Identification and characterization of a recombinant cognate hemoglobin reductase from Synechocystis sp. PCC 6803.

Abstract:

:One popular and relevant proposed function for cyanobacterial hemoglobin (Synechocystis Hb) is anaerobic nitrite reductase in vivo. During such reduction reactions, the hexacoordinated heme iron atom of SynHb is oxidized from the ferrous (Fe+2) to ferric (Fe+3) state and prevent damage by limiting the concentration of toxic metabolites such as nitrite. In order to perform these functions in vivo, there must be a mechanism that converts inactive Fe+3-SynHb back to the active Fe+2-SynHb to accomplish the nitrite reductase function. Here, we report a cognate reductase protein for Synechocystis hemoglobin which can reduce the Fe+3-SynHb to Fe+2-SynHb, thus lending a support to the proposed nitrite reductase function. This reductase is also able to reduce pentacoordinate Hbs such as myoglobin but with lower affinity compared to hexacoordinate SynHb. Insilico model of reductase protein-cyanobacterial hemoglobin complex revealed that the heme active site of Hb faces the catalytic center of the reductase protein and several amino acids in the interface interacts non-covalently thus favoring their interaction. Overall, our in vitro study provides the basic foundation for the understanding of the specific molecular mechanism of action and interaction of the SynHb reductase protein, which need to be investigated in further detail.

journal_name

Int J Biol Macromol

authors

Uppal S,Khan MA,Kundu S

doi

10.1016/j.ijbiomac.2020.06.214

subject

Has Abstract

pub_date

2020-11-01 00:00:00

pages

1054-1063

eissn

0141-8130

issn

1879-0003

pii

S0141-8130(20)33664-3

journal_volume

162

pub_type

杂志文章
  • Physicochemical properties and activities of comfrey polysaccharides extracted by different techniques.

    abstract::The effects of extraction techniques on the physicochemical properties, antioxidant activity and antihyperglycemic activity of comfrey polysaccharides (CPs) were evaluated. Four techniques were used to extract CPs: hot water extraction (HW), ultrasonic-assisted extraction (UA), enzyme-assisted extraction (EA) and enzy...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2018.04.188

    authors: Duan M,Shang H,Chen S,Li R,Wu H

    更新日期:2018-08-01 00:00:00

  • Chain length effects of oligo(L-lysine)-shelled dendrimers on interaction with DNA.

    abstract::The interaction of novel oligo(L-lysine)-shelled dendrimers (G3-PLL) with DNA was studied by means of circular dichroism spectroscopy, dynamic light scattering, and melting behavior of double-stranded DNA. G3-PLLs having various oligo(L-lysine) (PLL) segment (n = 5-40) were successfully synthesized by graft-polymeriza...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2006.01.017

    authors: Higashi N,Uchino A,Mizuguchi Y,Niwa M

    更新日期:2006-03-30 00:00:00

  • Biophysical insight into structure-function relation of Allium sativum Protease Inhibitor by thermal, chemical and pH-induced modulation using comprehensive spectroscopic analysis.

    abstract::In this study, we have analyzed the structural and functional changes in the nature of Allium sativum Protease Inhibitor (ASPI) on undergoing various denaturation with variable range of pH, temperature and urea (at pH 8.2). ASPI being anti-tryptic in nature has native molecular mass of ∼15kDa. The conformational stabi...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2017.05.075

    authors: Shamsi TN,Parveen R,Naz H,Haque MA,Fatima S

    更新日期:2017-10-01 00:00:00

  • Structural characterization and anticomplement activity of an acidic polysaccharide from Hedyotis diffusa.

    abstract::An acidic homogeneous polysaccharide (HD-PS-1) was purified from Hedyotis diffusa (Willd.) Roxb. HD-PS-1 possessed a backbone chain of →[4)-β-Glcp-3-OAc-(1]6→[6)-β-Manp-(1]2→6)-α-Galp-(1→[4)-α-Galp-(1]2→, with three branches of β-Manp-(1→3)-β-GlcpA, α-Rhap-(1→3)-α-Rhap and α-Galp attached to the backbone chain at O-4 ...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2019.11.132

    authors: Huo J,Lu Y,Jiao Y,Chen D

    更新日期:2020-07-15 00:00:00

  • Chitosan-functionalized nanofibers: A comprehensive review on challenges and prospects for food applications.

    abstract::Chitosan exhibits outstanding properties, which allow a wide range of applications. For this reason, chitosan-based biomaterials have been developed over the years and, among these biomaterials, chitosan-based nanomaterials may significantly change the material properties, which could result in some exceptional featur...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章,评审

    doi:10.1016/j.ijbiomac.2018.11.042

    authors: de Farias BS,Sant'Anna Cadaval Junior TR,de Almeida Pinto LA

    更新日期:2019-02-15 00:00:00

  • Genomic characterization provides genetic evidence for bacterial cellulose synthesis by Acetobacter pasteurianus RSV-4 strain.

    abstract::There is ongoing quest to look for alternate sustainable and renewable biopolymers which can address the existing environmental issues. Bacterial cellulose could be one such option. Several organisms have been reported to produce bacterial cellulose. Among this, acetic acid bacteria (AAB) are reported to be one of the...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.04.078

    authors: Thakur K,Kumar V,Kumar V,Yadav SK

    更新日期:2020-08-01 00:00:00

  • Structure-activity relationship of a recombinant hybrid Manganese superoxide dismutase of Staphylococcus saprophyticus/S. equorum.

    abstract::Recombinant hybrid Manganese superoxide dismutase from Staphyloccus saphropyticus/S. equorum (rMnSODSeq) exhibits stability at high temperatures. The enzyme occurs as a dimer that dissociates around 52°C prior to unfolding of the monomer around 64°C, demonstrating contribution of the dimeric form to stability. Here, s...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2017.01.096

    authors: Retnoningrum DS,Arumsari S,Artarini A,Ismaya WT

    更新日期:2017-05-01 00:00:00

  • The effects of chemical crosslinking manners on the physical properties and biocompatibility of collagen type I/hyaluronic acid composite hydrogels.

    abstract::It is necessary to use chemical crosslinking to regulate the mechanical properties, biodegradability and biocompatibility of hydrogels. In this study, three kinds of collagen type I (Col I)/hyaluronic acid (HA) hydrogels with the same ratio and different chemical crosslinking manners were designed and fabricated, and ...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.05.208

    authors: Kong W,Gao Y,Liu Q,Dong L,Guo L,Fan H,Fan Y,Zhang X

    更新日期:2020-10-01 00:00:00

  • High-level expression and enzymatic properties of a novel thermostable xylanase with high arabinoxylan degradation ability from Chaetomium sp. suitable for beer mashing.

    abstract::A novel thermostable xylanase gene from Chaetomium sp. CQ31 was cloned and codon-optimized (CsXynBop). The deduced protein sequence of the gene shared the highest similarity of 75% with the glycoside hydrolase (GH) family 10 xylanase from Achaetomium sp. Xz-8. CsXynBop was over-expressed in Pichia pastoris GS115 by hi...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.12.040

    authors: Yu J,Liu X,Guan L,Jiang Z,Yan Q,Yang S

    更新日期:2021-01-31 00:00:00

  • ESI-MS measurements for the equilibrium constants of copper(II)-insulin complexes.

    abstract::Trace elements regulate many biological reactions in the body. Copper(II) is known as one of trace elements and capable of binding to proteins. Insulin is a blood glucose-lowering peptide hormone and it is secreted by the pancreatic β-cells. In this study, Cu(II)-insulin complexes were investigated by using ESI-MS met...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2018.01.150

    authors: Gülfen M,Özdemir A,Lin JL,Chen CH

    更新日期:2018-06-01 00:00:00

  • Factors affecting the association of single- and double-stranded RNAs with montmorillonite nanoclays.

    abstract::Montmorillonite (MMT) nanoclays exist as single and stacked sheet-like structures with large surface areas that can form stable associations with many naturally occurring biomolecules, including nucleic acids. They have been utilized successfully as vehicles for delivery of both drugs and genes into cells. Most previo...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2017.12.124

    authors: Gujjari A,Rodriguez BV,Pescador J,Maeder C,Beall GW,Lewis LK

    更新日期:2018-04-01 00:00:00

  • Gel green fluorescence ssDNA aptasensor based on carbon nanotubes for detection of anthrax protective antigen.

    abstract::Bacillus anthracis, the causative agent of anthrax, is a harmful pathogen with potential ability as a biological weapon which persuades scientists to develop novel methods to detect anthrax from infected resources. In this study, a multi-walled carbon nanotube (MWCNTs)-based fluorescence aptasensor was fabricated to d...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2019.08.219

    authors: Karimi F,Dabbagh S

    更新日期:2019-11-01 00:00:00

  • Synthesis of acryloylated starch-g-poly acrylates crosslinked polymer functionalized by emulsified vinyltrimethylsilane derivative as a novel EOR agent for severe polymer flooding strategy.

    abstract::Starch is a natural polysaccharide with reasonable biodegradable properties, which grafted with vinyl monomers through different initiators to be applied in enhanced oil recovery (EOR) techniques. Several authors stated about starch modification through copolymerization and grafting of different monomers, however, the...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2018.11.056

    authors: El-Hoshoudy AN

    更新日期:2019-02-15 00:00:00

  • Preparation and characterization of solvent-free fluids reinforced and plasticized polylactic acid fibrous membrane.

    abstract::In this paper, the electronspun Polylactic acid (PLA)/TiO2 nanofluids (nfs) fibrous membrane with good toughness, hydrophilicity and antibacterial activities are fabricated by taking full advantages of solvent-free TiO2 nfs with amphiphilicity and ionic conductivity. The resulting PLA/TiO2 nfs fibrous membrane exhibit...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.06.027

    authors: Yu Q,Qin Y,Han M,Pan F,Han L,Yin X,Chen Z,Wang L,Wang H

    更新日期:2020-10-15 00:00:00

  • Comparative analysis of seven mitochondrial genomes of Phymatostetha (Hemiptera: Cercopidae) and phylogenetic implications.

    abstract::In this study, we present seven mitochondrial genomes (mitogenomes) of Phymatostetha. Each mitogenome contains the entire set of 37 genes, which arranged in the same order as the putative ancestral pattern of insects. The nucleotide composition of Phymatostetha mitogenomes is biased toward A/T, with rRNAs and PCG12 (i...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2018.12.174

    authors: Su T,Liang A

    更新日期:2019-03-15 00:00:00

  • Comparison of laccase-catalyzed cross-linking of organosolv lignin and lignosulfonates.

    abstract::Lignin, an underutilized by-product from chemical pulping of wood, can be modified enzymatically through oxidation by laccase. However, little is known about the molecular details surrounding the cross-linking which is a result of the oxidation. To reduce this lack of knowledge, we used oxygen consumption rate data, p...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2017.07.061

    authors: Gillgren T,Hedenström M,Jönsson LJ

    更新日期:2017-12-01 00:00:00

  • Rheological study of albumin and hyaluronan-albumin hydrogels: Effect of concentration, ionic strength, pH and molecular weight.

    abstract::Albumin and hyaluronic acid are biodegradable, endogenous substances with potential use as drug carriers. These properties combined with the physical structure of the gel can lead to the formation of biologically active materials with application in medicine. This work investigated the gelation process of albumin solu...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.06.063

    authors: Hájovská P,Chytil M,Kalina M

    更新日期:2020-10-15 00:00:00

  • Identification of a novel alkaline amylopullulanase from a gut metagenome of Hermetia illucens.

    abstract::A novel pullulanase gene, PulSS4, was identified from the gut microflora of Hermetia illucens by a function-based metagenome screening. The PulSS4 gene had an open reading frame of 4455 base pairs, and encoded a mature protein of 1484 amino acids, with a signal peptide sequence of 44 amino acids. The deduced amino aci...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2015.10.067

    authors: Lee YS,Seo SH,Yoon SH,Kim SY,Hahn BS,Sim JS,Koo BS,Lee CM

    更新日期:2016-01-01 00:00:00

  • Chitosan‑zinc sulfide nanoparticles, characterization and their photocatalytic degradation efficiency for azo dyes.

    abstract::Herein, chitosan‑zinc sulfide nanoparticles (CS-ZnS-NPs) were developed as an efficient photocatalyst for the degradation of toxic dyes. The as-synthesized CS-ZnS-NPs were analyzed using XRD, FTIR, SEM, and EDS. The functional groups of CS-ZnS-NPs were validated with FTIR spectroscopy. The SEM envisaged the average pa...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.02.310

    authors: Aziz A,Ali N,Khan A,Bilal M,Malik S,Ali N,Khan H

    更新日期:2020-06-15 00:00:00

  • Catalytic phenol removal using entrapped cross-linked laccase aggregates.

    abstract::Laccase was immobilized using a combinatorial strategy of cross-linking and entrapping in mesoporous silica to prepare entrapped enzyme species including simply adsorbed, entrapped cross-linked enzyme (E-CLE) and entrapped cross-linked enzyme aggregate (E-CLEA) to explore their potential in phenol removal. Parameters ...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2018.10.147

    authors: Fathali Z,Rezaei S,Faramarzi MA,Habibi-Rezaei M

    更新日期:2019-02-01 00:00:00

  • Sterilization and protection of protein in combinations of Camellia sinensis green tea extract and gamma irradiation.

    abstract::Sterilization of milk protein without heating is of great interest. Gamma irradiation is a very powerful method to decontaminated casein. Gamma-irradiation of proteins in aqueous media at doses higher than 5kGy is known to induce their aggregation (without oxygen) or degradation (in presence of oxygen). Camellia sinen...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2011.01.003

    authors: Saloua KS,Salah K,Nasreddine B,Samia A,Mouldi S,Ahmed L

    更新日期:2011-04-01 00:00:00

  • Fabrication of cationic chitin nanofiber/alginate composite materials.

    abstract::We have already found that an amidinated chitin, which was prepared by the reaction of a partially deacetylated chitin with N,N-dimethylacetamide dimethyl acetal, was converted into an amidinium chitin bicarbonate with nanofiber morphology by CO2 gas bubbling and ultrasonic treatments in water. In this study, we perfo...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2016.06.019

    authors: Sato K,Tanaka K,Takata Y,Yamamoto K,Kadokawa J

    更新日期:2016-10-01 00:00:00

  • Antimicrobial cerium ion-chitosan crosslinked alginate biopolymer films: A novel and potential wound dressing.

    abstract::Wound dressings require good antiseptic properties, mechanical strength and, more trustably, natural material ingredients. Antimicrobial properties of cerium ions and chitosan are known and alginate based wound dressings are commercially available. In this study, the advantages of these materials were combined and alg...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2017.07.144

    authors: Kaygusuz H,Torlak E,Akın-Evingür G,Özen İ,von Klitzing R,Erim FB

    更新日期:2017-12-01 00:00:00

  • Dual catalytic DNA circuit-induced gold nanoparticle aggregation: An enzyme-free and colorimetric strategy for amplified detection of nucleic acids.

    abstract::An enzyme-free dual catalytic DNA circuit for amplified detection of nucleic acids has been developed. The system functions based on a cyclic self-assembly of two auxiliary hairpins (H1 and H2) and three biotinylated hairpin oligonucleotides (H3, H4 and H5), in the format of two molecular circuits. In the upstream cir...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.03.059

    authors: Ravan H,Amandadi M,Hassanshahian M,Pourseyedi S

    更新日期:2020-07-01 00:00:00

  • Cellular imaging and folate receptor targeting delivery of gum kondagogu capped gold nanoparticles in cancer cells.

    abstract::In this study, the green synthesis of gum kondagogu capped gold nanoparticles (GK-GNPs) was prepared using a naturally available polysaccharide. The anionic gum capped GK-GNPs enabled the successful coupling of folic acid (FA) and fluorescein isothiocyanate (FITC) to produce a fluorescently labelled GNP (F2-GNP). F2-G...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2017.12.069

    authors: Kumar SSD,Mahesh A,Antoniraj MG,Rathore HS,Houreld NN,Kandasamy R

    更新日期:2018-04-01 00:00:00

  • Tough chitosan hydrogel based on purified regeneration and alkaline solvent as biomaterials for tissue engineering applications.

    abstract::The chitosan based on purified regeneration could be dissolved in 6wt% aqueous NaOH without freeze-thawing cycles and acetylation processing, and such a solution system was effective and different from other dissolving methods Upon heating, a tough hydrogel was constructed from the chitosan (purified regeneration) alk...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2017.06.017

    authors: Bi S,Bao Z,Bai X,Hu S,Cheng X,Chen X

    更新日期:2017-11-01 00:00:00

  • Sappanone A prevents hypoxia-induced injury in PC-12 cells by down-regulation of miR-15a.

    abstract:OBJECTIVE:We aimed to explore the effect of Sappanone A on neurologic damage induced by hypoxia. METHODS:PC-12 cells were pre-treated with Sappanone A and were simulated by hypoxia. miRNA transfection was performed to overexpress or suppress the expression of miR-15a in PC-12 cells. Cell viability, apoptosis, migratio...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2018.11.002

    authors: Kang C,Gao J,Kang M,Liu X,Fu Y,Wang L

    更新日期:2019-02-15 00:00:00

  • Effects of supplementation with L. plantarum TN8 encapsulated in alginate-chitosan in broiler chickens.

    abstract::This study was undertaken to investigate the effects of supplementation of probiotic strain Lactobacillus plantarum TN8 encapsulated in sodium alginate-chitosan or a commercial blend of essential oils on total cholesterol, High Density Lipoprotein (HDL), Low Density Lipoprotein (LDL) and growth performance of broiler ...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2016.05.044

    authors: Trabelsi I,Ktari N,Ben Slima S,Bouchaala K,Ben Salah R

    更新日期:2016-08-01 00:00:00

  • Incorporating allylated lignin-derivatives in thiol-ene gel-polymer electrolytes.

    abstract::Growing environmental and economic concerns as well as the uncertainty that accompanies finite petrochemical resources contributes to the increase in research and development of bio-based, renewable polymers. Concurrently, industrial and consumer demand for smaller, safer, and more flexible technologies motivates a gl...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2018.02.160

    authors: Baroncini EA,Stanzione JF 3rd

    更新日期:2018-07-01 00:00:00

  • Structural characterization, antioxidant and antimicrobial activity of water-soluble polysaccharides from bamboo (Phyllostachys pubescens Mazel) leaves.

    abstract::One water-soluble neutral polysaccharides (NPs), with an average molecular weight of 5.77 × 103 Da, was isolated from bamboo (Phyllostachys pubescens Mazel) leaves and the yield was 10.2% based on weight of raw material. Successively, two fractions (NPs-A and NPs-B) could be obtained after being eluted by DEAE-Sepharo...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2019.09.115

    authors: Xiao Z,Zhang Q,Dai J,Wang X,Yang Q,Cai C,Mao J,Ge Q

    更新日期:2020-01-01 00:00:00