations in a natural microbial community to be identified through the incorporation of (13)C- or (15)N-labeled substrates into biomass. The isotopically labeled DNA is retrieved by density gradient centrifugation, and active microorganisms identified by molecular analysis of the DNA. Recent advances have set the stage for DNA-based SIP with higher sensitivities, shorter incubation times, and more relevant substrate concentrations than used previously. The first demonstration of a DNA-SIP-based metagenome analysis has paved the way for hypothesis-driven studies in environmental genomics.

journal_name

Curr Opin Biotechnol

authors

Friedrich MW

doi

10.1016/j.copbio.2005.12.003

subject

Has Abstract

pub_date

2006-02-01 00:00:00

pages

59-66

issue

1

eissn

0958-1669

issn

1879-0429

pii

S0958-1669(05)00197-7

journal_volume

17

pub_type

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