Genetic organisation of the lipopolysaccharide O-antigen biosynthesis region of brucella melitensis 16M (wbk).

Abstract:

:Brucella spp. are Gram-negative, facultative intracellular bacteria that cause a zoonotic world-wide disease. As in other Gram-negative bacteria, its S-LPS (smooth lipopolysaccharide) is a major determinant of virulence. The Brucella melitensis 16M LPS O-antigen is a homopolymer of 4-formamido-4,6, dideoxymannose. In this study, the previously cloned 14-kb wbk gene cluster was sequenced, and seven open reading frames (ORFs) as well as four insertion sequences were identified. Six of the seven ORFs are homologous to LPS biosynthesis genes from other organisms. The gmd, per and wbkC gene products are predicted to be involved in 4-formamido-4,6,dideoxymannose synthesis. By deletion experiments, we demonstrated that the putative formyltransferase WbkC is absolutely required for the O-side-chain production. The wbkA gene product is similar to several mannosyltransferases and is probably involved in the polymerisation of the B. melitensis O-side-chain. We also identified two genes (wzm and wzt) encoding proteins with high similarity to several two-component ABC (ATP-binding cassette) transporters. Their implication in O-antigen translocation across the inner membrane was confirmed by gene replacement. Finally, no function has been assigned to the wbkB gene either by homology search or functionally, because deletion of wbkB did not interfere with the O-antigen structure. The seven ORFs have a low G + C content, indicating that they might have been acquired by lateral transfer from a progenitor with more A + T rich DNA.

journal_name

Res Microbiol

journal_title

Research in microbiology

authors

Godfroid F,Cloeckaert A,Taminiau B,Danese I,Tibor A,de Bolle X,Mertens P,Letesson JJ

doi

10.1016/s0923-2508(00)90130-x

subject

Has Abstract

pub_date

2000-10-01 00:00:00

pages

655-68

issue

8

eissn

0923-2508

issn

1769-7123

pii

S0923-2508(00)90130-X

journal_volume

151

pub_type

杂志文章
  • Second-order selection in bacterial evolution: selection acting on mutation and recombination rates in the course of adaptation.

    abstract::The increase in genetic variability of a population can be selected during adaptation, as demonstrated by the selection of mutator alleles. The dynamics of this phenomenon, named second-order selection, can result in an improved adaptability of bacteria through regulation of all facets of mutation and recombination pr...

    journal_title:Research in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s0923-2508(00)01163-3

    authors: Tenaillon O,Taddei F,Radmian M,Matic I

    更新日期:2001-01-01 00:00:00

  • Influence of FkpA variants on survival and replication of Cronobacter spp. in human macrophages.

    abstract::Members of the genus Cronobacter are responsible for cases of meningitis and bacteremia with high fatality rates in neonates. Macrophage uptake of invading microbes is an innate process, and it has been proposed that macrophage infectivity potentiator (Mip) like proteins enhance the ability of pathogens to survive wit...

    journal_title:Research in microbiology

    pub_type: 杂志文章

    doi:10.1016/j.resmic.2015.02.005

    authors: Eshwar AK,Tasara T,Stephan R,Lehner A

    更新日期:2015-04-01 00:00:00

  • Exopolysaccharides produced by the recently described halophilic bacteria Halomonas ventosae and Halomonas anticariensis.

    abstract::We studied exopolysaccharides (EPSs) produced by Halomonas ventosae and Halomonas anticariensis, two novel species of halophilic bacteria. Under optimum environmental and nutritional conditions, H. ventosae strains Al12(T) and Al16 excreted 28.35 mg and 28.95 mg of EPS per 100 ml of culture medium (34.55 and 38.6 mg o...

    journal_title:Research in microbiology

    pub_type: 杂志文章

    doi:10.1016/j.resmic.2006.06.004

    authors: Mata JA,Béjar V,Llamas I,Arias S,Bressollier P,Tallon R,Urdaci MC,Quesada E

    更新日期:2006-11-01 00:00:00

  • Antibiotic resistance with particular reference to soil microorganisms.

    abstract::Evidence of increasing resistance to antibiotics in soil and other natural isolates highlights the importance of horizontal transfer of resistance genes in facilitating gene flux in bacteria. Horizontal gene transfer in bacteria is favored by the presence of mobile genetic elements and by the organization of bacterial...

    journal_title:Research in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s0923-2508(01)01215-3

    authors: Nwosu VC

    更新日期:2001-06-01 00:00:00

  • Megraft: a software package to graft ribosomal small subunit (16S/18S) fragments onto full-length sequences for accurate species richness and sequencing depth analysis in pyrosequencing-length metagenomes and similar environmental datasets.

    abstract::Metagenomic libraries represent subsamples of the total DNA found at a study site and offer unprecedented opportunities to study ecological and functional aspects of microbial communities. To examine the depth of a community sequencing effort, rarefaction analysis of the ribosomal small subunit (SSU/16S/18S) gene in t...

    journal_title:Research in microbiology

    pub_type: 杂志文章

    doi:10.1016/j.resmic.2012.07.001

    authors: Bengtsson J,Hartmann M,Unterseher M,Vaishampayan P,Abarenkov K,Durso L,Bik EM,Garey JR,Eriksson KM,Nilsson RH

    更新日期:2012-07-01 00:00:00

  • Mycotoxin-producing and other fungi isolated from grapes for wine production, with particular emphasis on ochratoxin A.

    abstract::Mycotoxins are toxic secondary metabolites produced by filamentous fungi that have been detected in food commodities, including grapes and wine. A survey was conducted to assess mycotoxin-producing fungi in grapes destined for wine production. The mycotoxigenic capacity of the isolates was tested in culture media. Gra...

    journal_title:Research in microbiology

    pub_type: 杂志文章

    doi:10.1016/j.resmic.2004.12.005

    authors: Serra R,Braga A,Venâncio A

    更新日期:2005-05-01 00:00:00

  • Changes through time: integrating microorganisms into the study of succession.

    abstract::Ecologists have documented the process of plant succession for centuries, yet the successional patterns exhibited by microbial communities have received relatively little attention. We examine recent work on microbial succession and show how, despite some key differences, studies of plant succession can serve as a tem...

    journal_title:Research in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.resmic.2010.06.002

    authors: Fierer N,Nemergut D,Knight R,Craine JM

    更新日期:2010-10-01 00:00:00

  • Mesophilic Aeromonas strains from different serogroups: the influence of growth temperature and osmolarity on lipopolysaccharide and virulence.

    abstract::Growth of mesophilic Aeromonas sp. strains from serogroups O:13, O:33 and O:44 at different temperatures and osmolarity resulted in changes in the lipopolysaccharide (LPS) and virulence of the strains tested, as we had previously reported for strains from serogroup O:34. The effect of osmolarity could be observed when...

    journal_title:Research in microbiology

    pub_type: 杂志文章

    doi:10.1016/s0923-2508(98)80323-9

    authors: Merino S,Aguilar A,Rubires X,Tomás JM

    更新日期:1998-06-01 00:00:00

  • Oligonucleotide probe for the visualization of Escherichia coli/Escherichia fergusonii cells by in situ hybridization: specificity and potential applications.

    abstract::There are several occasions when enumeration of Escherichia coli cells is needed. These include examination of urine specimens and water or food samples. Present methods rely on growth in more or less selective media (colony-forming units on agar or the most probable number method using liquid media). Unfortunately, n...

    journal_title:Research in microbiology

    pub_type: 杂志文章

    doi:10.1016/s0923-2508(00)00222-9

    authors: Regnault B,Martin-Delautre S,Lejay-Collin M,Lefèvre M,Grimont PA

    更新日期:2000-09-01 00:00:00

  • Structure and role of coupling proteins in conjugal DNA transfer.

    abstract::Type IV secretory systems are transmembrane bacterial multiprotein complexes. They are pivotal for conjugation, bacterial-induced plant tumour formation, toxin secretion and mammalian pathogen intracellular activity. These systems are involved in the spread of antibiotic resistance genes among bacteria by enabling con...

    journal_title:Research in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s0923-2508(02)01313-x

    authors: Gomis-Rüth FX,de la Cruz F,Coll M

    更新日期:2002-05-01 00:00:00

  • First description of bla IMP-8 in a Pseudomonas mendocina isolated at the Hospital Infante D. Pedro, Aveiro, Portugal.

    abstract::Pseudomonas mendocina carrying a novel class 1 integron containing an IMP-8 gene was isolated from an inanimate surface in a female ward sanitary facility of the Hospital Infante D. Pedro, Aveiro, Portugal. Hybridization with the integrase gene (intI1) and 16S rDNA revealed that the integron is chromosomally located. ...

    journal_title:Research in microbiology

    pub_type: 杂志文章

    doi:10.1016/j.resmic.2010.03.004

    authors: Santos C,Caetano T,Ferreira S,Mendo S

    更新日期:2010-05-01 00:00:00

  • Molecular genetic characterisation of whiB3, a mycobacterial homologue of a Streptomyces sporulation factor.

    abstract::WhiB is an essential sporulation factor in Streptomyces coelicolor. We report here the molecular genetic characterisation of whiB3, a whiB-like gene in the nonspore-forming Mycobacterium smegmatis mc(2)155. M. smegmatis whiB3 encodes a 96-amino-acid protein with 81% similarity to its M. tuberculosis counterpart identi...

    journal_title:Research in microbiology

    pub_type: 杂志文章

    doi:10.1016/s0923-2508(99)80055-2

    authors: Hutter B,Dick T

    更新日期:1999-06-01 00:00:00

  • DNA fingerprinting by random amplified polymorphic DNA and restriction fragment length polymorphism is useful for yeast typing.

    abstract::Random amplified polymorphic DNA (RAPD) analysis was applied to genomic DNA from nineteen yeast strains belonging to the genera Saccharomyces and Zygosaccharomyces. Results obtained with five primers indicated that this technique is a powerful tool for yeast differentiation and identification. The data were consistent...

    journal_title:Research in microbiology

    pub_type: 杂志文章

    doi:10.1016/0923-2508(96)80565-1

    authors: Paffetti D,Barberio C,Casalone E,Cavalieri D,Fani R,Fia G,Mori E,Polsinelli M

    更新日期:1995-09-01 00:00:00

  • Secondary metabolites of Aspergillus exert immunobiological effects on human monocytes.

    abstract::This project focused on the effects of aflatoxin B1 (AFB1), a food-contaminating mycotoxin produced by fungi, genus Aspergillus, on the release and genetic expression of some important cytokines, i.e., (interleukin-1 alpha (IL-1 alpha), IL-6, tumor necrosis factor-alpha (TNF alpha)) by human monocytes. Monocytes, prei...

    journal_title:Research in microbiology

    pub_type: 杂志文章

    doi:10.1016/s0923-2508(99)80042-4

    authors: Rossano F,Ortega De Luna L,Buommino E,Cusumano V,Losi E,Catania MR

    更新日期:1999-01-01 00:00:00

  • Diversity of the mechanisms of resistance to beta-lactam antibiotics.

    abstract::The sensitivity of a bacterium to beta-lactam antibiotics depends upon the interplay between 3 independent factors: the sensitivity of the essential penicillin-binding enzyme(s), the quantity and properties of the beta-lactamase(s) and the diffusion barrier that the outer-membrane of Gram-negative bacteria can represe...

    journal_title:Research in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/0923-2508(91)90084-n

    authors: Frère JM,Joris B,Granier B,Matagne A,Jacob F,Bourguignon-Bellefroid C

    更新日期:1991-07-01 00:00:00

  • Microaerophilic bacteria transduce energy via oxidative metabolic gearing.

    abstract::Heterotrophic microaerophilic bacteria, a diverse and ubiquitous group, are specialized for growth in O2 limited environments. Until recently, microaerophilic bacteria have been grouped with obligate aerobic organisms whose metabolic rates slow in response to physiological O2 limitation. In contrast, microaerophilic b...

    journal_title:Research in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.resmic.2003.11.001

    authors: Ludwig RA

    更新日期:2004-03-01 00:00:00

  • Chitinolytic activity at low temperature of an Antarctic strain (A3) of Verticillium lecanii.

    abstract::The chitinolytic activity of Verticillium cfr. lecanii A3, a strain isolated from continental Antarctica, was compared to those of two selected strains of Trichoderma harzianum. After 72 h of incubation at 25 degrees C in media containing chitin as the sole carbon source, all strains showed the same enzyme activity (c...

    journal_title:Research in microbiology

    pub_type: 杂志文章

    doi:10.1016/s0923-2508(98)80304-5

    authors: Fenice M,Selbmann L,Di Giambattista R,Federici F

    更新日期:1998-04-01 00:00:00

  • Isolation and characterization of a diazotrophic, oxalate-oxidizing bacterium from sour grass (Oxalis pes-caprae L.).

    abstract::A new type of nitrogen-fixing, oxalate-oxidizing Azospirillum sp. was isolated from the roots of Oxalis pes-caprae. Polyphasic taxonomy was performed, including auxanography using API galleries, physiological tests and 16S rRNA sequence comparison. Optimum growth occurred at 30 degrees C, pH 7.5. Growth was observed a...

    journal_title:Research in microbiology

    pub_type: 杂志文章

    doi:10.1016/j.resmic.2004.10.009

    authors: Sahin N

    更新日期:2005-04-01 00:00:00

  • Breaking free: "protein antibiotics" and phage lysis.

    abstract::Bacteriophages must destroy the bacterial cell wall to lyse their host and release their progeny into the environment. There are at least two distinct mechanisms by which phages destroy the cell wall. Bacteriophages with large genomes use a holin-endolysin system, while bacteriophages with small genomes encode a singl...

    journal_title:Research in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s0923-2508(02)01330-x

    authors: Bernhardt TG,Wang IN,Struck DK,Young R

    更新日期:2002-10-01 00:00:00

  • Direction of hyphal growth: a relevant parameter in the development of filamentous fungi.

    abstract::Macroscopic and microscopic measurements of the growth of Trichoderma viride and Rhizopus oligosporus were compared at different values of water activity of the solid medium. The relationship between radial extension rate and hyphal growth rate was found to be dependent on water activity. The observed difference betwe...

    journal_title:Research in microbiology

    pub_type: 杂志文章

    doi:10.1016/0923-2508(92)90106-x

    authors: Molin P,Gervais P,Lemière JP,Davet T

    更新日期:1992-10-01 00:00:00

  • Identification of Bacillus subtilis adaptive response genes by subtractive differential hybridization.

    abstract::Subtractive differential hybridization was used to identify genes in Bacillus subtilis that are induced by nutrient limitation. Several transcription units were identified. They exhibited increased transcription when cells were deprived of certain nutrients, such as glucose, ammonium, or phosphate, or when cells were ...

    journal_title:Research in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/0923-2508(91)90059-j

    authors: Mueller JP,Mathiopoulos C,Slack FJ,Sonenshein AL

    更新日期:1991-09-01 00:00:00

  • Mitochondrial ABC transporters.

    abstract::In contrast to bacteria, mitochondria contain only a few ATP binding cassette (ABC) transporters in their inner membrane. The known mitochondrial ABC proteins fall into two major classes that, in the yeast Saccharomyces cerevisiae, are represented by the half-transporter Atm1p and the two closely homologous proteins M...

    journal_title:Research in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s0923-2508(01)01204-9

    authors: Lill R,Kispal G

    更新日期:2001-04-01 00:00:00

  • Efficient respiration on TMAO requires TorD and TorE auxiliary proteins in Shewanella oneidensis.

    abstract::Respiration on trimethylamine oxide (TMAO) allows bacterial survival under anoxia. In Shewanella oneidensis, Tor is the system involved in TMAO respiration and it is encoded by the torECAD operon. The torA and torC genes encode TorA terminal reductase and the TorC c-type cytochrome, respectively. Sequence analysis sug...

    journal_title:Research in microbiology

    pub_type: 杂志文章

    doi:10.1016/j.resmic.2016.05.004

    authors: Lemaire ON,Honoré FA,Jourlin-Castelli C,Méjean V,Fons M,Iobbi-Nivol C

    更新日期:2016-10-01 00:00:00

  • Novel gene cassettes and integrons in antibiotic-resistant bacteria isolated from urban wastewaters.

    abstract::In this study, the occurrence and diversity of integrons were evaluated in 697 isolates belonging to Enterobacteriaceae and Aeromonas spp. isolated from urban wastewaters. Screening of integrons was performed by dot blot hybridization and intI-positive strains were further characterized. The global prevalence of integ...

    journal_title:Research in microbiology

    pub_type: 杂志文章

    doi:10.1016/j.resmic.2011.10.010

    authors: Moura A,Pereira C,Henriques I,Correia A

    更新日期:2012-02-01 00:00:00

  • The Institut Pasteur attic dwellers: their origins, their paths to discovery.

    abstract::Although this volume is dedicated to honoring François Jacob, I would like my contribution to broaden the context by recalling the background within which the scientists of those times operated. The specific scientific accomplishments of Jacob will certainly be covered by the other contributors who collaborated with h...

    journal_title:Research in microbiology

    pub_type: 传,历史文章,杂志文章

    doi:10.1016/j.resmic.2014.05.027

    authors: Cohn M

    更新日期:2014-06-01 00:00:00

  • New cblA gene participates in regulation of cobalt-dependent transcription of nitrile hydratase genes in Rhodococcus rhodochrous.

    abstract::Rhodococcus strains are important biocatalysts used for biotechnological production of acrylamide catalysed by a nitrile hydratase (NHase) containing cobalt. This metalloenzyme is present at high intracellular concentrations representing up to 50% of the soluble proteins in Rhodococcus rhodochrous M8 strain. Cobalt io...

    journal_title:Research in microbiology

    pub_type: 杂志文章

    doi:10.1016/j.resmic.2018.03.006

    authors: Lavrov KV,Shemyakina AO,Grechishnikova EG,Novikov AD,Derbikov DD,Kalinina TI,Yanenko AS

    更新日期:2018-01-01 00:00:00

  • Characterization and chromosomal organization of the murD-murC-ftsQ region of Corynebacterium glutamicum ATCC 13869.

    abstract::The sequence of a 4.6-kb region of DNA from Corynebacterium glutamicum ATCC 13869 lying upstream from the ftsQ-ftsZ region has been determined. The region contains four genes with high similarity to the murD, ftsW, murG, and murC genes from different microorganisms. The products of these mur genes probably catalyse se...

    journal_title:Research in microbiology

    pub_type: 杂志文章

    doi:10.1016/j.resmic.2003.11.003

    authors: Ramos A,Honrubia MP,Vega D,Ayala JA,Bouhss A,Mengin-Lecreulx D,Gil JA

    更新日期:2004-04-01 00:00:00

  • Function analysis of RNase E in the filamentous cyanobacterium Anabaena sp. PCC 7120.

    abstract::RNase E is an endoribonuclease and plays a central role in RNA metabolism. Cyanobacteria, as ancient oxygen-producing photosynthetic bacteria, also contain RNase E homologues. Here, we introduced mutations into the S1 subdomain (F53A), the 5'-sensor subdomain (R160A), and the DNase I subdomain (D296A) according to the...

    journal_title:Research in microbiology

    pub_type: 杂志文章

    doi:10.1016/j.resmic.2020.06.001

    authors: Yan H,Cheng Y,Wang L,Chen W

    更新日期:2020-01-01 00:00:00

  • Spirochete chemotaxis, motility, and the structure of the spirochetal periplasmic flagella.

    abstract::Spirochetes have a unique motility system that is characterized by flagellar filaments contained within the outer membrane sheath. Direct evidence using video microscopy has recently been obtained which indicates that these periplasmic flagella (PF) rotate in several spirochetal species. This rotation generates thrust...

    journal_title:Research in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/0923-2508(92)90117-7

    authors: Charon NW,Greenberg EP,Koopman MB,Limberger RJ

    更新日期:1992-07-01 00:00:00

  • Comparative performance of different PCR assays for the identification of Campylobacter jejuni and Campylobacter coli.

    abstract::The sensitivity and specificity of 7 PCR assays described for the identification of Campylobacter jejuni and Campylobacter coli were examined using alkaline cell lysates from a collection of 100 well characterized reference strains of C. jejuni, C. coli, Campylobacter lari and related Campylobacter, Helicobacter and A...

    journal_title:Research in microbiology

    pub_type: 杂志文章

    doi:10.1016/j.resmic.2007.11.020

    authors: Debruyne L,Samyn E,De Brandt E,Vandenberg O,Heyndrickx M,Vandamme P

    更新日期:2008-03-01 00:00:00