Identification of RNA-Binding Proteins as Targetable Putative Oncogenes in Neuroblastoma.

Abstract:

:Neuroblastoma is a common childhood cancer with almost a third of those affected still dying, thus new therapeutic strategies need to be explored. Current experimental therapies focus mostly on inhibiting oncogenic transcription factor signalling. Although LIN28B, DICER and other RNA-binding proteins (RBPs) have reported roles in neuroblastoma development and patient outcome, the role of RBPs in neuroblastoma is relatively unstudied. In order to elucidate novel RBPs involved in MYCN-amplified and other high-risk neuroblastoma subtypes, we performed differential mRNA expression analysis of RBPs in a large primary tumour cohort (n = 498). Additionally, we found via Kaplan-Meier scanning analysis that 685 of the 1483 tested RBPs have prognostic value in neuroblastoma. For the top putative oncogenic candidates, we analysed their expression in neuroblastoma cell lines, as well as summarised their characteristics and existence of chemical inhibitors. Moreover, to help explain their association with neuroblastoma subtypes, we reviewed candidate RBPs' potential as biomarkers, and their mechanistic roles in neuronal and cancer contexts. We found several highly significant RBPs including RPL22L1, RNASEH2A, PTRH2, MRPL11 and AFF2, which remain uncharacterised in neuroblastoma. Although not all RBPs appear suitable for drug design, or carry prognostic significance, we show that several RBPs have strong rationale for inhibition and mechanistic studies, representing an alternative, but nonetheless promising therapeutic strategy in neuroblastoma treatment.

journal_name

Int J Mol Sci

authors

Bell JL,Hagemann S,Holien JK,Liu T,Nagy Z,Schulte JH,Misiak D,Hüttelmaier S

doi

10.3390/ijms21145098

subject

Has Abstract

pub_date

2020-07-19 00:00:00

issue

14

issn

1422-0067

pii

ijms21145098

journal_volume

21

pub_type

杂志文章
  • Hamster Melatonin Receptors: Cloning and Binding Characterization of MT₁ and Attempt to Clone MT₂.

    abstract::For many years, it was of interest to identify the sequences encoding the two melatonin receptors (MT₁ and MT₂) from various species. After publishing the basic molecular characterization of the human, rat, mouse, sheep, and platypus MT₁, MT₂, or Mel1c receptors, we began cloning the genes from other animals, such as ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19071957

    authors: Gautier C,Dufour E,Dupré C,Lizzo G,Caignard S,Riest-Fery I,Brasseur C,Legros C,Delagrange P,Nosjean O,Simonneaux V,Boutin JA,Guenin SP

    更新日期:2018-07-04 00:00:00

  • Preparation and characterization of micronized artemisinin via a Rapid Expansion of Supercritical Solutions (RESS) Method.

    abstract::The particle sizes of pharmaceutical substances are important for their bioavailability. Bioavailability can be improved by reducing the particle size of the drug. In this study, artemisinin was micronized by the rapid expansion of supercritical solutions (RESS). The particle size of the unprocessed white needle-like ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms13045060

    authors: Yu H,Zhao X,Zu Y,Zhang X,Zu B,Zhang X

    更新日期:2012-01-01 00:00:00

  • Parameters for Optoperforation-Induced Killing of Cancer Cells Using Gold Nanoparticles Functionalized With the C-terminal Fragment of Clostridium Perfringens Enterotoxin.

    abstract::Recently, we used a recombinant produced C-terminus (D194-F319) of the Clostridium perfringens enterotoxin (C-CPE) to functionalize gold nanoparticles (AuNPs) for a subsequent specific killing of claudin expressing tumor cells using the gold nanoparticle-mediated laser perforation (GNOME-LP) technique. For a future in...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20174248

    authors: Becker A,Lehrich T,Kalies S,Heisterkamp A,Ngezahayo A

    更新日期:2019-08-30 00:00:00

  • Coarse grained molecular dynamics simulations of transmembrane protein-lipid systems.

    abstract::Many biological cellular processes occur at the micro- or millisecond time scale. With traditional all-atom molecular modeling techniques it is difficult to investigate the dynamics of long time scales or large systems, such as protein aggregation or activation. Coarse graining (CG) can be used to reduce the number of...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms11062393

    authors: Spijker P,van Hoof B,Debertrand M,Markvoort AJ,Vaidehi N,Hilbers PA

    更新日期:2010-06-09 00:00:00

  • De Novo Sequencing and Analysis of the Safflower Transcriptome to Discover Putative Genes Associated with Safflor Yellow in Carthamus tinctorius L.

    abstract::Safflower (Carthamus tinctorius L.), an important traditional Chinese medicine, is cultured widely for its pharmacological effects, but little is known regarding the genes related to the metabolic regulation of the safflower's yellow pigment. To investigate genes related to safflor yellow biosynthesis, 454 pyrosequenc...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms161025657

    authors: Liu X,Dong Y,Yao N,Zhang Y,Wang N,Cui X,Li X,Wang Y,Wang F,Yang J,Guan L,Du L,Li H,Li X

    更新日期:2015-10-26 00:00:00

  • Quantitative Phosphoproteomic and Physiological Analyses Provide Insights into the Formation of the Variegated Leaf in Catalpa fargesii.

    abstract::Variegated plants are valuable materials for investigating leaf color regulated mechanisms. To unveil the role of posttranslational modification in the variegated phenotype, we conducted global quantitative phosphoproteomic analysis on different leaf color sectors of Maiyuanjinqiu and the corresponding of Catalpa farg...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20081895

    authors: Wang N,Zhu T,Lu N,Wang Z,Yang G,Qu G,Kong L,Zhang S,Ma W,Wang J

    更新日期:2019-04-17 00:00:00

  • Fabrication of In Vitro Cancer Microtissue Array on Fibroblast-Layered Nanofibrous Membrane by Inkjet Printing.

    abstract::In general, a drug candidate is evaluated using 2D-cultured cancer cells followed by an animal model. Despite successful preclinical testing, however, most drugs that enter human clinical trials fail. The high failure rates are mainly caused by incompatibility between the responses of the current models and humans. He...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms18112348

    authors: Park TM,Kang D,Jang I,Yun WS,Shim JH,Jeong YH,Kwak JY,Yoon S,Jin S

    更新日期:2017-11-07 00:00:00

  • Endometrial Stromal Cells Circulate in the Bloodstream of Women with Endometriosis: A Pilot Study.

    abstract::Endometriosis is characterized by the presence of endometrial tissue outside the uterus. While endometriotic tissue is commonly localized in the pelvic cavity, it can also be found in distant sites, including the brain. The origin and pathophysiology of tissue migration is poorly understood; retrograde menstruation is...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20153740

    authors: Vallvé-Juanico J,López-Gil C,Ballesteros A,Santamaria X

    更新日期:2019-07-31 00:00:00

  • Theophylline-Based KMUP-1 Improves Steatohepatitis via MMP-9/IL-10 and Lipolysis via HSL/p-HSL in Obese Mice.

    abstract::KMUP-1 (7-[2-[4-(2-chlorobenzene)piperazinyl]ethyl]-1,3-dimethylxanthine) has been reported to cause hepatic fat loss. However, the action mechanisms of KMUP-1 in obesity-induced steatohepatitis remains unclear. This study elucidated the steatohepatitis via matrix metallopeptidase 9 (MMP-9) and tumor necrosis factor α...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms17081345

    authors: Wu BN,Kuo KK,Chen YH,Chang CT,Huang HT,Chai CY,Dai ZK,Chen IJ

    更新日期:2016-08-17 00:00:00

  • Human DNA Virus Exploitation of the MAPK-ERK Cascade.

    abstract::The extracellular signal-regulated kinases (ERKs) comprise a particular branch of the mitogen-activated protein kinase cascades (MAPK) that transmits extracellular signals into the intracellular environment to trigger cellular growth responses. Similar to other MAPK cascades, the MAPK-ERK pathway signals through three...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms20143427

    authors: DuShane JK,Maginnis MS

    更新日期:2019-07-12 00:00:00

  • Oxaloacetate Ameliorates Chemical Liver Injury via Oxidative Stress Reduction and Enhancement of Bioenergetic Fluxes.

    abstract::Chemical injury is partly due to free radical lipid peroxidation, which can induce oxidative stress and produce a large number of reactive oxygen species (ROS). Oxaloacetic acid is an important intermediary in the tricarboxylic acid cycle (TCA cycle) and participates in metabolism and energy production. In our study, ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19061626

    authors: Kuang Y,Han X,Xu M,Wang Y,Zhao Y,Yang Q

    更新日期:2018-05-31 00:00:00

  • Effect of Auxin (IAA) on the Fast Vacuolar (FV) Channels in Red Beet (Beta vulgaris L.) Taproot Vacuoles.

    abstract::In contrast to the well-studied effect of auxin on the plasma membrane K+ channel activity, little is known about the role of this hormone in regulating the vacuolar K+ channels. Here, the patch-clamp technique was used to investigate the effect of auxin (IAA) on the fast-activating vacuolar (FV) channels. It was foun...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21144876

    authors: Burdach Z,Siemieniuk A,Karcz W

    更新日期:2020-07-10 00:00:00

  • Phosphatidylcholine Passes by Paracellular Transport to the Apical Side of the Polarized Biliary Tumor Cell Line Mz-ChA-1.

    abstract::Phosphatidylcholine (PC) translocation into mucus of the intestine was shown to occur via a paracellular transport across the apical/lateral tight junction (TJ) barrier. In case this could also be operative in biliary epithelial cells, this may have implication for the pathogenesis of primary sclerosing cholangitis (P...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20164034

    authors: Stremmel W,Staffer S,Weiskirchen R

    更新日期:2019-08-19 00:00:00

  • The Contribution of Oxidative Stress and Inflamm-Aging in Human and Equine Asthma.

    abstract::Aging is associated with a dysregulation of the immune system, leading to a general pro-inflammatory state of the organism, a process that has been named inflamm-aging. Oxidative stress has an important role in aging and in the regulation of immune responses, probably playing a role in the development of age-related d...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms18122612

    authors: Bullone M,Lavoie JP

    更新日期:2017-12-05 00:00:00

  • CRISPR/Cas9 Editing for Gaucher Disease Modelling.

    abstract::Gaucher disease (GD) is an autosomal recessive lysosomal storage disorder caused by mutations in the acid β-glucosidase gene (GBA1). Besides causing GD, GBA1 mutations constitute the main genetic risk factor for developing Parkinson's disease. The molecular basis of neurological manifestations in GD remain elusive. Ho...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21093268

    authors: Pavan E,Ormazabal M,Peruzzo P,Vaena E,Rozenfeld P,Dardis A

    更新日期:2020-05-05 00:00:00

  • Standards for Deriving Nonhuman Primate-Induced Pluripotent Stem Cells, Neural Stem Cells and Dopaminergic Lineage.

    abstract::Humans and nonhuman primates (NHP) are similar in behavior and in physiology, specifically the structure, function, and complexity of the immune system. Thus, NHP models are desirable for pathophysiology and pharmacology/toxicology studies. Furthermore, NHP-derived induced pluripotent stem cells (iPSCs) may enable tra...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19092788

    authors: Yang G,Hong H,Torres A,Malloy KE,Choudhury GR,Kim J,Daadi MM

    更新日期:2018-09-17 00:00:00

  • Hypoxia Pathway Proteins are Master Regulators of Erythropoiesis.

    abstract::Erythropoiesis is a complex process driving the production of red blood cells. During homeostasis, adult erythropoiesis takes place in the bone marrow and is tightly controlled by erythropoietin (EPO), a central hormone mainly produced in renal EPO-producing cells. The expression of EPO is strictly regulated by local ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21218131

    authors: Watts D,Gaete D,Rodriguez D,Hoogewijs D,Rauner M,Sormendi S,Wielockx B

    更新日期:2020-10-30 00:00:00

  • Involvement of Satellite Cell Activation via Nitric Oxide Signaling in Ectopic Orofacial Hypersensitivity.

    abstract::: The mechanical head-withdrawal threshold (MHWT) was significantly reduced following inferior alveolar nerve transection (IANX) in rats. Nitrate and nitrite synthesis was dramatically increased in the trigeminal ganglion (TG) at 6 h after the IANX. The relative number of neuronal nitric oxide synthase (nNOS)-immunore...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21041252

    authors: Lee J,Ohara K,Shinoda M,Hayashi Y,Kubo A,Sugawara S,Asano S,Soma K,Kanno K,Ando M,Koyama R,Kimura Y,Sakanashi K,Iinuma T,Iwata K

    更新日期:2020-02-13 00:00:00

  • Nuclear-Biased DUSP6 Expression is Associated with Cancer Spreading Including Brain Metastasis in Triple-Negative Breast Cancer.

    abstract::DUSP6 is a dual-specificity phosphatase (DUSP) involved in breast cancer progression, recurrence, and metastasis. DUSP6 is predominantly cytoplasmic in HER2+ primary breast cancer cells, but the expression and subcellular localization of DUSPs, especially DUSP6, in HER2-positive circulating tumor cells (CTCs) is unkno...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20123080

    authors: Wu F,McCuaig RD,Sutton CR,Tan AHY,Jeelall Y,Bean EG,Dai J,Prasanna T,Batham J,Malik L,Yip D,Dahlstrom JE,Rao S

    更新日期:2019-06-24 00:00:00

  • Exploiting Gene Expression Profiles for the Automated Prediction of Connectivity between Brain Regions.

    abstract::The brain comprises a complex system of neurons interconnected by an intricate network of anatomical links. While recent studies demonstrated the correlation between anatomical connectivity patterns and gene expression of neurons, using transcriptomic information to automatically predict such patterns is still an open...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20082035

    authors: Roberti I,Lovino M,Di Cataldo S,Ficarra E,Urgese G

    更新日期:2019-04-25 00:00:00

  • Low-Cost Cellulase-Hemicellulase Mixture Secreted by Trichoderma harzianum EM0925 with Complete Saccharification Efficacy of Lignocellulose.

    abstract::Fermentable sugars are important intermediate products in the conversion of lignocellulosic biomass to biofuels and other value-added bio-products. The main bottlenecks limiting the production of fermentable sugars from lignocellulosic biomass are the high cost and the low saccharification efficiency of degradation en...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21020371

    authors: Zhang Y,Yang J,Luo L,Wang E,Wang R,Liu L,Liu J,Yuan H

    更新日期:2020-01-07 00:00:00

  • Restoration of Sarcoplasmic Reticulum Ca2+ ATPase (SERCA) Activity Prevents Age-Related Muscle Atrophy and Weakness in Mice.

    abstract::Sarcopenia has a significant negative impact on healthspan in the elderly and effective pharmacologic interventions remain elusive. We have previously demonstrated that sarcopenia is associated with reduced activity of the sarcoplasmic reticulum Ca2+ ATPase (SERCA) pump. We asked whether restoring SERCA activity using...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms22010037

    authors: Qaisar R,Pharaoh G,Bhaskaran S,Xu H,Ranjit R,Bian J,Ahn B,Georgescu C,Wren JD,Van Remmen H

    更新日期:2020-12-22 00:00:00

  • Dynamics of Plant Metabolism during Cold Acclimation.

    abstract::Plants have evolved strategies to tightly regulate metabolism during acclimation to a changing environment. Low temperature significantly constrains distribution, growth and yield of many temperate plant species. Exposing plants to low but non-freezing temperature induces a multigenic processes termed cold acclimation...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms20215411

    authors: Fürtauer L,Weiszmann J,Weckwerth W,Nägele T

    更新日期:2019-10-30 00:00:00

  • Identification of Oxidative Stress in Red Blood Cells with Nanoscale Chemical Resolution by Infrared Nanospectroscopy.

    abstract::During their lifespan, Red blood cells (RBC), due to their inability to self-replicate, undergo an ageing degradation phenomenon. This pathway, both in vitro and in vivo, consists of a series of chemical and morphological modifications, which include deviation from the biconcave cellular shape, oxidative stress, membr...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19092582

    authors: Ruggeri FS,Marcott C,Dinarelli S,Longo G,Girasole M,Dietler G,Knowles TPJ

    更新日期:2018-08-30 00:00:00

  • QTL Mapping Reveals the Relationship between Pasting Properties and Malt Extract in Barley.

    abstract::Pasting properties are important characteristics of barley starch from a processing standpoint. Many studies reported the close relationship between pasting properties and malting quality, especially malt extract. However, most conclusions were derived from the correlation between pasting properties and malting qualit...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19113559

    authors: Wang J,Yang J,Hua W,Wu X,Zhu J,Shang Y,Zhou M

    更新日期:2018-11-12 00:00:00

  • Escherichia coli O157:H7 F9 Fimbriae Recognize Plant Xyloglucan and Elicit a Response in Arabidopsis thaliana.

    abstract::Fresh produce is often a source of enterohaemorrhagic Escherichia coli (EHEC) outbreaks. Fimbriae are extracellular structures involved in cell-to-cell attachment and surface colonisation. F9 (Fml) fimbriae have been shown to be expressed at temperatures lower than 37 °C, implying a function beyond the mammalian host....

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21249720

    authors: Holmes A,Rossez Y,Wright KM,Hedley PE,Morris J,Willats WGT,Holden NJ

    更新日期:2020-12-19 00:00:00

  • Human Leukocyte Antigen C*12:02:02 and Killer Immunoglobulin-Like Receptor 2DL5 are Distinctly Associated with Ankylosing Spondylitis in the Taiwanese.

    abstract::Human leukocyte antigen (HLA) class I ligands and Killer immunoglobulin-like receptors (KIRs) regulate the cytolytic activity of natural killer (NK) cells and certain T cells. We examined their genetic predisposition to disease susceptibility and clinical phenotypes in Taiwanese ankylosing spondylitis (AS) patients. K...

    journal_title:International journal of molecular sciences

    pub_type: 临床试验,杂志文章

    doi:10.3390/ijms18081775

    authors: Wang CM,Wang SH,Jan Wu YJ,Lin JC,Wu J,Chen JY

    更新日期:2017-08-16 00:00:00

  • Influence of unmodified and β-glycerophosphate cross-linked chitosan on anti-Candida activity of clotrimazole in semi-solid delivery systems.

    abstract::The combination of an antifungal agent and drug carrier with adjunctive antimicrobial properties represents novel strategy of complex therapy in pharmaceutical technology. The goal of this study was to investigate the unmodified and ion cross-linked chitosan's influence on anti-Candida activity of clotrimazole used as...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms151017765

    authors: Szymańska E,Winnicka K,Wieczorek P,Sacha PT,Tryniszewska EA

    更新日期:2014-09-30 00:00:00

  • Ectopic expression of CsCTR1, a cucumber CTR-like gene, attenuates constitutive ethylene signaling in an Arabidopsis ctr1-1 mutant and expression pattern analysis of CsCTR1 in cucumber (Cucumis sativus).

    abstract::The gaseous plant hormone ethylene regulates many aspects of plant growth, development and responses to the environment. Constitutive triple response 1 (CTR1) is a central regulator involved in the ethylene signal transduction pathway. To obtain a better understanding of this particular pathway in cucumber, the cDNA-e...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms150916331

    authors: Bie B,Sun J,Pan J,He H,Cai R

    更新日期:2014-09-15 00:00:00

  • Proteomics Analysis Reveals that Warburg Effect along with Modification in Lipid Metabolism Improves In Vitro Embryo Development under Low Oxygen.

    abstract::The molecular mechanism regulating embryo development under reduced oxygen tension remains elusive. This study aimed to identify the molecular mechanism impacting embryo development under low oxygen conditions. Buffalo embryos were cultured under 5% or 20% oxygen and were evaluated according to their morphological par...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21061996

    authors: Shahzad Q,Pu L,Ahmed Wadood A,Waqas M,Xie L,Shekhar Pareek C,Xu H,Liang X,Lu Y

    更新日期:2020-03-14 00:00:00