Abstract:
:Microbial communities associated with a plant host, constituting a holobiont, affect the physiology and growth of the plant via metabolites that are mainly derived from their photosynthates. The structure and function of active microbial communities that assimilate root exudates can be tracked by using stable isotope probing (SIP) approaches. This article reviews results from ongoing SIP research in plant-microbe interactions, with a specific focus on investigating the fate of fresh and recalcitrant carbon in the rhizosphere with 13C enriched-root exudates, in addition to identifying key players in carbon cycling. Finally, we discuss new SIP applications that have the potential to identify novel enzymes implicated in rhizoremediation or plant genes dedicated to root exudation by combining SIP approaches and genome wide associations studies.
journal_name
Curr Opin Biotechnoljournal_title
Current opinion in biotechnologyauthors
Haichar FEZ,Heulin T,Guyonnet JP,Achouak Wdoi
10.1016/j.copbio.2016.02.023subject
Has Abstractpub_date
2016-10-01 00:00:00pages
9-13eissn
0958-1669issn
1879-0429pii
S0958-1669(16)30046-5journal_volume
41pub_type
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