Abstract:
:Pigeon circovirus (PiCV) is taxonomically classified as a member of the Circovirus genus, family Circoviridae. The virus contains a single stranded DNA genome of approximately 2 kb, with minor length variations among different isolates. The occurrence of PiCV infections in pigeons (Columba livia) has been documented worldwide over the past 20 years; however, in Brazil there were still no reports on PiCV detection. This study identifies seven PiCV genomes recovered from domestic pigeons of South Brazil through high-throughput sequencing and shows a high frequency of PiCV infection, through quantitative real-time PCR. Phylogenetic classification was performed by maximum likelihood analysis of the full genomes, ORF V1 (Rep) and ORF C1 (Cap). The results show that either full genome or Cap based analysis allowed PiCV classification into five major clades (groups A to E), where Brazilian sequences were classified as A, C or D. Recombination analyses were carried out with Simplot and RDP4 and the results show that both Rep and Cap ORFs contain several recombination hotspots, pointing to an important role for such events in PiCV evolution.
journal_name
Arch Viroljournal_title
Archives of virologyauthors
Loiko MR,Junqueira DM,Varela APM,Tochetto C,Scheffer CM,Lima DA,Morel AP,Cerva C,Paim WP,Mayer FQ,Roehe PMdoi
10.1007/s00705-018-3990-8subject
Has Abstractpub_date
2018-11-01 00:00:00pages
3083-3090issue
11eissn
0304-8608issn
1432-8798pii
10.1007/s00705-018-3990-8journal_volume
163pub_type
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