Denitrifying bacteria in bulk and maize-rhizospheric soil: diversity and N2O-reducing abilities.

Abstract:

:The aim of this study was to determine the effect of the rhizosphere of maize on the diversity of denitrifying bacteria. Community structure comparison was performed by constructing a collection of isolates recovered from bulk and maize planted soil. A total of 3240 nitrate-reducing isolates were obtained and 188 of these isolates were identified as denitrifiers based on their ability to reduce nitrate to N2O or N2. 16S rDNA fragments amplified from the denitrifying isolates were analysed by restriction fragment length polymorphism. Isolates were grouped according to their restriction patterns, and 16S rDNA of representatives from each group were sequenced. A plant dependent enrichment of Agrobacterium-related denitrifiers has been observed resulting in a modification of the structure of the denitrifying community between planted and bulk soil. In addition, the predominant isolates in the rhizosphere soil were not able to reduce N2O while dominant isolates in the bulk soil evolve N2 as a denitrification product.

journal_name

Can J Microbiol

authors

Chèneby D,Perrez S,Devroe C,Hallet S,Couton Y,Bizouard F,Iuretig G,Germon JC,Philippot L

doi

10.1139/w04-037

subject

Has Abstract

pub_date

2004-07-01 00:00:00

pages

469-74

issue

7

eissn

0008-4166

issn

1480-3275

pii

w04-037

journal_volume

50

pub_type

杂志文章
  • Chemical and enzymatic changes in the cell walls of Candida albicans and Saccharomyces cerevisiae by scanning electron microscopy.

    abstract::Candida albicans and Saccharomyces cerevisiae cells were examined by scanning scanning electron microscopy before and after extraction of the mannans of the cell wall. The surfaces of control cells were smooth; after mannan extraction they were rough and showed erosions which were particularly striking within the area...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/m80-164

    authors: Koch Y,Rademacher KH

    更新日期:1980-08-01 00:00:00

  • The origin of fatty acids in the hydrocarbon-utilizing microorganism Mycobacterium vaccae.

    abstract::The fatty acid pattern in Mycobacterium vaccae strain JOB5 was examined after growth on n-alkanes (C14-C18), 1-alkenes (C14-C18), 2- or 3-methyl octadecane, and 8-heptadecene. It was evident that monoterminal oxidation of n-alkanes was followed by beta-oxidation and that both parent fatty acid and products of beta-oxi...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/m75-012

    authors: King DH,Perry JJ

    更新日期:1975-01-01 00:00:00

  • Directed biosynthesis of novel derivatives of echinomycin. II. Purification and structure elucidation.

    abstract::New antibiotics produced by Streptomyces echinatus A8331 cultured in the presence of heterocyclic aromatic acids can be separated and purified by high-performance liquid chromatography using reversed phase columns. Natural quinoxaline antibiotics and certain quinoline derivatives can also be efficiently separated in n...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/m84-112

    authors: Gauvreau D,Waring MJ

    更新日期:1984-06-01 00:00:00

  • The interaction of cholera toxin subunit A with cultured adrenal cells.

    abstract::Subunits A and B of cholera enterotoxin were isolated by chromatography on a Bio-Gel P-60 column in the presence of 4% formic acid. The purity and biological activity of the isolated subunits was assessed by polyacrylamide disc gel electrophoresis and mouse adrenal cell assay, respectively. The specific uptake of isol...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/m78-153

    authors: Knoop FC

    更新日期:1978-08-01 00:00:00

  • Water activity, temperature, and pH effects on growth of Fusarium moniliforme and Fusarium proliferatum isolates from maize.

    abstract::The effects of water activity (aw, 0.994-0.90 identical to 0.4-14.0 (-)MPa water potential), temperature (4-45 degrees C), and pH (3.6, 5.5, 7.0), and their interactions on growth of isolates of Fusarium moniliforme and Fusarium proliferatum were determined in vitro on a maize extract agar medium. Growth of two isolat...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/m95-149

    authors: Marín S,Sanchis V,Magan N

    更新日期:1995-12-01 00:00:00

  • Relationship between carbon source and susceptibility of Cephalosporium acremonium to selected amino acid analogues.

    abstract::The susceptibility of Cephalosporium acremonium to selected amino acid analogues was markedly influenced by the carbon source used in the test media. Lysine hydroxamate, beta-hydroxy norvaline, and hexafluorovaline were toxic when tested with ribose, ribose or fructose, and ribose or galactose, respectively. In contra...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/m79-120

    authors: Mehta RJ,Nash CH

    更新日期:1979-07-01 00:00:00

  • Characteristics of the rhizobia associated with Dalea spp. in the Ordway, Kellogg-Weaver Dunes, and Hayden prairies.

    abstract::Habitat fragmentation affects the biodiversity and function of aboveground organisms in natural ecosystems but has not been studied for effects on belowground species. In this paper, we consider the diversity of the rhizobia associated with the indigenous legume Dalea purpurea in 3 residual prairie areas in Minnesota ...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/w04-107

    authors: Tlusty B,van Berkum P,Graham PH

    更新日期:2005-01-01 00:00:00

  • Evidence for a relationship between chloroquine and complement from studies with lymphocyte mitogens: possible implications for the mechanism of action of chloroquine in disease.

    abstract::Chloroquine increases the inhibition of cultured lymphocytes by high concentrations of phytohemagglutinin (PHA) or concanavalin A (Con A). The inhibition is also increased by complement. Thus chloroquine and complement have similar effects. Time-course studies show that chloroquine increases the rate of onset of the c...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/m75-231

    authors: Forsdyke DR

    更新日期:1975-10-01 00:00:00

  • Colony counts and characterization of bacteria adherent to the rumen wall and desquamated epithelial cells in conventional young lambs.

    abstract::Characterization and enumeration of the adherent epimural community of the rumen wall of young, conventionally reared lambs were carried out from 2 to 21 days after birth. Three hundred strains were isolated by anaerobic procedures from three sites: dorsal, ventral, and caudal sacs, and from the sloughed epithelial ce...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/m89-114

    authors: Rieu F,Fonty G,Gouet P

    更新日期:1989-07-01 00:00:00

  • Methanogens and sulfate-reducing bacteria in oil sands fine tailings waste.

    abstract::In the past decade, the large tailings pond (Mildred Lake Settling Basin) on the Syncrude Canada Ltd. lease near Fort McMurray, Alta., has gone methanogenic. Currently, about 60%-80% of the flux of gas across the surface of the tailings pond is methane. As well as adding to greenhouse gas emissions, the production of ...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:

    authors: Holowenko FM,MacKinnon MD,Fedorak PM

    更新日期:2000-10-01 00:00:00

  • Characterization of 4 T1-like lytic bacteriophages that lyse Shiga-toxin Escherichia coli O157:H7.

    abstract::Bacteriophages are associated with reduced fecal shedding of Shiga-toxin-producing Escherichia coli O157:H7 (STEC O157:H7) in cattle. Four phages exhibiting activity against 12 of 14 STEC O157:H7 strains, representing 11 common phage types, were isolated. Phages did not lyse non-O157 E. coli, with 11 of the 12 STEC st...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/w2012-063

    authors: Niu YD,Stanford K,Ackermann HW,McAllister TA

    更新日期:2012-07-01 00:00:00

  • Changes in membrane lipids and amino acid transport in a nystatin-resistant Aspergillus niger.

    abstract::A nystatin-resistant mutant of Aspergillus niger is described that has quantitative changes in phospholipid composition compared with the wild type. The proportion of linoleic acid in total phospholipids was elevated in the mutant from 38 to 56% and the proportion of oleic acid was lowered from 28 to 12%. Amino acid t...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/m90-076

    authors: Mazumder C,Basu J,Kundu M,Chakrabarti P

    更新日期:1990-06-01 00:00:00

  • Multidrug- and metal-resistant strains of Klebsiella pneumoniae isolated from Penaeus monodon of the coastal waters of deltaic Sundarban.

    abstract::Marine shrimp of the species Penaeus monodon were collected from the coastal region (Haroa) of the deltaic Sundarbans of West Bengal, India during the premonsoon period in 1996. Klebsiella pneumoniae was isolated from the alimentary canal and gills of the shrimp as the sole isolate. All 10 isolated strains were resist...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:

    authors: Choudhury P,Kumar R

    更新日期:1998-02-01 00:00:00

  • Acetylation and nitrosation of ciprofloxacin by environmental strains of mycobacteria.

    abstract::To determine the ability of environmental bacteria to metabolize the frequently prescribed fluoroquinolone drug ciprofloxacin, eight Mycobacterium spp. cultures were grown for 4 days in a medium containing sorbitol and yeast extract with 100 mg x L(-1) ciprofloxacin. After the cultures had been centrifuged and the sup...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/w06-101

    authors: Adjei MD,Heinze TM,Deck J,Freeman JP,Williams AJ,Sutherland JB

    更新日期:2007-01-01 00:00:00

  • Microbial surfactant activities from a petrochemical landfarm in a humid tropical region of Brazil.

    abstract::The goal of this study was to assess the presence and surfactant potential of naturally occurring microbes from a tropical soil with petrochemical contamination. Microorganisms in a soil sample from a Brazilian landfarm were isolated and grown on petroleum as the sole carbon source. Of 60 isolates screened for petrole...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/W07-052

    authors: Maciel BM,Dias JC,Dos Santos AC,Filho RC,Fontana R,Loguercio LL,Rezende RP

    更新日期:2007-08-01 00:00:00

  • Characterization of the mitogenic activity elicited by Neisseria gonorrhoeae ribosomal fractions.

    abstract::Ribosomal preparations from Neisseria gonorrhoeae types 1 and 4 were examined for their in vitro stimulation of mouse splenocytes to determine the ribosomal moiety or contaminant responsible for the immunoproliferative activity. In immunodiffusion tests with homologous rabbit antiserum, crude 70S ribosomes formed four...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/m78-094

    authors: Brodeur BR

    更新日期:1978-05-01 00:00:00

  • Overexpression of the dctA gene in Rhizobium meliloti: effect on transport of C4 dicarboxylates and symbiotic nitrogen fixation.

    abstract::Symbiotic nitrogen fixation may be limited by the transport of C4 dicarboxylates into bacteroids in the nodule for use as a carbon and energy source. In an attempt to increase dicarboxylate transport, a plasmid was constructed in which the Rhizobium meliloti structural transport gene dctA was fused to a tryptophan ope...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/m92-091

    authors: Rastogi V,Labes M,Finan T,Watson R

    更新日期:1992-06-01 00:00:00

  • Purification and characterization of tuberculin-active components from BCG.

    abstract::The tuberculin activity of protoplasmic extracts isolated from living BCG was purified successively by gel filtration on Sephadex G-100 and G-75, and by electrophoresis on 7.5% and on gradient (6-18%) polyacrylamide gels. The tuberculin-active fractions, as determined in BCG-sensitized guinea pigs, were used as the st...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/m75-290

    authors: Laguerre M,Turcotte R

    更新日期:1975-12-01 00:00:00

  • Antigenic analysis of Pasteurella multocida (serotype 1) by crossed immunoelectrophoresis: characterization of cytoplasmic and cell envelope associated antigens.

    abstract::The application of crossed immunoelectrophoresis to the analysis of a reference cytoplasm and cell envelope preparation from Pasteurella multocida serotype 1 revealed antigenic complexity not previously found. At least 55 cytoplasmic and 19 cell envelope antigens were clearly distinguished. Variation of anticytoplasm ...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/m80-118

    authors: Bhasin JL,Lapointe-Shaw L

    更新日期:1980-06-01 00:00:00

  • Analysis of pFQ12, a 22.4-kb Frankia plasmid.

    abstract::Frankia are gram-positive, filamentous bacteria capable of fixing atmospheric dinitrogen in symbiosis with a wide variety of woody plants and shrubs. Some isolates of Frankia harbor plasmids of 8.5 (pFQ11) and 22.4 kb (pFQ12) that have no known function but are transmitted through many generations in culture. We have ...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/w01-050

    authors: John TR,Rice JM,Johnson JD

    更新日期:2001-07-01 00:00:00

  • Sulphur acquisition by Neisseria meningitidis.

    abstract::Group B Neisseria meningitidis (SD1C) was grown on defined medium supplemented with each of a variety of sulphur compounds as the sole source of sulphur. The organism grew on sulphate, sulphite, bisulphite, thiosulphate, dithionite, hydrosulphide, thiocyanate, L-cysteine, L-cystine, reduced glutathione, methionine, me...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/m84-232

    authors: Port JL,DeVoe IW,Archibald FS

    更新日期:1984-12-01 00:00:00

  • Induction of microbial variants of Pseudomonas pseudomallei in cultured rabbit alveolar macrophages.

    abstract::Cultured alveolar and peritoneal macrophages obtained from normal and immunized rabbits were used to induce wall-defective microbial variants of Pseudomonas pseudomallei. Variants were iduced only by normal alveolar macrophages. The variants reverted to typical Pseudomonas forms either spontaneously or upon transfer i...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/m75-303

    authors: Kishimoto RA,Eveland WC

    更新日期:1975-12-01 00:00:00

  • Site specificity of metallic ion binding in Escherichia coli K-12 lipopolysaccharide.

    abstract::The site specificity of metallic ion binding in Escherichia coli K-12 lipopolysaccharide was assessed by collecting high-resolution phosphorus nuclear magnetic resonance spectra in the presence of manganese, a paramagnetic divalent cation. This technique revealed high-affinity interactions between the cation and all o...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/m86-010

    authors: Ferris FG,Beveridge TJ

    更新日期:1986-01-01 00:00:00

  • Survival of lactococci during passage through mouse digestive tract.

    abstract::One of the important properties of probiotics is the ability to survive in the intestine. There have been few studies on the probiotic property of lactococci, since they are formally not considered to be natural inhabitants of the intestine. To evaluate lactococci as probiotic bacteria, we investigated their ability t...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/w03-092

    authors: Kimoto H,Nomura M,Kobayashi M,Mizumachi K,Okamoto T

    更新日期:2003-11-01 00:00:00

  • Effect of subinhibitory concentrations of antimicrobial agents (quinolones and macrolide) on the production of verotoxin by enterohemorrhagic Escherichia coli O157:H7.

    abstract::In Japan, antimicrobial agent therapy for patients with diarrhea due to enterovirulent organisms including enterohemorrhagic Escherichia coli (EHEC) is common, and norfloxacin (NFLX), fosfomycin, and kanamycin are recommended for EHEC treatment by the Japanese Ministry of Health and Welfare. The aim of this study was ...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:

    authors: Yoh M,Frimpong EK,Voravuthikunchai SP,Honda T

    更新日期:1999-09-01 00:00:00

  • Minute tubular forms in soil.

    abstract::Large numbers of minute, flat, long, straight, but often broken structures were observed in aqueous extracts of soil. We have applied the purely descriptive term 'tubules' to these structure, because they apparently became flattened during preparation for electron-microscopic viewing. The tubules appeared to be compos...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/m79-105

    authors: Casida LE Jr,Liu KC

    更新日期:1979-06-01 00:00:00

  • Nutrition and phylogeny of predacious yeasts.

    abstract::Yeast predation was studied with respect to the range of its distribution among ascomycetous yeasts, the range of yeast species that can be affected, and nutritional aspects of the phenomenon. The yeasts identified as predators belong to the Saccharomycopsis clade as defined on the basis of rDNA sequence relatedness. ...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/w00-021

    authors: Lachance MA,Pupovac-Velikonja A,Natarajan S,Schlag-Edler B

    更新日期:2000-06-01 00:00:00

  • Effect of freezing and thawing on survival of three bacterial isolates from an arctic soil.

    abstract::Three isolates, a Pseudomonas sp., Bacillus sp., and Arthrobacter sp., which had been isolated from a meadow soil at Devon Island, Canada, were subjected to freezing and thawing at low rates under various conditions. When cells were frozen in sand or soil, survival was dependent on moisture level, storage time, and th...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/m78-236

    authors: Nelson LM,Parkinson D

    更新日期:1978-12-01 00:00:00

  • Cytochrome aa3 in facultatively aerobic and hyperthermophilic archaeon Pyrobaculum oguniense.

    abstract::We partially purified and characterized the cytochrome aa3 from the facultatively aerobic and hyperthermophilic archaeon Pyrobaculum oguniense. This cytochrome aa3 showed oxygen consumption activity with N, N, N', N'-tetramethyl-1,4-phenylenediamine and ascorbate as substrates, and also displayed bovine cytochrome c o...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/w05-040

    authors: Nunoura T,Sako Y,Wakagi T,Uchida A

    更新日期:2005-08-01 00:00:00

  • Antigenic analysis of Giardia duodenalis strains isolated in Alberta.

    abstract::Giardia duodenalis is a common intestinal parasite in most parts of the world. In Canada it is associated with both endemic and epidemic infections that are often transmitted by the waterborne route. Although G. duodenalis strains have been isolated from several animals, the role of other mammals in human infection is...

    journal_title:Canadian journal of microbiology

    pub_type: 杂志文章

    doi:10.1139/m86-171

    authors: Wenman WM,Meuser RU,Wallis PM

    更新日期:1986-12-01 00:00:00