Proton transfer in uncoupled variants of cytochrome c oxidase.

Abstract:

:Cytochrome c oxidase is a membrane-bound redox-driven proton pump that harbors two proton-transfer pathways, D and K, which are used at different stages of the reaction cycle. Here, we address the question if a D pathway with a modified energy landscape for proton transfer could take over the role of the K pathway when the latter is blocked by a mutation. Our data indicate that structural alterations near the entrance of the D pathway modulate energy barriers that influence proton transfer to the proton-loading site. The data also suggest that during reduction of the catalytic site, its protonation has to occur via the K pathway and that this proton transfer to the catalytic site cannot take place through the D pathway.

journal_name

FEBS Lett

journal_title

FEBS letters

authors

Vilhjálmsdóttir J,Albertsson I,Blomberg MRA,Ädelroth P,Brzezinski P

doi

10.1002/1873-3468.13679

subject

Has Abstract

pub_date

2020-03-01 00:00:00

pages

813-822

issue

5

eissn

0014-5793

issn

1873-3468

journal_volume

594

pub_type

杂志文章
  • Assignment of the Fe-N epsilon (His) stretching mode in the resonance Raman spectra of a monomeric insect cyanomethaemoglobin.

    abstract::Resonance Raman (RR) spectra of the monomeric cyanomethaemoglobin CTT III from insect larvae of Chironomus thummi thummi are shown for the range of 200-550 cm-1. By iron and cyanide isotope exchange a line varying between 307 cm-1 for 57Fe-13C15N and 311 cm-1 for 54Fe-12C14N, has been assigned to the Fe-N epsilon stre...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(84)81233-8

    authors: Kerr EA,Yu NT,Gersonde K

    更新日期:1984-12-03 00:00:00

  • Modulation of cofactor requirement for the activation of protein kinase C by heparin. Possible effect at the regulatory domain.

    abstract::Heparin was found to stimulate the phosphorylation of histone H1 but not protamine sulfate catalyzed by Ca2+/phospholipid-dependent protein kinase (protein kinase C or PKC). The effect of heparin on histone H1 phosphorylation appeared to be due to an increase in phosphatidylserine affinity for PKC activation in the pr...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(91)80533-9

    authors: Goueli SA,Hanten JA,Ahmed K

    更新日期:1991-05-06 00:00:00

  • Differential effects of molecular chaperones on refolding of homologous proteins.

    abstract::Three homologous aspartate aminotransferases with virtually identical spatial structures and pairwise amino acid sequence identities of > 40% differ markedly with respect to the yield of renaturation upon dilution from 6 M guanidine hydrochloride (mitochondrial < cytosolic < Escherichia coli). The enzymes also respond...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(95)01406-3

    authors: Widmann M,Christen P

    更新日期:1995-12-27 00:00:00

  • Reduced maximum capacity of glycolysis in brown adipose tissue of genetically obese, diabetic (db/db) mice and its restoration following treatment with a thermogenic beta-adrenoceptor agonist.

    abstract::The maximal activities of the key glycolytic enzymes hexokinase and 6-phosphofructokinase, were reduced in brown adipose tissue in db/db mice compared to their lean littermates. Treatment of db/db mice with the thermogenic beta-adrenoceptor agonist, BRL 26830, restored normoglycaemia. The only significant increase in ...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(84)80903-5

    authors: Young P,Cawthorne MA,Levy AL,Wilson K

    更新日期:1984-10-15 00:00:00

  • Generation of Gla-domainless FVIIa by cathepsin G-mediated cleavage.

    abstract::Coagulation factor VII contains ten gamma-carboxyglutamic acid residues in the N-terminal region (Gla-domain) which are essential for the hemostatic function of FVII. The present study shows that granulocyte cathepsin G degrades the Gla-domain of FVIIa in vitro. Characterization of the truncated FVIIa by SDS-PAGE and ...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(92)80989-t

    authors: Nicolaisen EM,Petersen LC,Thim L,Jacobsen JK,Christensen M,Hedner U

    更新日期:1992-07-20 00:00:00

  • Iron(II) induces changes in the conformation of mammalian mitochondrial DNA resulting in a reduction of its transcriptional rate.

    abstract::Living isolated mitochondria incubated with iron(II) show a major alteration in mitochondrial DNA (mtDNA) conformational forms as assessed by Southern blot analysis of undigested mtDNA. In the presence of iron(II), form I is transformed into form III in a dose-dependent manner. This alteration in mtDNA conformation sh...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(00)01768-3

    authors: Asín J,Pérez-Martos A,Fernández-Silva P,Montoya J,Andreu AL

    更新日期:2000-09-01 00:00:00

  • First tau repeat domain binding to growing and taxol-stabilized microtubules, and serine 262 residue phosphorylation.

    abstract::Tau phosphorylation plays a crucial role in microtubule stabilization and in Alzheimer's disease. To characterize the molecular mechanisms of tau binding on microtubules, we synthesized the peptide R1 (QTAPVPMPDLKNVKSKIGSTENLKHQPGGGKVQI), reproducing the first tau microtubule binding motif. We thermodynamically charac...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(02)02999-x

    authors: Devred F,Douillard S,Briand C,Peyrot V

    更新日期:2002-07-17 00:00:00

  • Different kinetic patterns in the alpha-chymotrypsin-catalysed hydrolysis of synthetic ester substrates.

    abstract::The reaction of alpha-chymotrypsin with AcTyr-OEt and with AcTrp-OEt at pH 7.0 and 7.8 was studied over a wide range of substrate concentrations. The reaction with AcTyr-OEt at pH 7.8 was shown to be non-hyperbolic using a variety of criteria whereas those at pH 7.0 with the same substrate and at both pH values with A...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(85)81312-0

    authors: Garrell J,Cuchillo CM

    更新日期:1985-10-14 00:00:00

  • Promiscuous activity of arginine:glycine amidinotransferase is responsible for the synthesis of the novel cardiovascular risk factor homoarginine.

    abstract::Low plasma homoarginine has emerged as a risk marker for cardiovascular disease. We exploited cells of a patient with a rare inborn error of metabolism to explore potential pathways of homoarginine synthesis, using stable isotopes and mass spectrometry. Control lymphoblasts, as opposed to lymphoblasts from an arginine...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/j.febslet.2012.08.020

    authors: Davids M,Ndika JD,Salomons GS,Blom HJ,Teerlink T

    更新日期:2012-10-19 00:00:00

  • ROPGEF1 and ROPGEF4 are functional regulators of ROP11 GTPase in ABA-mediated stomatal closure in Arabidopsis.

    abstract::ROPs constitute a family of plant-specific, RHO-like small GTPases that serve as molecular switches in a wide range of signaling pathways. The activities of ROPs are regulated by guanine nucleotide exchange factors (GEFs). ROP11, a member of the ROP GTPase family in Arabidopsis, is a negative regulator of multiple ABA...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/j.febslet.2012.03.040

    authors: Li Z,Liu D

    更新日期:2012-05-07 00:00:00

  • Reaction of nitric oxide with hydrogen peroxide to produce potentially cytotoxic singlet oxygen as a model for nitric oxide-mediated killing.

    abstract::Nitric oxide, as well as being a major regulator of vascular reactivity, has been shown to be one of the mediators of cytotoxicity in macrophages. This cytotoxic effect seems to be due to the interaction between nitric oxide and oxygen-related free radicals. This study shows that, in vitro, nitric oxide reacts with hy...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(93)80621-z

    authors: Noronha-Dutra AA,Epperlein MM,Woolf N

    更新日期:1993-04-19 00:00:00

  • Isolation and characterization of replication protein A (RP-A) from tobacco cells.

    abstract::Replication protein A (RP-A) was isolated from tobacco suspension cells and purified to near homogeneity by a procedure involving isolation of protoplasts, preparation of nuclei, nuclear lysis, binding to a column of single-stranded (ss) DNA cellulose and elution at different salt concentrations. The purified protein ...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(97)00897-1

    authors: Garcia-Maya MM,Buck KW

    更新日期:1997-08-11 00:00:00

  • Evidence that the gene YLR070c of Saccharomyces cerevisiae encodes a xylitol dehydrogenase.

    abstract::The open reading frame YLR070c of Saccharomyces cerevisiae has high sequence similarity to S. cerevisiae sorbitol dehydrogenase and to xylitol dehydrogenase of Pichia stipitis. Overexpression of this open reading frame in S. cerevisiae resulted in xylitol dehydrogenase activity. The enzyme is specific for NADH. The fo...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(99)01016-9

    authors: Richard P,Toivari MH,Penttilä M

    更新日期:1999-08-20 00:00:00

  • Transiently disordered tails accelerate folding of globular proteins.

    abstract::Numerous biological proteins exhibit intrinsic disorder at their termini, which are associated with multifarious functional roles. Here, we show the surprising result that an increased percentage of terminal short transiently disordered regions with enhanced flexibility (TstDREF) is associated with accelerated folding...

    journal_title:FEBS letters

    pub_type: 信件

    doi:10.1002/1873-3468.12725

    authors: Mallik S,Ray T,Kundu S

    更新日期:2017-07-01 00:00:00

  • Gelation of liposome interior. A novel method for drug encapsulation.

    abstract::Liposomes can be loaded with weak acids and bases, which exist in solutions in equilibrium with membrane permeable uncharged form, using various gradients across their membranes. Because in some cases the estimated drug concentration in the loaded liposomes exceeds their aqueous solubility we investigated the physical...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(92)80947-f

    authors: Lasic DD,Frederik PM,Stuart MC,Barenholz Y,McIntosh TJ

    更新日期:1992-11-09 00:00:00

  • Binding of progastrin fragments to the 78 kDa gastrin-binding protein.

    abstract::The non-selective gastrin/cholecystokinin receptor antagonists proglumide and benzotript inhibit colon carcinoma cell proliferation by binding to the 78 kDa gastrin-binding protein (GBP) (Baldwin, Proc. Natl. Acad. Sci. USA, 91 (1994) 7593-7597). However, although most colon carcinoma cell lines synthesize progastrin,...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(95)00017-4

    authors: Baldwin GS

    更新日期:1995-02-06 00:00:00

  • Loops linking secondary structure elements affect the stability of the molten globule intermediate state of apomyoglobin.

    abstract::Apomyoglobin is a widely used model for studying the molecular mechanisms of globular protein folding. This work aimed to analyze the effects of rigidity and length of loops linking protein secondary structure elements on the stability of the molten globule intermediate state. For this purpose, we studied folding/unfo...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1002/1873-3468.13905

    authors: Majorina MA,Balobanov VA,Uversky VN,Melnik BS

    更新日期:2020-10-01 00:00:00

  • Identification and characterization of Runx2 phosphorylation sites involved in matrix metalloproteinase-13 promoter activation.

    abstract::Matrix metalloproteinase-13 (MMP-13) plays a critical role in parathyroid hormone (PTH)-induced bone resorption. PTH acts via protein kinase A (PKA) to phosphorylate and stimulate the transactivation of Runx2 for MMP-13 promoter activation. We show here that PTH stimulated Runx2 phosphorylation in rat osteoblastic cel...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/j.febslet.2009.02.040

    authors: Selvamurugan N,Shimizu E,Lee M,Liu T,Li H,Partridge NC

    更新日期:2009-04-02 00:00:00

  • Structural modelling of the complex of leucyl-tRNA synthetase and mis-aminoacylated tRNALeu.

    abstract::To assure fidelity of translation, class Ia aminoacyl-tRNA synthetases (aaRSs) edit mis-aminoacylated tRNAs. Mis-attached amino acids and structural water molecules are not included simultaneously in the current crystal structures of the aaRSctRNA complexes, where the 3'-ends (adenine 76; A76) are bound to the editing...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/j.febslet.2009.01.049

    authors: Hagiwara Y,Nureki O,Tateno M

    更新日期:2009-02-18 00:00:00

  • Leptospiral TlyC is an extracellular matrix-binding protein and does not present hemolysin activity.

    abstract::The role of TlyA, TlyB and TlyC proteins in the biology of Leptospira is still uncertain. Although these proteins have been considered as putative hemolysins, we demonstrate that leptospiral recombinant TlyB and TlyC do not possess hemolytic activity. However, further experiments showed that TlyC is a surface-exposed ...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/j.febslet.2009.03.050

    authors: Carvalho E,Barbosa AS,Gómez RM,Cianciarullo AM,Hauk P,Abreu PA,Fiorini LC,Oliveira ML,Romero EC,Gonçales AP,Morais ZM,Vasconcellos SA,Ho PL

    更新日期:2009-04-17 00:00:00

  • Pyrimidine tract binding protein and La autoantigen interact differently with the 5' untranslated regions of lentiviruses and oncoretrovirus mRNAs.

    abstract::Retrovirus genomic mRNA exhibits a several hundred nucleotides-long untranslated region (5' UTR) which encloses many control elements required for retrovirus replication. In addition, this 5' UTR contains translation regulatory elements, such as internal ribosome entry sites (IRESes) that have been described in oncore...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(01)02137-8

    authors: Waysbort A,Bonnal S,Audigier S,Estève JP,Prats AC

    更新日期:2001-02-09 00:00:00

  • On the presence of HMG proteins in yeast.

    abstract::Two polypeptides antigenically related to mammalian HMG1/2 have been detected in the yeast Saccharomyces cerevisiae. One exhibits an electrophoretic mobility in the range of mammalian HMG1/2 whereas the second polypeptide comigrates with yeast HMG S4. Evidence for the presence of HMG14/17 in yeast has not been obtaine...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(86)80322-2

    authors: Estruch F,Pérez-Ortín JE,José M,Puigdomènech P,Franco L

    更新日期:1986-03-03 00:00:00

  • Evidence for two interaction regions for phosphatidylinositol(4,5)-bisphosphate on mammalian profilin I.

    abstract::The binding of phosphatidylinositol(4,5)-bisphosphate (PI(4,5)P(2)) to profilin at a region distinct from the actin interaction surface is demonstrated by experiments with covalently cross-linked profilin:beta-actin. The result is in agreement with observations made with several mutant profilins and provides strong ev...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(02)02913-7

    authors: Skare P,Karlsson R

    更新日期:2002-07-03 00:00:00

  • Acid induced equilibrium unfolding of annexin V wild type shows two intermediate states.

    abstract::Annexin V is an alpha-helical protein which shows anticoagulatory and antiinflammatory activity. It is supposed to be involved in membrane fusion and exocytosis. In this study acid-induced equilibrium unfolding of the human annexin V is investigated by fluorescence and circular dichroism spectroscopy. The spectroscopi...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(98)00105-7

    authors: Beermann ofm cap BB,Hinz HJ,Hofmann A,Huber R

    更新日期:1998-02-20 00:00:00

  • Cell attachment and fibrinogen binding properties of platelet and endothelial cell thrombospondin are not affected by structural differences in the 70 and 18 kDa protease-resistant domains.

    abstract::Structural differences between platelet and endothelial cell thrombospondin (TBSP) were found in two protease-resistant domains (70 and 18 kDa). The 70 kDa fragment is involved in the binding of TBSP to fibrinogen and the 18 kDa fragment in the attachment to various cultured cells. Despite these structural differences...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(88)80001-2

    authors: Clezardin P,Bourdillon MC,Hunter NR,McGregor JL

    更新日期:1988-02-15 00:00:00

  • Linkage between phosphorylated cystatin alpha and filaggrin by epidermal transglutaminase as a model of cornified envelope and inhibition of cathepsin L activity by cornified envelope and the conjugated cystatin alpha.

    abstract::Lysine-rich phosphorylated cystatin alpha (P-cystatin alpha) from newborn rat epidermis is a good substrate for epidermal transglutaminase (TGase) and also one of the component proteins of cornified envelope in the stratum corneum. Since the filaggrin linker segment peptide was efficiently conjugated with P-cystatin a...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(94)80131-2

    authors: Takahashi M,Tezuka T,Kakegawa H,Katunuma N

    更新日期:1994-03-07 00:00:00

  • Changes in expression of C2cd4c in pancreatic endocrine cells during pancreatic development.

    abstract::C2cd4c, encoded by a gene belonging to the C2cd4 family, contains a C2 domain conserved across species and is localized to the cytoplasm. To examine the role of C2cd4c in the pancreas, we studied its localization and generated C2cd4c knockout (KO) mice. C2cd4c was expressed in pancreatic endocrine progenitors at early...

    journal_title:FEBS letters

    pub_type: 信件

    doi:10.1002/1873-3468.12271

    authors: Omori H,Ogaki S,Sakano D,Sato M,Umeda K,Takeda N,Nakagata N,Kume S

    更新日期:2016-08-01 00:00:00

  • The molecular peculiarities of catalase-peroxidases.

    abstract::In developing ideas of how protein structure modifies haem reactivity, the activity of Class I of the plant peroxidase superfamily (including cytochrome c peroxidase, ascorbate peroxidase and catalase-peroxidases (KatGs)) is an exciting field of research. Despite striking sequence homologies, there are dramatic differ...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(01)02237-2

    authors: Zámocký M,Regelsberger G,Jakopitsch C,Obinger C

    更新日期:2001-03-16 00:00:00

  • Evidence for a monooxygenase-catalyzed primary process in the catabolism of chlorophyll.

    abstract::Only recently have products of the enzymatic breakdown of the chlorophylls been characterized for the first time. All catabolites isolated until now from a chlorophyte and from angiosperms have in common the position at which the primary oxygenative ring cleavage occurs, yielding linear tetrapyrroles (19-formyl-1[21H,...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(95)00348-d

    authors: Curty C,Engel N,Gossauer A

    更新日期:1995-05-01 00:00:00

  • Identification of a cysteine involved in the interaction between carbon monoxide dehydrogenase and corrinoid/Fe-S protein from Clostridium thermoaceticum.

    abstract::In Clostridium thermoaceticum, the synthesis of acetyl-CoA from methyl tetrahydrofolate occurs via a series of enzymatic reactions involving methyl transferase, corrinoid/Fe-S protein (corrinoid), carbon monoxide dehydrogenase (CODH) and ferredoxin. We have investigated the possibility of one or more of these proteins...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(93)81808-d

    authors: Shanmugasundaram T,Sundaresh CS,Kumar GK

    更新日期:1993-07-12 00:00:00