Identification of in vivo mRNA targets of GLD-1, a maxi-KH motif containing protein required for C. elegans germ cell development.

Abstract:

:Caenorhabditis elegans GLD-1, a KH motif containing RNA-binding protein of the GSG/STAR subfamily, controls diverse aspects of germ line development, suggesting that it may have multiple mRNA targets. We used an immunoprecipitation/subtractive hybridization/cloning strategy to identify 15 mRNAs that are putative targets of GLD-1 binding and regulation. For one target, the rme-2 yolk receptor mRNA, GLD-1 acts as a translational repressor to spatially restrict RME-2 accumulation, and thus yolk uptake, to late-stage oocytes. We found that GLD-1 binds sequences in both 5' coding and the 3' untranslated region of rme-2 mRNA. Initial characterization of the other 14 targets shows that (1) they are coexpressed with GLD-1; (2) they can have mutant/RNA-mediated interference depletion phenotypes indicating functions in germ line development or as maternal products necessary for early embryogenesis; and (3) GLD-1 may coregulate mRNAs corresponding to functionally redundant subsets of genes within two gene families. Thus, a diverse set of genes have come under GLD-1-mediated regulation to achieve normal germ line development. Previous work identified tra-2 as a GLD-1 target for germ line sex determination. Comparisons of GLD-1-mediated translational control of rme-2 and tra-2 suggests that the mechanisms may differ for distinct target mRNA species.

journal_name

Genes Dev

journal_title

Genes & development

authors

Lee MH,Schedl T

doi

10.1101/gad.915901

subject

Has Abstract

pub_date

2001-09-15 00:00:00

pages

2408-20

issue

18

eissn

0890-9369

issn

1549-5477

journal_volume

15

pub_type

杂志文章
  • Swi/Snf dynamics on stress-responsive genes is governed by competitive bromodomain interactions.

    abstract::The Swi/Snf chromatin remodeling complex functions to alter nucleosome positions by either sliding nucleosomes on DNA or the eviction of histones. The presence of histone acetylation and activator-dependent recruitment and retention of Swi/Snf is important for its efficient function. It is not understood, however, why...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.243584.114

    authors: Dutta A,Gogol M,Kim JH,Smolle M,Venkatesh S,Gilmore J,Florens L,Washburn MP,Workman JL

    更新日期:2014-10-15 00:00:00

  • Against the oxidative damage theory of aging: superoxide dismutases protect against oxidative stress but have little or no effect on life span in Caenorhabditis elegans.

    abstract::The superoxide radical (O(2)(-)) has long been considered a major cause of aging. O(2)(-) in cytosolic, extracellular, and mitochondrial pools is detoxified by dedicated superoxide dismutase (SOD) isoforms. We tested the impact of each SOD isoform in Caenorhabditis elegans by manipulating its five sod genes and saw no...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.504808

    authors: Doonan R,McElwee JJ,Matthijssens F,Walker GA,Houthoofd K,Back P,Matscheski A,Vanfleteren JR,Gems D

    更新日期:2008-12-01 00:00:00

  • Aurora-A acts as a tumor suppressor and regulates self-renewal of Drosophila neuroblasts.

    abstract::The choice of self-renewal versus differentiation is a fundamental issue in stem cell and cancer biology. Neural progenitors of the Drosophila post-embryonic brain, larval neuroblasts (NBs), divide asymmetrically in a stem cell-like fashion to generate a self-renewing NB and a Ganglion Mother Cell (GMC), which divides...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1487506

    authors: Wang H,Somers GW,Bashirullah A,Heberlein U,Yu F,Chia W

    更新日期:2006-12-15 00:00:00

  • Topoisomerases and yeast rRNA transcription: negative supercoiling stimulates initiation and topoisomerase activity is required for elongation.

    abstract::Previous work has shown that rRNA synthesis is strongly inhibited in yeast top1-top2 double mutants. Here, we show that inactivation of yeast topoisomerases can have paradoxical effects on transcription by RNA polymerase I. For example, transcription of ribosomal minigenes on extrachromosomal plasmids is greatly stimu...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.6.7.1332

    authors: Schultz MC,Brill SJ,Ju Q,Sternglanz R,Reeder RH

    更新日期:1992-07-01 00:00:00

  • Molecular genetics of aristaless, a prd-type homeo box gene involved in the morphogenesis of proximal and distal pattern elements in a subset of appendages in Drosophila.

    abstract::Viable aristaless (al) mutations of Drosophila affect pattern elements at both ends of the proximodistal axis in a subset of adult appendages. The al gene has been cloned and identified by P-element-mediated germ-line transformation with a genomic DNA fragment, which rescues a lethal mutation of al as well as aspects ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.7.1.114

    authors: Schneitz K,Spielmann P,Noll M

    更新日期:1993-01-01 00:00:00

  • Spatial arrangement of an RNA zipcode identifies mRNAs under post-transcriptional control.

    abstract::How RNA-binding proteins recognize specific sets of target mRNAs remains poorly understood because current approaches depend primarily on sequence information. In this study, we demonstrate that specific recognition of messenger RNAs (mRNAs) by RNA-binding proteins requires the correct spatial positioning of these seq...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.177428.111

    authors: Patel VL,Mitra S,Harris R,Buxbaum AR,Lionnet T,Brenowitz M,Girvin M,Levy M,Almo SC,Singer RH,Chao JA

    更新日期:2012-01-01 00:00:00

  • The Nf2 tumor suppressor gene product is essential for extraembryonic development immediately prior to gastrulation.

    abstract::The neurofibromatosis type II (NF2) tumor suppressor encodes a putative cytoskeletal associated protein, the loss of which leads to the development of Schwann cell tumors associated with NF2 in humans. The NF2 protein merlin belongs to the band 4.1 family of proteins that link membrane proteins to the cytoskeleton and...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.11.10.1253

    authors: McClatchey AI,Saotome I,Ramesh V,Gusella JF,Jacks T

    更新日期:1997-05-15 00:00:00

  • Inactivation of AtRac1 by abscisic acid is essential for stomatal closure.

    abstract::Plant water homeostasis is maintained by the phytohormone abscisic acid (ABA), which triggers stomatal pore closure in response to drought stress. We identified the Arabidopsis small guanosine triphosphatase (GTPase) protein AtRac1 as a central component in the ABA-mediated stomatal closure process. ABA treatment indu...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.900401

    authors: Lemichez E,Wu Y,Sanchez JP,Mettouchi A,Mathur J,Chua NH

    更新日期:2001-07-15 00:00:00

  • Reelin-induced tyrosine [corrected] phosphorylation of disabled 1 during neuronal positioning.

    abstract::The reelin (reln) and disabled 1 (dab1) genes both ensure correct neuronal positioning during brain development. We have found that the intracellular Dab1 protein receives a tyrosine phosphorylation signal from extracellular Reln protein. Genetic analysis shows that reln function depends on dab1, and vice versa, as ex...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.13.6.643

    authors: Howell BW,Herrick TM,Cooper JA

    更新日期:1999-03-15 00:00:00

  • Voltage-gated potassium channel EAG2 controls mitotic entry and tumor growth in medulloblastoma via regulating cell volume dynamics.

    abstract::Medulloblastoma (MB) is the most common pediatric CNS malignancy. We identify EAG2 as an overexpressed potassium channel in MBs across different molecular and histological subgroups. EAG2 knockdown not only impairs MB cell growth in vitro, but also reduces tumor burden in vivo and enhances survival in xenograft studie...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.193789.112

    authors: Huang X,Dubuc AM,Hashizume R,Berg J,He Y,Wang J,Chiang C,Cooper MK,Northcott PA,Taylor MD,Barnes MJ,Tihan T,Chen J,Hackett CS,Weiss WA,James CD,Rowitch DH,Shuman MA,Jan YN,Jan LY

    更新日期:2012-08-15 00:00:00

  • eIF2 independently binds two distinct eIF2B subcomplexes that catalyze and regulate guanine-nucleotide exchange.

    abstract::eIF2B is a heteropentameric guanine-nucleotide exchange factor essential for protein synthesis initiation in eukaryotes. Its activity is inhibited in response to starvation or stress by phosphorylation of the alpha subunit of its substrate, translation initiation factor eIF2, resulting in reduced rates of translation ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.12.4.514

    authors: Pavitt GD,Ramaiah KV,Kimball SR,Hinnebusch AG

    更新日期:1998-02-15 00:00:00

  • BRCA1/BARD1 inhibition of mRNA 3' processing involves targeted degradation of RNA polymerase II.

    abstract::Mammalian cells exhibit a complex response to DNA damage. The tumor suppressor BRCA1 and associated protein BARD1 are thought to play an important role in this response, and our previous work demonstrated that this includes transient inhibition of the pre-mRNA 3' processing machinery. Here we provide evidence that thi...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1309505

    authors: Kleiman FE,Wu-Baer F,Fonseca D,Kaneko S,Baer R,Manley JL

    更新日期:2005-05-15 00:00:00

  • Termination-altering amino acid substitutions in the beta' subunit of Escherichia coli RNA polymerase identify regions involved in RNA chain elongation.

    abstract::To identify regions of the largest subunit of RNA polymerase that are potentially involved in transcript elongation and termination, we have characterized amino acid substitutions in the beta' subunit of Escherichia coli RNA polymerase that alter expression of reporter genes preceded by terminators in vivo. Terminatio...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.8.23.2913

    authors: Weilbaecher R,Hebron C,Feng G,Landick R

    更新日期:1994-12-01 00:00:00

  • Mesp2: a novel mouse gene expressed in the presegmented mesoderm and essential for segmentation initiation.

    abstract::We isolated a novel bHLH protein gene Mesp2 (for mesoderm posterior 2) that cross-hybridizes with Mesp1 expressed in the early mouse mesoderm. Mesp2 is expressed in the rostral presomitic mesoderm, but down-regulated immediately after the formation of the segmented somites. To determine the function of MesP2 protein (...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.11.14.1827

    authors: Saga Y,Hata N,Koseki H,Taketo MM

    更新日期:1997-07-15 00:00:00

  • The Med proteins of yeast and their function through the RNA polymerase II carboxy-terminal domain.

    abstract::Mediator was resolved from yeast as a multiprotein complex on the basis of its requirement for transcriptional activation in a fully defined system. Three groups of mediator polypeptides could be distinguished: the products of five SRB genes, identified as suppressors of carboxy-terminal domain (CTD)-truncation mutant...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.12.1.45

    authors: Myers LC,Gustafsson CM,Bushnell DA,Lui M,Erdjument-Bromage H,Tempst P,Kornberg RD

    更新日期:1998-01-01 00:00:00

  • Structure and mechanism of the RNA polymerase II transcription machinery.

    abstract::RNA polymerase II (Pol II) transcribes all protein-coding genes and many noncoding RNAs in eukaryotic genomes. Although Pol II is a complex, 12-subunit enzyme, it lacks the ability to initiate transcription and cannot consistently transcribe through long DNA sequences. To execute these essential functions, an array of...

    journal_title:Genes & development

    pub_type: 杂志文章,评审

    doi:10.1101/gad.335679.119

    authors: Schier AC,Taatjes DJ

    更新日期:2020-04-01 00:00:00

  • Loss of function of def selectively up-regulates Delta113p53 expression to arrest expansion growth of digestive organs in zebrafish.

    abstract::Transcription factor p53 forms a network with associated factors to regulate the cell cycle and apoptosis in response to environmental stresses. However, there is currently no direct genetic evidence to show if or how the p53 pathway functions during organogenesis. Here we present evidence to show that the zebrafish d...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1366405

    authors: Chen J,Ruan H,Ng SM,Gao C,Soo HM,Wu W,Zhang Z,Wen Z,Lane DP,Peng J

    更新日期:2005-12-01 00:00:00

  • Phage N4 RNA polymerase II recruitment to DNA by a single-stranded DNA-binding protein.

    abstract::Transcription of bacteriophage N4 middle genes is carried out by a phage-coded, heterodimeric RNA polymerase (N4 RNAPII), which belongs to the family of T7-like RNA polymerases. In contrast to phage T7-RNAP, N4 RNAPII displays no activity on double-stranded templates and low activity on single-stranded templates. In v...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1121403

    authors: Carter RH,Demidenko AA,Hattingh-Willis S,Rothman-Denes LB

    更新日期:2003-09-15 00:00:00

  • A two-base change in a POU factor-binding site switches pituitary-specific to lymphoid-specific gene expression.

    abstract::The structurally related POU homeo domain proteins Pit-1 and Oct-2 activate pituitary- and lymphoid-specific transcription, respectively, by binding to similar AT-rich motifs in their target genes. In this study we identify bases critical for recognition and activation by Pit-1 and examine how small differences in Pit...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.4.1.43

    authors: Elsholtz HP,Albert VR,Treacy MN,Rosenfeld MG

    更新日期:1990-01-01 00:00:00

  • Expression of a dominant-negative Wnt blocks induction of MyoD in Xenopus embryos.

    abstract::During gastrulation of Xenopus embryos the prospective mesoderm is induced initially with domains of dorsal and ventral fate, then further patterned to generate somitic mesoderm by signals from the gastrula organizer. Although Xwnt-8 is expressed in future ventrolateral mesoderm and induces prospective epidermis to di...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.10.21.2805

    authors: Hoppler S,Brown JD,Moon RT

    更新日期:1996-11-01 00:00:00

  • Tel2 mediates activation and localization of ATM/Tel1 kinase to a double-strand break.

    abstract::The kinases ATM and ATR (Tel1 and Mec1 in the yeast Saccharomyces cerevisiae) control the response to DNA damage. We report that S. cerevisiae Tel2 acts at an early step of the TEL1/ATM pathway of DNA damage signaling. We show that Tel1 and Tel2 interact, and that even when Tel1 protein levels are high, this interacti...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1646208

    authors: Anderson CM,Korkin D,Smith DL,Makovets S,Seidel JJ,Sali A,Blackburn EH

    更新日期:2008-04-01 00:00:00

  • The mouse homolog of Drosophila Vasa is required for the development of male germ cells.

    abstract::Restricted expression of a mouse Vasa homolog gene (Mvh) expression is first detected in primordial germ cells (PGCs) after colonization of the genital ridges. Subsequently, Mvh is maintained until postmeiotic germ cells are formed. Here, we demonstrate that male mice homozygous for a targeted mutation of Mvh exhibit ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:

    authors: Tanaka SS,Toyooka Y,Akasu R,Katoh-Fukui Y,Nakahara Y,Suzuki R,Yokoyama M,Noce T

    更新日期:2000-04-01 00:00:00

  • Homozygosity for prion protein alleles encoding glutamine-171 renders sheep susceptible to natural scrapie.

    abstract::Natural scrapie has been viewed both as a recessive trait and as a contagious disease modulated by a host locus. To address this conundrum, we determined the structure of the sheep prion protein (PrP) gene, which contains three exons and extends over 20 kb of DNA. In the United States 86.4% of scrapie cases occur in S...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.8.8.959

    authors: Westaway D,Zuliani V,Cooper CM,Da Costa M,Neuman S,Jenny AL,Detwiler L,Prusiner SB

    更新日期:1994-04-15 00:00:00

  • Dorsal and neural expression of a tyrosine kinase-related Drosophila gene during embryonic development.

    abstract::Sequence analysis of an embryonic transcript of Drosophila predicts a tyrosine protein kinase-related gene. The prediction is based on several protein domains that are homologous to the functional domains of kinase-related oncogenes and several serine, threonine, and tyrosine protein kinases. For this reason, we named...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1.8.862

    authors: Haller J,Côté S,Brönner G,Jäckle H

    更新日期:1987-10-01 00:00:00

  • RNAi is activated during Drosophila oocyte maturation in a manner dependent on aubergine and spindle-E.

    abstract::Gene silencing by double-stranded RNA is a widespread phenomenon called RNAi, involving homology-dependent degradation of mRNAs. Here we show that RNAi is established in the Drosophila female germ line. mRNA transcripts are translationally quiescent at the arrested oocyte stage and are insensitive to RNAi. Upon oocyte...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.990802

    authors: Kennerdell JR,Yamaguchi S,Carthew RW

    更新日期:2002-08-01 00:00:00

  • Cyclin-B homologs in Saccharomyces cerevisiae function in S phase and in G2.

    abstract::We have cloned four cyclin-B homologs from Saccharomyces cerevisiae, CLB1-CLB4, using the polymerase chain reaction and low stringency hybridization approaches. These genes form two classes based on sequence relatedness: CLB1 and CLB2 show highest homology to the Schizosaccharomyces pombe cyclin-B homolog cdc13 involv...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.6.11.2021

    authors: Richardson H,Lew DJ,Henze M,Sugimoto K,Reed SI

    更新日期:1992-11-01 00:00:00

  • biniou (FoxF), a central component in a regulatory network controlling visceral mesoderm development and midgut morphogenesis in Drosophila.

    abstract::The subdivision of the lateral mesoderm into a visceral (splanchnic) and a somatic layer is a crucial event during early mesoderm development in both arthropod and vertebrate embryos. In Drosophila, this subdivision leads to the differential development of gut musculature versus body wall musculature. Here we report t...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.917101

    authors: Zaffran S,Küchler A,Lee HH,Frasch M

    更新日期:2001-11-01 00:00:00

  • Increased Rrm2 gene dosage reduces fragile site breakage and prolongs survival of ATR mutant mice.

    abstract::In Saccharomyces cerevisiae, absence of the checkpoint kinase Mec1 (ATR) is viable upon mutations that increase the activity of the ribonucleotide reductase (RNR) complex. Whether this pathway is conserved in mammals remains unknown. Here we show that cells from mice carrying extra alleles of the RNR regulatory subuni...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.256958.114

    authors: Lopez-Contreras AJ,Specks J,Barlow JH,Ambrogio C,Desler C,Vikingsson S,Rodrigo-Perez S,Green H,Rasmussen LJ,Murga M,Nussenzweig A,Fernandez-Capetillo O

    更新日期:2015-04-01 00:00:00

  • Glucose regulates protein interactions within the yeast SNF1 protein kinase complex.

    abstract::The SNF1 protein kinase is broadly conserved in eukaryotes and has been implicated in responses to environmental and nutritional stress. In yeast, the SNF1 kinase has a central role in the response to glucose starvation. SNF1 is associated with its activating subunit, SNF4, and other proteins in complexes. Using the t...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.10.24.3105

    authors: Jiang R,Carlson M

    更新日期:1996-12-15 00:00:00

  • Control of C. elegans hermaphrodite gonad size and shape by vab-3/Pax6-mediated regulation of integrin receptors.

    abstract::Integrin receptors for extracellular matrix are critical for cell motility, but the signals that determine when to stop are not known. Analysis of distal tip cell (DTC) migration during gonadogenesis in Caenorhabditis elegans has revealed the importance of transcription factor vab-3/Pax6 in regulating the alpha integr...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1534807

    authors: Meighan CM,Schwarzbauer JE

    更新日期:2007-07-01 00:00:00