Production of adeno-associated virus vectors for in vitro and in vivo applications.

Abstract:

:Delivering and expressing a gene of interest in cells or living animals has become a pivotal technique in biomedical research and gene therapy. Among viral delivery systems, adeno-associated viruses (AAVs) are relatively safe and demonstrate high gene transfer efficiency, low immunogenicity, stable long-term expression, and selective tissue tropism. Combined with modern gene technologies, such as cell-specific promoters, the Cre/lox system, and genome editing, AAVs represent a practical, rapid, and economical alternative to conditional knockout and transgenic mouse models. However, major obstacles remain for widespread AAV utilization, such as impractical purification strategies and low viral quantities. Here, we report an improved protocol to produce serotype-independent purified AAVs economically. Using a helper-free AAV system, we purified AAVs from HEK293T cell lysates and medium by polyethylene glycol precipitation with subsequent aqueous two-phase partitioning. Furthermore, we then implemented an iodixanol gradient purification, which resulted in preparations with purities adequate for in vivo use. Of note, we achieved titers of 1010-1011 viral genome copies per µl with a typical production volume of up to 1 ml while requiring five times less than the usual number of HEK293T cells used in standard protocols. For proof of concept, we verified in vivo transduction via Western blot, qPCR, luminescence, and immunohistochemistry. AAVs coding for glutaredoxin-1 (Glrx) shRNA successfully inhibited Glrx expression by ~66% in the liver and skeletal muscle. Our study provides an improved protocol for a more economical and efficient purified AAV preparation.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Kimura T,Ferran B,Tsukahara Y,Shang Q,Desai S,Fedoce A,Pimentel DR,Luptak I,Adachi T,Ido Y,Matsui R,Bachschmid MM

doi

10.1038/s41598-019-49624-w

subject

Has Abstract

pub_date

2019-09-19 00:00:00

pages

13601

issue

1

issn

2045-2322

pii

10.1038/s41598-019-49624-w

journal_volume

9

pub_type

杂志文章
  • Integrated stress response inhibition provides sex-dependent protection against noise-induced cochlear synaptopathy.

    abstract::Noise-induced hearing loss (NIHL) is a common health concern with significant social, psychological, and cognitive implications. Moderate levels of acoustic overstimulation associated with tinnitus and impaired speech perception cause cochlear synaptopathy, characterized physiologically by reduction in wave I of the s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-75058-w

    authors: Rouse SL,Matthews IR,Li J,Sherr EH,Chan DK

    更新日期:2020-10-22 00:00:00

  • Generation of orbital angular momentum modes via holographic leaky-wave metasurfaces.

    abstract::Recently, electromagnetic (EM) waves carrying orbital angular momentum (OAM) has received considerable attention in increasingly many different realms, such as communication systems, super-resolution imaging, optical communications and quantum state manipulation. In this paper, two different kinds of two dimensional (...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-64278-9

    authors: Oraizi H,Emamian H

    更新日期:2020-04-30 00:00:00

  • Protease induced plasticity: matrix metalloproteinase-1 promotes neurostructural changes through activation of protease activated receptor 1.

    abstract::Matrix metalloproteinases (MMPs) are a family of secreted endopeptidases expressed by neurons and glia. Regulated MMP activity contributes to physiological synaptic plasticity, while dysregulated activity can stimulate injury. Disentangling the role individual MMPs play in synaptic plasticity is difficult due to overl...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep35497

    authors: Allen M,Ghosh S,Ahern GP,Villapol S,Maguire-Zeiss KA,Conant K

    更新日期:2016-10-20 00:00:00

  • COVID-Net: a tailored deep convolutional neural network design for detection of COVID-19 cases from chest X-ray images.

    abstract::The Coronavirus Disease 2019 (COVID-19) pandemic continues to have a devastating effect on the health and well-being of the global population. A critical step in the fight against COVID-19 is effective screening of infected patients, with one of the key screening approaches being radiology examination using chest radi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-76550-z

    authors: Wang L,Lin ZQ,Wong A

    更新日期:2020-11-11 00:00:00

  • Lateral Antimicrobial Resistance Genetic Transfer is active in the open environment.

    abstract::Historically, the environment has been viewed as a passive deposit of antimicrobial resistance mechanisms, where bacteria show biological cost for maintenance of these genes. Thus, in the absence of antimicrobial pressure, it is expected that they disappear from environmental bacterial communities. To test this scenar...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-00600-2

    authors: Chamosa LS,Álvarez VE,Nardelli M,Quiroga MP,Cassini MH,Centrón D

    更新日期:2017-03-31 00:00:00

  • Intrinsic functional connectivity of blue and red brains: neurobiological evidence of different stress resilience between political attitudes.

    abstract::Conservatives are more sensitive to threatening/anxious situations in perceptual and cognitive levels, experiencing emotional responses and stress, while liberals are more responsive to but tolerant of ambiguous and uncertain information. Interestingly, conservatives have greater psychological well-being and are more ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-72980-x

    authors: Kim T,Hur JW,Kwak S,Jang D,Lee SH,Kwon JS

    更新日期:2020-09-28 00:00:00

  • Genetic risks to nicotine dependence predict negative mood and affect in current non-smokers.

    abstract::Nicotine is the psychoactive agent involved in nicotine dependence. However, nicotine as a drug, and its effects on human psychology are largely under-investigated in genetic studies. In this study, we recruited 208 current non-smokers to evaluate the effect of nicotine and its relationship to genetic risks to nicotin...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep09521

    authors: Chen X,Aggen SH,Chen J,Li L,Kendler KS,Blank M,Eissenberg T

    更新日期:2015-03-31 00:00:00

  • A self-sustaining atomic magnetometer with τ(-1) averaging property.

    abstract::Quantum measurement using coherent superposition of intrinsic atomic states has the advantage of being absolute measurement and can form metrological standards. One example is the absolute measurement of magnetic field by monitoring the Larmor precession of atomic spins whilst another being the Ramsey type atomic cloc...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep28169

    authors: Xu C,Wang SG,Feng YY,Zhao L,Wang LJ

    更新日期:2016-06-30 00:00:00

  • Disruption of the mouse Shmt2 gene confers embryonic anaemia via foetal liver-specific metabolomic disorders.

    abstract::In a previous study, we proposed that age-related mitochondrial respiration defects observed in elderly subjects are partially due to age-associated downregulation of nuclear-encoded genes, including serine hydroxymethyltransferase 2 (SHMT2), which is involved in mitochondrial one-carbon (1C) metabolism. This assertio...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-52372-6

    authors: Tani H,Mito T,Velagapudi V,Ishikawa K,Umehara M,Nakada K,Suomalainen A,Hayashi JI

    更新日期:2019-11-05 00:00:00

  • Pathway-based dissection of the genomic heterogeneity of cancer hallmarks' acquisition with SLAPenrich.

    abstract::Cancer hallmarks are evolutionary traits required by a tumour to develop. While extensively characterised, the way these traits are achieved through the accumulation of somatic mutations in key biological pathways is not fully understood. To shed light on this subject, we characterised the landscape of pathway alterat...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-25076-6

    authors: Iorio F,Garcia-Alonso L,Brammeld JS,Martincorena I,Wille DR,McDermott U,Saez-Rodriguez J

    更新日期:2018-04-30 00:00:00

  • Previous antiretroviral drug use compromises standard first-line HIV therapy and is mediated through drug-resistance.

    abstract::In ART programs in sub-Saharan Africa, a growing proportion of HIV-infected persons initiating first-line antiretroviral therapy (ART) have a history of prior antiretroviral drug use (PAU). We assessed the effect of PAU on the risk of pre-treatment drug resistance (PDR) and virological failure (VF) in a multicountry c...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-33538-0

    authors: Inzaule SC,Kityo CM,Siwale M,Akanmu AS,Wellington M,de Jager M,Ive P,Mandaliya K,Stevens W,Boender TS,Ondoa P,Sigaloff KCE,Naniche D,Rinke de Wit TF,Hamers RL

    更新日期:2018-10-25 00:00:00

  • The effect of adipose-derived stem cell sheets and CTGF on early flexor tendon healing in a canine model.

    abstract::Intrasynovial tendon injuries are among the most challenging in orthopedics. Despite significant improvements in operative and rehabilitation methods, functional outcomes continue to be limited by adhesions, gap formation, and rupture. Adhesions result from excessive inflammation, whereas tendon gapping and rupture re...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-29474-8

    authors: Shen H,Jayaram R,Yoneda S,Linderman SW,Sakiyama-Elbert SE,Xia Y,Gelberman RH,Thomopoulos S

    更新日期:2018-07-23 00:00:00

  • Magnetic-charge ordering and phase transitions in monopole-conserved square spin ice.

    abstract::Magnetic-charge ordering and corresponding magnetic/monopole phase transitions in spin ices are the emergent topics of condensed matter physics. In this work, we investigate a series of magnetic-charge (monopole) phase transitions in artificial square spin ice model using the conserved monopole density algorithm. It i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep15875

    authors: Xie YL,Du ZZ,Yan ZB,Liu JM

    更新日期:2015-10-29 00:00:00

  • Effect of the phenoxy groups on PDIB and its derivatives.

    abstract::The anisotropic hole and electron mobilities in N,N'-3,4,9,10-perylenediimide-1,7-phenoxy (PDIB-2OPh) and N,N'-3,4,9,10-perylenediimide (PDIB) were theoretically predicted using the Marcus-Hush theory. The substituent effect of phenoxy on their mobility rates, absorption spectra, electron affinities, and ionization po...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep35555

    authors: Song P,Guan B,Zhou Q,Zhao M,Huang J,Ma F

    更新日期:2016-10-19 00:00:00

  • Preparation and characterization of Fe3O4 particles with novel nanosheets morphology and magnetochromatic property by a modified solvothermal method.

    abstract::Novel-morphological Fe3O4 nanosheets with magnetochromatic property have been prepared by a modified solvothermal method. Such nanosheets could form one-dimension photonic crystal under an external magnetic field. The Fe3O4 nanosheets suspension could strongly diffract visible light and display varied colors with chan...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep09320

    authors: Zhuang L,Zhang W,Zhao Y,Shen H,Lin H,Liang J

    更新日期:2015-03-23 00:00:00

  • The first amber caridean shrimp from Mexico reveals the ancient adaptation of the Palaemon to the mangrove estuary environment.

    abstract::The aquatic and semiaquatic invertebrates in fossiliferous amber have been reported, including taxa in a wide range of the subphylum Crustacea of Arthropoda. However, no caridean shrimp has been discovered so far in the world. The shrimp Palaemon aestuarius sp. nov. (Palaemonidae) preserved in amber from Chiapas, Mexi...

    journal_title:Scientific reports

    pub_type: 历史文章,杂志文章

    doi:10.1038/s41598-019-51218-5

    authors: Du BJ,Chen R,Li XZ,Tao WT,Bu WJ,Xiao JH,Huang DW

    更新日期:2019-10-29 00:00:00

  • 24-hour-restraint stress induces long-term depressive-like phenotypes in mice.

    abstract::There is an increasing risk of mental disorders, such as acute stress disorder (ASD), post-traumatic stress disorder (PTSD) and depression among survivors who were trapped in rubble during earthquake. Such long-term impaction of a single acute restraint stress has not been extensively explored. In this study, we subje...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep32935

    authors: Chu X,Zhou Y,Hu Z,Lou J,Song W,Li J,Liang X,Chen C,Wang S,Yang B,Chen L,Zhang X,Song J,Dong Y,Chen S,He L,Xie Q,Chen X,Li W

    更新日期:2016-09-09 00:00:00

  • Identification of DKK-1 as a novel mediator of statin effects in human endothelial cells.

    abstract::This study shows that DKK-1, a member of the Dickkopf family and a regulator of the Wnt pathways, represents a novel target of statins which, through the inhibition of HMG-CoA reductase and of non-steroidal isoprenoid intermediates, exert extra-beneficial effect in preventing atherosclerosis beyond their effect on the...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-35119-7

    authors: Pontremoli M,Brioschi M,Baetta R,Ghilardi S,Banfi C

    更新日期:2018-11-12 00:00:00

  • Archetypal transcriptional blocks underpin yeast gene regulation in response to changes in growth conditions.

    abstract::The transcriptional responses of yeast cells to diverse stresses typically include gene activation and repression. Specific stress defense, citric acid cycle and oxidative phosphorylation genes are activated, whereas protein synthesis genes are coordinately repressed. This view was achieved from comparative transcript...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-26170-5

    authors: Talavera D,Kershaw CJ,Costello JL,Castelli LM,Rowe W,Sims PFG,Ashe MP,Grant CM,Pavitt GD,Hubbard SJ

    更新日期:2018-05-21 00:00:00

  • Efficacy and safety of muscarinic antagonists as add-on therapy for male lower urinary tract symptoms.

    abstract::Alpha-adrenoceptor antagonists (alpha-blockers) are widely prescribed to treat lower urinary tract symptoms (LUTS) in men but fail to ameliorate LUTS sufficiently, especially the storage symptoms related to frequency, urgency and nocturia. We performed a meta-analysis of randomised controlled trials (RCTs) comparing a...

    journal_title:Scientific reports

    pub_type: 杂志文章,meta分析,评审

    doi:10.1038/srep03948

    authors: Li J,Shi Q,Bai Y,Pu C,Tang Y,Yuan H,Wu Y,Wei Q,Han P

    更新日期:2014-02-04 00:00:00

  • Evolutionary analysis of mumps viruses of genotype F collected in mainland China in 2001-2015.

    abstract::Mumps incidence in mainland China remains at a high level. Genotype F has been the predominant genotype of mumps virus (MuV) in the last 20 years in mainland China. To better understand the genetic characteristics of MuV in China, the sequences of the Small Hydrophobic (SH), Hemagglutinin-Neuraminidase (HN) and Fusion...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-17474-z

    authors: Cui A,Rivailler P,Zhu Z,Deng X,Hu Y,Wang Y,Li F,Sun Z,He J,Si Y,Tian X,Zhou S,Lei Y,Zheng H,Rota PA,Xu W

    更新日期:2017-12-07 00:00:00

  • Thermal perturbation of NMR properties in small polar and non-polar molecules.

    abstract::Water is an important constituent in an abundant number of chemical systems; however, its presence complicates the analysis of in situ 1H MAS NMR investigations due to water's ease of solidification and vaporization, the large changes in mobility, affinity for hydrogen bonding interactions, etc., that are reflected by...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-63174-6

    authors: Jaegers NR,Wang Y,Hu JZ

    更新日期:2020-04-08 00:00:00

  • Small RNA profiles from Panax notoginseng roots differing in sizes reveal correlation between miR156 abundances and root biomass levels.

    abstract::Plant genomes encode several classes of small regulatory RNAs (sRNAs) that play critical roles in both development and stress responses. Panax notoginseng (Burk.) F.H. Chen (P. notoginseng) is an important traditional Chinese herbal medicinal plant species for its haemostatic effects. Therefore, the root yield of P. n...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-09670-8

    authors: Zheng Y,Chen K,Xu Z,Liao P,Zhang X,Liu L,Wei K,Liu D,Li YF,Sunkar R,Cui X

    更新日期:2017-08-25 00:00:00

  • Functional MRI in Awake Dogs Predicts Suitability for Assistance Work.

    abstract::The overall goal of this work was to measure the efficacy of fMRI for predicting whether a dog would be a successful service dog. The training and imaging were performed in 49 dogs entering service training at 17-21 months of age. 33 dogs completed service training and were matched with a person, while 10 were release...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep43704

    authors: Berns GS,Brooks AM,Spivak M,Levy K

    更新日期:2017-03-07 00:00:00

  • Mycobacterium tuberculosis infection is associated with increased B cell responses to unrelated pathogens.

    abstract::Antigens from Mycobacterium tuberculosis (M.tb), have been shown to stimulate human B cell responses to unrelated recall antigens in vitro. However, it is not known whether natural M.tb infection or whether vaccination with, Mycobacterium bovis BCG, has a similar effect. This study investigated the effects of M.tb inf...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-71044-4

    authors: Kimuda SG,Andia-Biraro I,Sebina I,Egesa M,Nalwoga A,Smith SG,Bagaya BS,Levin J,Elliott AM,Raynes JG,Cose S

    更新日期:2020-08-31 00:00:00

  • Development and performance of a targeted whole exome sequencing enrichment kit for the dog (Canis Familiaris Build 3.1).

    abstract::Whole exome sequencing is a technique that aims to selectively sequence all exons of protein-coding genes. A canine whole exome sequencing enrichment kit was designed based on the latest canine reference genome (build 3.1.72). Its performance was tested by sequencing 2 exome captures, each consisting of 4 pre-capture ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep05597

    authors: Broeckx BJ,Coopman F,Verhoeven GE,Bavegems V,De Keulenaer S,De Meester E,Van Niewerburgh F,Deforce D

    更新日期:2014-07-07 00:00:00

  • Design, biological evaluation and 3D QSAR studies of novel dioxin-containing pyrazoline derivatives with thiourea skeleton as selective HER-2 inhibitors.

    abstract::A series of novel dioxin-containing pyrazoline derivatives with thiourea skeleton have been designed, synthesized and evaluated for their EGFR/HER-2 inhibitory and anti-proliferation activities. A majority of them displayed selective HER-2 inhibitory activity against EGFR inhibitory activity. Compound C20 displayed th...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep27571

    authors: Yang B,Yang YS,Yang N,Li G,Zhu HL

    更新日期:2016-06-08 00:00:00

  • Identification of the novel 3' UTR sequences of human IL-21 mRNA as potential targets of miRNAs.

    abstract::Hepatitis B virus (HBV) infection is a leading cause of hepatocellular carcinoma worldwide. However, the strategy of HBV to escape from the host immune system remains largely unknown. In this study, we examined extracellular vesicles (EVs) secreted from human hepatocytes infected with HBV. EVs includeing exosomes are ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-07853-x

    authors: Enomoto Y,Takagi R,Naito Y,Kiniwa T,Tanaka Y,Hamada-Tsutsumi S,Kawano M,Matsushita S,Ochiya T,Miyajima A

    更新日期:2017-08-10 00:00:00

  • Author Correction: Supersaturation-controlled microcrystallization and visualization analysis for serial femtosecond crystallography.

    abstract::A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has been fixed in the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-018-24178-5

    authors: Lee DB,Kim JM,Seok JH,Lee JH,Jo JD,Mun JY,Conrad C,Coe J,Nelson G,Hogue B,White TA,Zatsepin N,Weierstall U,Barty A,Chapman H,Fromme P,Spence J,Chung MS,Oh CH,Kim KH

    更新日期:2018-04-17 00:00:00

  • Ranking the invasions of cheaters in structured populations.

    abstract::The identification of the most influential individuals in structured populations is an important research question, with many applications across the social and natural sciences. Here, we study this problem in evolutionary populations on static networks, where invading cheaters can lead to the collapse of cooperation....

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-59020-4

    authors: Yang G,Cavaliere M,Zhu C,Perc M

    更新日期:2020-02-10 00:00:00